Wall clock time and date at job start Tue Mar 31 2020 19:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34861 * 119.10102 * 2 1 4 4 C 1.41671 * 119.34078 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.07028 * 179.72209 * 4 3 2 6 6 C 1.47099 * 117.86019 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88116 * 179.97438 * 6 4 3 8 8 O 1.21619 * 120.00081 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00100 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99787 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47061 * 180.02562 * 10 9 7 12 12 H 1.09009 * 109.67695 * 301.04603 * 11 10 9 13 13 C 1.53297 * 109.68498 * 180.52765 * 11 10 9 14 14 O 1.42956 * 109.22326 * 187.97113 * 13 11 10 15 15 C 1.42968 * 114.16779 * 62.57976 * 14 13 11 16 16 C 1.53296 * 109.22243 * 297.42132 * 15 14 13 17 17 N 1.47146 * 109.68482 * 61.55727 * 11 10 9 18 18 C 1.36939 * 120.98215 * 350.24114 * 17 11 10 19 19 H 1.07999 * 120.00057 * 45.84428 * 18 17 11 20 20 C 1.38807 * 119.99981 * 225.84617 * 18 17 11 21 21 N 1.31623 * 120.00044 * 210.97284 * 20 18 17 22 22 Si 1.86798 * 120.00338 * 30.97210 * 20 18 17 23 23 H 1.48503 * 109.46932 * 84.73491 * 22 20 18 24 24 H 1.48496 * 109.47539 * 204.73738 * 22 20 18 25 25 H 1.48504 * 109.46917 * 324.74036 * 22 20 18 26 26 C 1.37990 * 118.23814 * 359.97438 * 6 4 3 27 27 N 1.34345 * 120.36832 * 0.03897 * 26 6 4 28 28 C 1.46504 * 118.80058 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47104 * 95.43396 * 1 2 3 30 30 H 1.09002 * 109.46996 * 215.43841 * 1 2 3 31 31 H 1.09000 * 109.46806 * 335.43384 * 1 2 3 32 32 H 1.07999 * 120.33507 * 359.95518 * 3 2 1 33 33 H 0.97001 * 119.99797 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47393 * 299.99581 * 10 9 7 35 35 H 1.09002 * 109.46948 * 60.00060 * 10 9 7 36 36 H 1.09001 * 109.50891 * 307.89795 * 13 11 10 37 37 H 1.09005 * 109.50799 * 67.99617 * 13 11 10 38 38 H 1.09001 * 109.50548 * 57.34182 * 15 14 13 39 39 H 1.08993 * 109.51334 * 177.49188 * 15 14 13 40 40 H 1.08998 * 109.67806 * 172.02837 * 16 15 14 41 41 H 1.09001 * 109.67636 * 292.57892 * 16 15 14 42 42 H 0.96996 * 120.00240 * 179.97438 * 21 20 18 43 43 H 1.08003 * 119.80997 * 180.02562 * 26 6 4 44 44 H 1.08991 * 109.47607 * 265.40390 * 28 27 26 45 45 H 1.09006 * 109.46902 * 25.40819 * 28 27 26 46 46 H 1.08997 * 109.46649 * 145.40037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2326 -0.0045 6 6 4.2725 -0.1133 0.0005 7 6 5.7436 -0.1848 0.0005 8 8 6.4021 0.8377 0.0001 9 7 6.3601 -1.3833 0.0010 10 6 7.8234 -1.4543 0.0004 11 6 8.2628 -2.9198 0.0005 12 1 7.8616 -3.4233 0.8802 13 6 9.7937 -2.9999 0.0132 14 8 10.1955 -4.3590 -0.1739 15 6 9.8017 -4.9182 -1.4294 16 6 8.2713 -4.9364 -1.5160 17 7 7.7727 -3.5844 -1.2174 18 6 6.8794 -2.9628 -2.0487 19 1 7.0338 -1.9327 -2.3339 20 6 5.7756 -3.6568 -2.5247 21 7 5.2758 -3.3670 -3.7074 22 14 4.9993 -5.0022 -1.4870 23 1 4.0359 -4.3972 -0.5324 24 1 4.2860 -5.9593 -2.3703 25 1 6.0588 -5.7194 -0.7332 26 6 3.5076 -1.2618 0.0005 27 7 2.1664 -1.1846 -0.0003 28 6 1.3880 -2.4258 -0.0008 29 1 -0.3633 -0.0973 -1.0230 30 1 -0.3633 -0.8373 0.5959 31 1 -0.3633 0.9347 0.4273 32 1 1.6137 2.1083 -0.0007 33 1 5.8349 -2.1988 0.0017 34 1 8.2108 -0.9593 -0.8900 35 1 8.2115 -0.9581 0.8900 36 1 10.1969 -2.3866 -0.7927 37 1 10.1692 -2.6368 0.9699 38 1 10.2050 -4.3119 -2.2404 39 1 10.1831 -5.9360 -1.5102 40 1 7.9639 -5.2278 -2.5203 41 1 7.8709 -5.6434 -0.7893 42 1 4.5047 -3.8522 -4.0402 43 1 3.9900 -2.2281 0.0009 44 1 1.1257 -2.6898 -1.0253 45 1 1.9811 -3.2268 0.4404 46 1 0.4780 -2.2841 0.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050965814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:04 Heat of formation + Delta-G solvation = -38.441964 kcal Electronic energy + Delta-G solvation = -30607.617190 eV Core-core repulsion = 26499.496487 eV Total energy + Delta-G solvation = -4108.120703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.04948 -39.13833 -38.34364 -37.37866 -35.28501 -33.62544 -33.31909 -32.52546 -31.74869 -30.85231 -28.35300 -27.47345 -26.86500 -25.36470 -23.94012 -23.37832 -22.26274 -21.32583 -20.14984 -19.85231 -17.90364 -17.40756 -16.80630 -16.05904 -15.99545 -15.90678 -15.70527 -15.51121 -14.97272 -14.67014 -14.40158 -14.21088 -14.10489 -13.99753 -13.59491 -13.44207 -13.39821 -13.10615 -13.01016 -12.81042 -12.65886 -12.40385 -12.11036 -11.93796 -11.87257 -11.80425 -11.52832 -10.97597 -10.89835 -10.77714 -10.41992 -9.97999 -9.75853 -9.49180 -9.34721 -9.28107 -8.74457 -8.60999 -8.20752 -7.71269 -6.81277 -6.28318 -3.69276 1.09837 1.48067 2.44205 2.94018 3.19155 3.26417 3.49959 3.83735 4.12308 4.27728 4.29788 4.33999 4.43125 4.63242 4.66393 4.77548 4.84246 5.03034 5.12504 5.13591 5.23070 5.28135 5.48504 5.50751 5.55861 5.62841 5.73323 5.83412 5.86738 5.93275 5.95672 5.95858 6.11932 6.19562 6.32021 6.45336 6.54564 6.64975 6.69322 6.80377 6.91349 7.23534 7.64123 7.79382 8.26845 8.34137 8.47034 8.75312 9.07400 9.44438 9.96128 10.85863 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004610 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.784866 B = 6072.869279 C = 7432.593173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.275 4.275 4 C 0.410 3.590 5 O -0.486 6.486 6 C -0.287 4.287 7 C 0.571 3.429 8 O -0.531 6.531 9 N -0.699 5.699 10 C 0.142 3.858 11 C 0.119 3.881 12 H 0.042 0.958 13 C 0.056 3.944 14 O -0.390 6.390 15 C 0.043 3.957 16 C 0.108 3.892 17 N -0.600 5.600 18 C -0.269 4.269 19 H 0.081 0.919 20 C 0.051 3.949 21 N -0.871 5.871 22 Si 0.832 3.168 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.254 1.254 26 C 0.175 3.825 27 N -0.470 5.470 28 C 0.047 3.953 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.166 0.834 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 -3.454 8.385 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 C -0.300 4.300 4 C 0.296 3.704 5 O -0.368 6.368 6 C -0.298 4.298 7 C 0.358 3.642 8 O -0.409 6.409 9 N -0.351 5.351 10 C 0.017 3.983 11 C 0.013 3.987 12 H 0.060 0.940 13 C -0.023 4.023 14 O -0.308 6.308 15 C -0.035 4.035 16 C -0.017 4.017 17 N -0.327 5.327 18 C -0.398 4.398 19 H 0.098 0.902 20 C -0.152 4.152 21 N -0.509 5.509 22 Si 0.658 3.342 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.179 1.179 26 C 0.045 3.955 27 N -0.157 5.157 28 C -0.094 4.094 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.183 0.817 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.887 -2.439 8.348 12.435 hybrid contribution -1.154 -1.480 0.033 1.877 sum -10.041 -3.919 8.381 13.654 Atomic orbital electron populations 1.21169 0.88337 1.04684 1.04073 1.20241 0.94693 0.85118 0.95047 1.22214 0.96426 0.96916 1.14398 1.18131 0.88141 0.87929 0.76190 1.90785 1.70009 1.33223 1.42733 1.22568 0.94838 0.94650 1.17739 1.17371 0.85924 0.83708 0.77212 1.90783 1.65871 1.34201 1.50020 1.45735 1.07317 1.07655 1.74422 1.21067 0.80473 0.95446 1.01269 1.21609 0.93534 0.92531 0.91005 0.93995 1.22877 0.94881 0.83458 1.01077 1.87817 1.78228 1.27156 1.37624 1.23115 0.96995 0.97717 0.85646 1.22021 0.91707 0.87738 1.00264 1.44379 1.50346 1.15232 1.22720 1.18685 1.00574 0.99019 1.21486 0.90200 1.25744 0.96959 0.96597 0.95919 1.70038 1.24199 1.41729 1.14979 0.87566 0.80786 0.83709 0.82099 1.21828 1.21969 1.17862 1.22381 0.81937 1.00433 0.90791 1.42503 1.05391 1.07000 1.60823 1.22557 0.97552 0.84684 1.04632 0.89374 0.90285 0.89040 0.83293 0.76481 0.91147 0.92197 0.92944 0.89488 0.93225 0.89973 0.90679 0.94796 0.92587 0.81717 0.89887 0.88993 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 9.35 36.01 0.34 -0.45 16 2 C 0.16 1.78 6.64 -82.14 -0.55 1.23 16 3 C -0.28 -4.06 9.57 -39.47 -0.38 -4.44 16 4 C 0.41 8.31 6.97 -34.68 -0.24 8.07 16 5 O -0.49 -11.96 16.41 -15.18 -0.25 -12.21 16 6 C -0.29 -5.67 6.05 -102.71 -0.62 -6.29 16 7 C 0.57 12.74 7.77 -12.58 -0.10 12.64 16 8 O -0.53 -13.84 15.57 -14.75 -0.23 -14.07 16 9 N -0.70 -14.07 4.03 -61.43 -0.25 -14.32 16 10 C 0.14 2.72 4.48 -4.04 -0.02 2.70 16 11 C 0.12 2.20 3.20 -67.42 -0.22 1.99 16 12 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 13 C 0.06 0.93 6.29 37.31 0.23 1.16 16 14 O -0.39 -6.92 10.74 -35.23 -0.38 -7.30 16 15 C 0.04 0.74 6.99 37.31 0.26 1.00 16 16 C 0.11 2.12 4.85 -3.53 -0.02 2.10 16 17 N -0.60 -12.68 2.41 -164.29 -0.40 -13.08 16 18 C -0.27 -6.55 6.66 -15.06 -0.10 -6.65 16 19 H 0.08 2.25 6.87 -52.49 -0.36 1.89 16 20 C 0.05 1.26 5.00 -17.43 -0.09 1.17 16 21 N -0.87 -23.53 13.97 55.49 0.78 -22.76 16 22 Si 0.83 17.55 27.48 -169.99 -4.67 12.88 16 23 H -0.29 -5.43 6.48 56.52 0.37 -5.07 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.25 -5.34 5.08 56.52 0.29 -5.05 16 26 C 0.17 2.75 9.79 -16.54 -0.16 2.59 16 27 N -0.47 -5.71 2.97 -119.75 -0.36 -6.07 16 28 C 0.05 0.38 10.01 59.85 0.60 0.98 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.33 5.96 -51.93 -0.31 0.02 16 31 H 0.09 0.47 7.98 -51.93 -0.41 0.06 16 32 H 0.15 1.87 8.01 -52.49 -0.42 1.45 16 33 H 0.40 7.75 5.39 -40.82 -0.22 7.53 16 34 H 0.07 1.51 7.50 -51.93 -0.39 1.12 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.56 7.48 -51.93 -0.39 1.17 16 41 H 0.03 0.68 6.45 -51.93 -0.33 0.34 16 42 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.17 2.55 5.67 -52.48 -0.30 2.26 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.73 7.88 -51.93 -0.41 0.32 16 46 H 0.09 0.43 5.86 -51.93 -0.30 0.12 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -35.59 364.37 -7.83 -43.42 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.52 Total: 10.21 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: -1.05 Total: 17.80 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.22 Total: -56.22 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.86 Total: -33.58 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -4.67 Total: 12.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.59 -7.83 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.978 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds