Wall clock time and date at job start Tue Mar 31 2020 19:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35271 * 126.71153 * 2 1 4 4 C 1.41929 * 103.96023 * 180.02562 * 3 2 1 5 5 O 1.35711 * 126.87596 * 179.97438 * 4 3 2 6 6 C 1.42897 * 116.99498 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46818 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00011 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99893 * 179.97438 * 7 6 5 10 10 C 1.45728 * 117.75934 * 359.73512 * 9 7 6 11 11 C 1.53371 * 109.37876 * 141.02184 * 10 9 7 12 12 C 1.52938 * 108.38773 * 54.08758 * 11 10 9 13 13 C 1.52922 * 109.79281 * 293.86784 * 12 11 10 14 14 H 1.09002 * 111.27095 * 293.35185 * 13 12 11 15 15 C 1.44185 * 117.75796 * 179.97438 * 9 7 6 16 16 H 1.09000 * 109.22596 * 332.58776 * 15 9 7 17 17 C 1.54068 * 111.76654 * 93.48063 * 15 9 7 18 18 C 1.54045 * 103.74845 * 153.24709 * 17 15 9 19 19 N 1.46884 * 107.70849 * 342.87607 * 18 17 15 20 20 C 1.36944 * 125.57970 * 177.01413 * 19 18 17 21 21 H 1.07997 * 119.99710 * 175.73244 * 20 19 18 22 22 C 1.38810 * 120.00241 * 355.73539 * 20 19 18 23 23 N 1.31629 * 119.99628 * 7.45227 * 22 20 19 24 24 Si 1.86797 * 120.00163 * 187.45620 * 22 20 19 25 25 H 1.48492 * 109.47333 * 94.98580 * 24 22 20 26 26 H 1.48497 * 109.46966 * 214.98752 * 24 22 20 27 27 H 1.48497 * 109.46904 * 334.98273 * 24 22 20 28 28 N 1.30613 * 106.24016 * 0.24320 * 4 3 2 29 29 O 1.20916 * 111.50024 * 359.57192 * 28 4 3 30 30 H 1.09000 * 109.47725 * 89.99038 * 1 2 3 31 31 H 1.09000 * 109.47310 * 210.00047 * 1 2 3 32 32 H 1.09002 * 109.46628 * 329.99395 * 1 2 3 33 33 H 1.08004 * 128.01736 * 0.05140 * 3 2 1 34 34 H 1.09003 * 109.47416 * 299.99448 * 6 5 4 35 35 H 1.09002 * 109.47744 * 59.99967 * 6 5 4 36 36 H 1.09009 * 109.45715 * 261.16286 * 10 9 7 37 37 H 1.09002 * 109.45964 * 21.10709 * 10 9 7 38 38 H 1.09004 * 109.79616 * 294.34889 * 11 10 9 39 39 H 1.08999 * 109.74190 * 173.78980 * 11 10 9 40 40 H 1.09003 * 109.41697 * 173.77392 * 12 11 10 41 41 H 1.08994 * 109.41597 * 53.96978 * 12 11 10 42 42 H 1.08999 * 110.57259 * 271.81802 * 17 15 9 43 43 H 1.09002 * 110.56782 * 34.53442 * 17 15 9 44 44 H 1.09003 * 109.80979 * 102.43117 * 18 17 15 45 45 H 1.09002 * 109.81023 * 223.25781 * 18 17 15 46 46 H 0.97002 * 119.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0006 5 8 4.7953 1.2217 -0.0013 6 6 5.9988 0.4511 -0.0024 7 6 7.1879 1.3769 -0.0025 8 8 7.0213 2.5782 -0.0021 9 7 8.4367 0.8698 -0.0029 10 6 8.5804 -0.5804 0.0026 11 6 9.7480 -0.9796 -0.9082 12 6 10.9919 -0.2086 -0.4639 13 6 10.7931 1.2861 -0.7187 14 1 10.7394 1.5017 -1.7858 15 6 9.5390 1.7993 -0.0035 16 1 9.2242 2.7290 -0.4774 17 6 10.0323 2.1014 1.4244 18 6 11.5120 2.4821 1.2277 19 7 11.9223 2.0085 -0.1008 20 6 13.1511 2.2053 -0.6724 21 1 13.3799 1.7578 -1.6282 22 6 14.1025 2.9801 -0.0232 23 7 13.8810 3.4035 1.2033 24 14 15.6971 3.4218 -0.8902 25 1 15.5607 4.7559 -1.5278 26 1 16.8047 3.4565 0.0983 27 1 15.9934 2.4040 -1.9301 28 7 3.4764 -0.7622 -0.0062 29 8 2.3084 -1.0749 -0.0006 30 1 -0.3634 0.0002 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 2.0312 2.1263 0.0008 34 1 6.0284 -0.1777 0.8874 35 1 6.0271 -0.1774 -0.8926 36 1 8.7754 -0.9221 1.0193 37 1 7.6614 -1.0378 -0.3638 38 1 9.5118 -0.7292 -1.9424 39 1 9.9315 -2.0507 -0.8236 40 1 11.8565 -0.5602 -1.0269 41 1 11.1610 -0.3756 0.5998 42 1 9.4762 2.9349 1.8535 43 1 9.9427 1.2173 2.0556 44 1 11.6257 3.5646 1.2854 45 1 12.1213 2.0053 1.9955 46 1 14.5457 3.9452 1.6568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049536877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:47 Heat of formation + Delta-G solvation = 9.569679 kcal Electronic energy + Delta-G solvation = -29251.309593 eV Core-core repulsion = 25145.270831 eV Total energy + Delta-G solvation = -4106.038762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.93103 -42.01251 -40.27139 -39.09410 -37.00121 -34.77938 -34.32742 -34.00377 -33.54021 -31.36556 -30.28139 -29.37634 -28.53140 -26.38138 -25.86342 -24.46940 -23.44528 -22.78578 -22.09626 -21.35502 -19.62226 -19.15411 -18.92297 -18.81605 -18.12409 -17.84953 -17.42865 -17.06815 -16.82103 -16.05413 -15.82449 -15.77695 -15.15339 -15.06833 -14.86963 -14.68482 -14.38478 -14.23714 -14.01351 -13.90690 -13.84378 -13.64384 -13.22496 -13.13515 -12.90737 -12.83554 -12.71654 -12.41710 -12.34025 -12.11648 -12.05063 -11.96809 -11.71483 -11.61743 -11.24476 -10.96476 -10.70515 -10.50151 -10.26190 -9.78483 -8.94174 -7.88111 -5.23325 0.45520 1.13130 1.19616 1.29630 1.44198 1.46836 1.55112 2.05726 2.30519 2.47907 3.08391 3.18468 3.30558 3.52314 3.74803 3.79474 3.82884 3.89170 3.90830 3.94063 3.99510 4.06917 4.08692 4.28675 4.40002 4.51963 4.53446 4.59443 4.71851 4.78302 4.79851 4.81323 4.91206 4.92752 5.01612 5.14876 5.28969 5.30085 5.38400 5.50807 5.53927 5.59298 5.69635 5.82477 6.15431 6.17122 6.90491 7.05881 7.22235 7.72658 8.37144 9.22630 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.002235 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.705136 B =12522.304910 C =12946.170973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.190 3.810 5 O -0.283 6.283 6 C 0.057 3.943 7 C 0.506 3.494 8 O -0.567 6.567 9 N -0.577 5.577 10 C 0.096 3.904 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.157 3.843 14 H 0.051 0.949 15 C 0.153 3.847 16 H 0.064 0.936 17 C -0.135 4.135 18 C 0.192 3.808 19 N -0.615 5.615 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.978 3.022 25 H -0.291 1.291 26 H -0.295 1.295 27 H -0.264 1.264 28 N -0.427 5.427 29 O 0.093 5.907 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.193 0.807 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.658 -13.700 -2.721 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.275 4.275 4 C -0.007 4.007 5 O -0.189 6.189 6 C -0.021 4.021 7 C 0.294 3.706 8 O -0.445 6.445 9 N -0.309 5.309 10 C -0.025 4.025 11 C -0.158 4.158 12 C -0.161 4.161 13 C 0.050 3.950 14 H 0.069 0.931 15 C 0.047 3.953 16 H 0.082 0.918 17 C -0.174 4.174 18 C 0.066 3.934 19 N -0.340 5.340 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.806 3.194 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.189 1.189 28 N -0.155 5.155 29 O 0.033 5.967 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.210 0.790 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -26.590 -13.704 -2.688 30.034 hybrid contribution 1.501 1.617 -0.010 2.206 sum -25.089 -12.087 -2.698 27.979 Atomic orbital electron populations 1.20679 0.79916 1.06575 1.05982 1.25110 0.98019 0.84069 0.98008 1.22170 0.87474 1.03147 1.14701 1.22429 0.88569 0.88691 1.01032 1.86242 1.10993 1.32170 1.89497 1.22597 0.80470 0.92468 1.06576 1.20606 0.84800 0.88738 0.76453 1.90733 1.85973 1.17505 1.50336 1.46996 1.03867 1.08113 1.71963 1.22065 1.01457 0.76974 1.01980 1.21857 0.92985 1.01555 0.99434 1.21913 0.98364 0.94854 1.00972 1.21111 0.85792 0.92758 0.95369 0.93119 1.20657 0.86384 0.91904 0.96309 0.91804 1.22789 0.96602 1.01242 0.96804 1.20716 0.89558 0.96299 0.86829 1.44738 1.09743 1.64093 1.15451 1.19394 0.89194 1.25354 1.02501 0.89640 1.25687 1.02304 1.00697 0.97284 1.70208 1.36063 1.41235 1.12397 0.85062 0.78694 0.78139 0.77473 1.21810 1.22195 1.18862 1.74127 0.99022 1.14026 1.28365 1.84741 1.10090 1.32834 1.69010 0.87281 0.87991 0.86979 0.78993 0.86404 0.86157 0.89824 0.86645 0.90928 0.87328 0.92732 0.93075 0.92129 0.90452 0.97077 0.97036 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.13 10.45 71.24 0.74 0.61 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -4.31 11.10 22.50 0.25 -4.06 16 4 C 0.19 4.48 8.01 85.79 0.69 5.17 16 5 O -0.28 -7.96 9.74 -71.28 -0.69 -8.66 16 6 C 0.06 1.31 4.47 71.24 0.32 1.63 16 7 C 0.51 15.80 7.66 87.66 0.67 16.47 16 8 O -0.57 -23.45 15.78 16.01 0.25 -23.20 16 9 N -0.58 -16.94 2.79 -801.87 -2.24 -19.18 16 10 C 0.10 1.90 6.08 86.65 0.53 2.43 16 11 C -0.12 -2.55 6.11 30.70 0.19 -2.36 16 12 C -0.12 -3.97 5.31 30.55 0.16 -3.81 16 13 C 0.16 6.38 3.29 44.82 0.15 6.53 16 14 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.15 5.87 2.72 45.85 0.12 6.00 16 16 H 0.06 2.84 7.10 -2.39 -0.02 2.82 16 17 C -0.13 -5.55 6.45 31.31 0.20 -5.35 16 18 C 0.19 9.93 5.40 86.66 0.47 10.39 16 19 N -0.62 -31.85 2.93 -672.14 -1.97 -33.82 16 20 C -0.24 -13.22 10.26 84.03 0.86 -12.35 16 21 H 0.09 4.55 7.84 -2.91 -0.02 4.53 16 22 C -0.07 -3.85 5.47 84.86 0.46 -3.38 16 23 N -0.95 -58.34 10.34 21.65 0.22 -58.12 16 24 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 28 N -0.43 -9.41 11.54 -172.60 -1.99 -11.41 16 29 O 0.09 1.64 11.19 71.27 0.80 2.44 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.13 8.14 -2.39 -0.02 -0.14 16 33 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.12 2.20 8.02 -2.39 -0.02 2.18 16 35 H 0.12 2.18 7.33 -2.39 -0.02 2.16 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.12 1.48 5.81 -2.39 -0.01 1.46 16 38 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.80 8.02 -2.39 -0.02 1.79 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 43 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.01 0.65 7.22 -2.39 -0.02 0.63 16 45 H 0.01 0.65 7.65 -2.39 -0.02 0.63 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -79.88 372.23 3.39 -76.48 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.99 Total: 8.79 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.00 Total: 18.24 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -5.98 Total: -122.52 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.36 Total: -29.42 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.88 3.39 -76.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049536877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.054 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds