Wall clock time and date at job start Tue Mar 31 2020 19:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34861 * 119.10102 * 2 1 4 4 C 1.41671 * 119.34078 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.07028 * 179.72209 * 4 3 2 6 6 C 1.47099 * 117.86019 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88116 * 179.97438 * 6 4 3 8 8 O 1.21619 * 120.00081 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00100 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99787 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47061 * 180.02562 * 10 9 7 12 12 H 1.09009 * 109.67695 * 301.04603 * 11 10 9 13 13 C 1.53297 * 109.68498 * 180.52765 * 11 10 9 14 14 O 1.42956 * 109.22326 * 187.97113 * 13 11 10 15 15 C 1.42968 * 114.16779 * 62.57976 * 14 13 11 16 16 C 1.53296 * 109.22243 * 297.42132 * 15 14 13 17 17 N 1.47146 * 109.68482 * 61.55727 * 11 10 9 18 18 C 1.36939 * 120.98215 * 350.24114 * 17 11 10 19 19 H 1.07999 * 120.00057 * 45.84428 * 18 17 11 20 20 C 1.38807 * 119.99981 * 225.84617 * 18 17 11 21 21 N 1.31623 * 120.00044 * 210.97284 * 20 18 17 22 22 Si 1.86798 * 120.00338 * 30.97210 * 20 18 17 23 23 H 1.48503 * 109.46932 * 84.73491 * 22 20 18 24 24 H 1.48496 * 109.47539 * 204.73738 * 22 20 18 25 25 H 1.48504 * 109.46917 * 324.74036 * 22 20 18 26 26 C 1.37990 * 118.23814 * 359.97438 * 6 4 3 27 27 N 1.34345 * 120.36832 * 0.03897 * 26 6 4 28 28 C 1.46504 * 118.80058 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47104 * 95.43396 * 1 2 3 30 30 H 1.09002 * 109.46996 * 215.43841 * 1 2 3 31 31 H 1.09000 * 109.46806 * 335.43384 * 1 2 3 32 32 H 1.07999 * 120.33507 * 359.95518 * 3 2 1 33 33 H 0.97001 * 119.99797 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47393 * 299.99581 * 10 9 7 35 35 H 1.09002 * 109.46948 * 60.00060 * 10 9 7 36 36 H 1.09001 * 109.50891 * 307.89795 * 13 11 10 37 37 H 1.09005 * 109.50799 * 67.99617 * 13 11 10 38 38 H 1.09001 * 109.50548 * 57.34182 * 15 14 13 39 39 H 1.08993 * 109.51334 * 177.49188 * 15 14 13 40 40 H 1.08998 * 109.67806 * 172.02837 * 16 15 14 41 41 H 1.09001 * 109.67636 * 292.57892 * 16 15 14 42 42 H 0.96996 * 120.00240 * 179.97438 * 21 20 18 43 43 H 1.08003 * 119.80997 * 180.02562 * 26 6 4 44 44 H 1.08991 * 109.47607 * 265.40390 * 28 27 26 45 45 H 1.09006 * 109.46902 * 25.40819 * 28 27 26 46 46 H 1.08997 * 109.46649 * 145.40037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2326 -0.0045 6 6 4.2725 -0.1133 0.0005 7 6 5.7436 -0.1848 0.0005 8 8 6.4021 0.8377 0.0001 9 7 6.3601 -1.3833 0.0010 10 6 7.8234 -1.4543 0.0004 11 6 8.2628 -2.9198 0.0005 12 1 7.8616 -3.4233 0.8802 13 6 9.7937 -2.9999 0.0132 14 8 10.1955 -4.3590 -0.1739 15 6 9.8017 -4.9182 -1.4294 16 6 8.2713 -4.9364 -1.5160 17 7 7.7727 -3.5844 -1.2174 18 6 6.8794 -2.9628 -2.0487 19 1 7.0338 -1.9327 -2.3339 20 6 5.7756 -3.6568 -2.5247 21 7 5.2758 -3.3670 -3.7074 22 14 4.9993 -5.0022 -1.4870 23 1 4.0359 -4.3972 -0.5324 24 1 4.2860 -5.9593 -2.3703 25 1 6.0588 -5.7194 -0.7332 26 6 3.5076 -1.2618 0.0005 27 7 2.1664 -1.1846 -0.0003 28 6 1.3880 -2.4258 -0.0008 29 1 -0.3633 -0.0973 -1.0230 30 1 -0.3633 -0.8373 0.5959 31 1 -0.3633 0.9347 0.4273 32 1 1.6137 2.1083 -0.0007 33 1 5.8349 -2.1988 0.0017 34 1 8.2108 -0.9593 -0.8900 35 1 8.2115 -0.9581 0.8900 36 1 10.1969 -2.3866 -0.7927 37 1 10.1692 -2.6368 0.9699 38 1 10.2050 -4.3119 -2.2404 39 1 10.1831 -5.9360 -1.5102 40 1 7.9639 -5.2278 -2.5203 41 1 7.8709 -5.6434 -0.7893 42 1 4.5047 -3.8522 -4.0402 43 1 3.9900 -2.2281 0.0009 44 1 1.1257 -2.6898 -1.0253 45 1 1.9811 -3.2268 0.4404 46 1 0.4780 -2.2841 0.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050965814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:04 Heat of formation + Delta-G solvation = -64.464417 kcal Electronic energy + Delta-G solvation = -30608.745608 eV Core-core repulsion = 26499.496487 eV Total energy + Delta-G solvation = -4109.249121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25029 -40.70039 -39.87290 -38.87714 -36.91547 -35.27022 -34.49834 -33.84260 -33.45250 -32.33330 -29.48438 -29.00190 -27.77670 -26.81105 -25.20583 -25.09246 -23.73844 -22.61744 -21.74651 -21.37496 -19.35628 -18.68422 -18.42405 -17.51713 -17.30113 -17.20271 -17.01413 -16.87505 -16.54072 -16.25905 -15.98896 -15.58263 -15.55776 -15.52943 -14.97662 -14.77397 -14.55311 -14.35534 -14.22447 -13.92994 -13.85669 -13.80778 -13.47902 -13.40677 -13.08095 -12.77132 -12.64245 -12.54711 -12.48785 -12.25416 -12.08785 -11.61864 -11.32996 -11.16443 -10.87735 -10.51630 -10.41093 -10.30083 -9.91241 -9.06058 -8.55417 -8.19554 -5.61688 -0.22729 0.28743 1.27602 1.41042 1.47593 1.58761 1.92584 2.28979 2.49390 2.79972 2.86899 3.01368 3.16145 3.27568 3.56229 3.63031 3.76253 3.98727 4.09824 4.19282 4.21369 4.27654 4.27918 4.39397 4.41340 4.46650 4.57933 4.61645 4.62862 4.71145 4.74470 4.76969 4.82409 4.84027 4.97399 5.05724 5.10755 5.24775 5.28937 5.58889 5.64993 5.78222 5.92917 6.23216 6.32412 6.69847 6.93946 7.06264 7.40119 7.57001 8.11178 8.99258 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004610 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.784866 B = 6072.869279 C = 7432.593173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.185 3.815 3 C -0.302 4.302 4 C 0.387 3.613 5 O -0.562 6.562 6 C -0.341 4.341 7 C 0.563 3.437 8 O -0.586 6.586 9 N -0.689 5.689 10 C 0.144 3.856 11 C 0.124 3.876 12 H 0.061 0.939 13 C 0.058 3.942 14 O -0.390 6.390 15 C 0.049 3.951 16 C 0.106 3.894 17 N -0.610 5.610 18 C -0.259 4.259 19 H 0.023 0.977 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.898 3.102 23 H -0.246 1.246 24 H -0.304 1.304 25 H -0.247 1.247 26 C 0.207 3.793 27 N -0.458 5.458 28 C 0.029 3.971 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.403 0.597 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.121 0.879 38 H 0.040 0.960 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.174 0.826 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -7.205 10.647 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 C -0.325 4.325 4 C 0.280 3.720 5 O -0.451 6.451 6 C -0.351 4.351 7 C 0.352 3.648 8 O -0.468 6.468 9 N -0.340 5.340 10 C 0.020 3.980 11 C 0.018 3.982 12 H 0.078 0.922 13 C -0.020 4.020 14 O -0.308 6.308 15 C -0.029 4.029 16 C -0.019 4.019 17 N -0.338 5.338 18 C -0.389 4.389 19 H 0.041 0.959 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.722 3.278 23 H -0.171 1.171 24 H -0.232 1.232 25 H -0.171 1.171 26 C 0.073 3.927 27 N -0.141 5.141 28 C -0.109 4.109 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.240 0.760 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.139 0.861 38 H 0.059 0.941 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.191 0.809 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.131 -6.265 10.652 17.317 hybrid contribution -0.220 -0.454 -0.757 0.910 sum -12.351 -6.719 9.895 17.193 Atomic orbital electron populations 1.21421 0.83227 1.07229 1.06029 1.21007 0.97387 0.83538 0.90331 1.22156 0.93669 0.99509 1.17136 1.18879 0.90531 0.87282 0.75319 1.90729 1.71725 1.35053 1.47578 1.22396 0.93789 0.96295 1.22636 1.17912 0.87339 0.83382 0.76211 1.90728 1.67312 1.35908 1.52816 1.45652 1.07628 1.07212 1.73546 1.21064 0.80215 0.96308 1.00403 1.21699 0.94889 0.91279 0.90297 0.92180 1.22940 0.93306 0.83216 1.02573 1.87829 1.78019 1.27313 1.37637 1.23109 0.95032 0.99444 0.85347 1.22067 0.93578 0.86739 0.99495 1.44417 1.50133 1.15845 1.23358 1.18185 1.01806 0.96968 1.21901 0.95947 1.26232 0.97062 0.99733 0.96254 1.70181 1.25083 1.44393 1.17030 0.86541 0.80488 0.80230 0.80500 1.17101 1.23152 1.17135 1.22345 0.83616 0.99082 0.87706 1.43089 1.04441 1.09336 1.57265 1.23112 0.98813 0.82473 1.06537 0.87446 0.86766 0.87389 0.81646 0.75964 0.94692 0.90407 0.93978 0.86131 0.94148 0.86606 0.92374 0.93906 0.92632 0.80915 0.88677 0.88167 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.35 71.24 0.67 -0.13 16 2 C 0.18 3.60 6.64 41.20 0.27 3.87 16 3 C -0.30 -8.84 9.57 22.34 0.21 -8.62 16 4 C 0.39 16.81 6.97 25.45 0.18 16.99 16 5 O -0.56 -30.57 16.41 13.53 0.22 -30.34 16 6 C -0.34 -14.12 6.05 -18.63 -0.11 -14.23 16 7 C 0.56 27.02 7.77 86.62 0.67 27.69 16 8 O -0.59 -33.58 15.57 15.05 0.23 -33.35 16 9 N -0.69 -28.95 4.03 -466.50 -1.88 -30.83 16 10 C 0.14 5.78 4.48 86.38 0.39 6.17 16 11 C 0.12 4.49 3.20 44.97 0.14 4.63 16 12 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 13 C 0.06 1.85 6.29 72.08 0.45 2.31 16 14 O -0.39 -12.84 10.74 -148.98 -1.60 -14.44 16 15 C 0.05 1.57 6.99 72.08 0.50 2.07 16 16 C 0.11 4.01 4.85 86.35 0.42 4.43 16 17 N -0.61 -25.73 2.41 -673.71 -1.63 -27.36 16 18 C -0.26 -13.06 6.66 84.03 0.56 -12.50 16 19 H 0.02 1.39 6.87 -2.91 -0.02 1.37 16 20 C 0.01 0.34 5.00 84.86 0.42 0.77 16 21 N -0.93 -51.41 13.97 21.65 0.30 -51.11 16 22 Si 0.90 34.79 27.48 68.60 1.88 36.67 16 23 H -0.25 -7.64 6.48 99.48 0.64 -6.99 16 24 H -0.30 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.25 -9.28 5.08 99.48 0.51 -8.77 16 26 C 0.21 6.24 9.79 84.25 0.83 7.07 16 27 N -0.46 -9.39 2.97 -532.77 -1.58 -10.97 16 28 C 0.03 0.28 10.01 127.77 1.28 1.56 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.04 5.96 -2.39 -0.01 0.02 16 31 H 0.11 0.50 7.98 -2.39 -0.02 0.49 16 32 H 0.17 4.13 8.01 -2.91 -0.02 4.11 16 33 H 0.40 15.70 5.39 -92.71 -0.50 15.20 16 34 H 0.03 1.64 7.50 -2.39 -0.02 1.62 16 35 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 3.06 8.14 -2.38 -0.02 3.05 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.06 2.38 7.48 -2.39 -0.02 2.36 16 41 H 0.04 1.57 6.45 -2.39 -0.02 1.56 16 42 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 43 H 0.17 4.91 5.67 -2.91 -0.02 4.90 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.92 7.88 -2.38 -0.02 0.90 16 46 H 0.14 0.13 5.86 -2.39 -0.01 0.11 16 Total: -1.00 -89.70 364.37 3.09 -86.61 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.25 Total: 33.04 kcal Atomic # 6 Polarization: 35.19 SS G_CDS: 6.89 Total: 42.08 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.79 Total: -120.27 kcal Atomic # 8 Polarization: -76.99 SS G_CDS: -1.14 Total: -78.13 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 1.88 Total: 36.67 kcal Total: -89.70 3.09 -86.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.145 kcal (2) G-P(sol) polarization free energy of solvation -89.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds