Wall clock time and date at job start Tue Mar 31 2020 19:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34869 * 119.10337 * 2 1 4 4 C 1.41667 * 119.33571 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06466 * 179.97438 * 4 3 2 6 6 C 1.47092 * 117.86751 * 0.02562 * 4 3 2 7 7 C 1.47291 * 120.88330 * 180.02562 * 6 4 3 8 8 O 1.21618 * 119.99981 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00219 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00226 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47211 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.68005 * 61.33326 * 11 10 9 13 13 C 1.53299 * 109.68100 * 181.89055 * 11 10 9 14 14 O 1.42962 * 109.22105 * 172.02612 * 13 11 10 15 15 C 1.42963 * 114.17051 * 297.41737 * 14 13 11 16 16 C 1.53300 * 109.21875 * 62.57946 * 15 14 13 17 17 N 1.47147 * 108.38672 * 307.70186 * 16 15 14 18 18 C 1.36938 * 120.98177 * 230.80899 * 17 16 15 19 19 H 1.07997 * 120.00025 * 145.85059 * 18 17 16 20 20 C 1.38813 * 120.00113 * 325.85233 * 18 17 16 21 21 N 1.31616 * 119.99579 * 349.76139 * 20 18 17 22 22 Si 1.86801 * 120.00250 * 169.76023 * 20 18 17 23 23 H 1.48501 * 109.47107 * 59.99732 * 22 20 18 24 24 H 1.48496 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46901 * 300.00238 * 22 20 18 26 26 C 1.37989 * 118.23567 * 0.26412 * 6 4 3 27 27 N 1.34346 * 120.37275 * 359.43203 * 26 6 4 28 28 C 1.46494 * 118.80876 * 180.30672 * 27 26 6 29 29 H 1.09001 * 109.47063 * 95.79678 * 1 2 3 30 30 H 1.08998 * 109.47500 * 215.79982 * 1 2 3 31 31 H 1.09000 * 109.46703 * 335.80278 * 1 2 3 32 32 H 1.07997 * 120.32876 * 0.02562 * 3 2 1 33 33 H 0.96996 * 119.99836 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47132 * 59.99302 * 10 9 7 35 35 H 1.09003 * 109.46700 * 299.99527 * 10 9 7 36 36 H 1.09005 * 109.51164 * 291.94528 * 13 11 10 37 37 H 1.08998 * 109.51616 * 52.04939 * 13 11 10 38 38 H 1.08992 * 109.51599 * 182.50521 * 15 14 13 39 39 H 1.09004 * 109.50621 * 302.66284 * 15 14 13 40 40 H 1.09002 * 109.67722 * 187.98084 * 16 15 14 41 41 H 1.08994 * 109.67973 * 67.42613 * 16 15 14 42 42 H 0.97006 * 119.99562 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.81328 * 179.70606 * 26 6 4 44 44 H 1.09000 * 109.46965 * 263.82376 * 28 27 26 45 45 H 1.09007 * 109.47443 * 23.82260 * 28 27 26 46 46 H 1.09002 * 109.47693 * 143.82570 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2325 0.0001 6 6 4.2724 -0.1134 0.0005 7 6 5.7436 -0.1849 0.0016 8 8 6.4021 0.8376 0.0021 9 7 6.3601 -1.3834 0.0021 10 6 7.8234 -1.4546 0.0027 11 6 8.2627 -2.9201 0.0038 12 1 7.8968 -3.4137 -0.8966 13 6 9.7928 -3.0003 0.0520 14 8 10.1871 -4.3615 0.2399 15 6 9.7431 -4.9348 1.4721 16 6 8.2104 -4.9535 1.4966 17 7 7.7247 -3.5979 1.1939 18 6 6.8036 -2.9830 1.9993 19 1 6.8433 -1.9138 2.1466 20 6 5.8187 -3.7338 2.6263 21 7 5.6418 -4.9952 2.2947 22 14 4.7445 -2.9541 3.9407 23 1 4.0041 -1.8062 3.3581 24 1 3.7782 -3.9596 4.4509 25 1 5.5979 -2.4768 5.0583 26 6 3.5076 -1.2619 -0.0056 27 7 2.1663 -1.1848 0.0001 28 6 1.3879 -2.4258 0.0001 29 1 -0.3633 -0.1038 -1.0224 30 1 -0.3634 -0.8335 0.6011 31 1 -0.3633 0.9374 0.4212 32 1 1.6137 2.1083 0.0004 33 1 5.8349 -2.1989 0.0021 34 1 8.2109 -0.9587 0.8926 35 1 8.2115 -0.9592 -0.8874 36 1 10.2066 -2.6275 -0.8850 37 1 10.1633 -2.3956 0.8797 38 1 10.1211 -5.9535 1.5568 39 1 10.1133 -4.3377 2.3055 40 1 7.8628 -5.2560 2.4845 41 1 7.8399 -5.6522 0.7466 42 1 4.9533 -5.5198 2.7326 43 1 3.9898 -2.2282 -0.0106 44 1 1.0970 -2.6722 -1.0211 45 1 1.9929 -3.2343 0.4106 46 1 0.4945 -2.2944 0.6107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050965817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:08 Heat of formation + Delta-G solvation = -41.834514 kcal Electronic energy + Delta-G solvation = -30545.435602 eV Core-core repulsion = 26437.167787 eV Total energy + Delta-G solvation = -4108.267815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07054 -39.07334 -38.25076 -37.39556 -35.21399 -33.62972 -33.34257 -32.53838 -31.38597 -30.46258 -28.33389 -27.21222 -26.86980 -25.32798 -23.93174 -23.50649 -22.03788 -21.25981 -20.09088 -19.69628 -17.93961 -17.42130 -16.69319 -16.07127 -16.00141 -15.81312 -15.57916 -15.46594 -14.65375 -14.62508 -14.35107 -14.24644 -13.86647 -13.84419 -13.56087 -13.45882 -13.28053 -13.11310 -13.01967 -12.81903 -12.54272 -12.41799 -11.93119 -11.87050 -11.76831 -11.53976 -11.12821 -10.96441 -10.77675 -10.45731 -10.33809 -10.13208 -9.68854 -9.50098 -9.37295 -9.07771 -8.76344 -8.72955 -8.18955 -7.73812 -6.76114 -6.00560 -3.52095 1.06719 1.45486 2.43018 3.17711 3.23386 3.32453 3.46711 3.84361 4.10582 4.25128 4.26434 4.46155 4.51710 4.63484 4.77478 4.84559 5.07463 5.09520 5.14006 5.15780 5.23844 5.26956 5.48632 5.59127 5.62944 5.73280 5.81420 5.86639 5.91822 6.02077 6.12761 6.15772 6.27094 6.29647 6.48192 6.55138 6.67550 6.77614 6.88977 7.01184 7.23570 7.40284 7.64983 7.84063 8.22514 8.37309 8.43606 8.97544 9.06129 9.56669 10.18451 11.04914 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.004532 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.055392 B = 6177.002804 C = 7380.047196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.277 4.277 4 C 0.409 3.591 5 O -0.487 6.487 6 C -0.293 4.293 7 C 0.567 3.433 8 O -0.534 6.534 9 N -0.701 5.701 10 C 0.139 3.861 11 C 0.126 3.874 12 H 0.042 0.958 13 C 0.055 3.945 14 O -0.392 6.392 15 C 0.034 3.966 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.073 0.927 20 C 0.010 3.990 21 N -0.900 5.900 22 Si 0.887 3.113 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.177 3.823 27 N -0.471 5.471 28 C 0.047 3.953 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.407 0.593 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.174 0.826 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 -0.514 -5.440 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 C -0.301 4.301 4 C 0.295 3.705 5 O -0.369 6.369 6 C -0.304 4.304 7 C 0.354 3.646 8 O -0.412 6.412 9 N -0.354 5.354 10 C 0.014 3.986 11 C 0.019 3.981 12 H 0.060 0.940 13 C -0.024 4.024 14 O -0.311 6.311 15 C -0.044 4.044 16 C 0.020 3.980 17 N -0.317 5.317 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.544 5.544 22 Si 0.716 3.284 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.207 1.207 26 C 0.047 3.953 27 N -0.158 5.158 28 C -0.094 4.094 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.191 0.809 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.917 0.378 -5.500 11.346 hybrid contribution -1.101 -0.265 1.176 1.633 sum -11.017 0.113 -4.323 11.836 Atomic orbital electron populations 1.21164 0.88342 1.04868 1.03900 1.20256 0.94719 0.85193 0.94983 1.22225 0.96455 0.96943 1.14484 1.18147 0.88144 0.87995 0.76202 1.90783 1.70017 1.33267 1.42830 1.22568 0.94862 0.94705 1.18237 1.17428 0.85957 0.83813 0.77423 1.90784 1.65892 1.34331 1.50184 1.45918 1.07467 1.07957 1.74074 1.21109 0.80466 0.95979 1.01015 1.21448 0.93027 0.91826 0.91832 0.94046 1.22878 0.95292 0.83586 1.00615 1.87803 1.76543 1.26542 1.40186 1.23339 0.98473 0.97020 0.85519 1.21369 0.88226 0.86599 1.01784 1.44066 1.47923 1.14868 1.24827 1.19243 1.04249 0.92983 1.21446 0.90962 1.25164 0.97195 0.96386 1.00174 1.69994 1.34286 1.07339 1.42747 0.86606 0.80606 0.78296 0.82888 1.20529 1.21544 1.20652 1.22455 0.81852 1.00667 0.90303 1.42557 1.05483 1.07057 1.60661 1.22563 0.97871 0.84830 1.04166 0.89468 0.90181 0.89083 0.83358 0.75444 0.91626 0.92284 0.89816 0.93425 0.90271 0.94108 0.89492 0.95151 0.93497 0.80935 0.90026 0.88274 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.35 36.01 0.34 -0.42 16 2 C 0.15 1.70 6.64 -82.13 -0.54 1.16 16 3 C -0.28 -3.98 9.57 -39.47 -0.38 -4.36 16 4 C 0.41 8.11 6.96 -34.68 -0.24 7.87 16 5 O -0.49 -11.80 16.41 -15.17 -0.25 -12.05 16 6 C -0.29 -5.58 6.05 -102.72 -0.62 -6.21 16 7 C 0.57 12.30 7.77 -12.58 -0.10 12.20 16 8 O -0.53 -13.67 15.57 -14.75 -0.23 -13.90 16 9 N -0.70 -13.82 3.72 -61.43 -0.23 -14.05 16 10 C 0.14 2.67 4.46 -4.05 -0.02 2.65 16 11 C 0.13 2.42 3.23 -67.42 -0.22 2.21 16 12 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.98 6.29 37.31 0.23 1.21 16 14 O -0.39 -7.51 10.74 -35.23 -0.38 -7.89 16 15 C 0.03 0.65 6.99 37.31 0.26 0.91 16 16 C 0.15 3.17 5.37 -3.53 -0.02 3.15 16 17 N -0.59 -13.12 3.01 -164.31 -0.49 -13.62 16 18 C -0.25 -5.95 6.83 -15.06 -0.10 -6.05 16 19 H 0.07 1.83 5.96 -52.49 -0.31 1.52 16 20 C 0.01 0.25 5.05 -17.43 -0.09 0.16 16 21 N -0.90 -22.32 11.33 55.49 0.63 -21.69 16 22 Si 0.89 19.74 29.57 -169.99 -5.03 14.71 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.18 2.62 9.80 -16.54 -0.16 2.46 16 27 N -0.47 -5.35 2.97 -119.75 -0.36 -5.71 16 28 C 0.05 0.33 9.97 59.84 0.60 0.93 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.36 6.01 -51.93 -0.31 0.05 16 31 H 0.09 0.48 7.98 -51.93 -0.41 0.06 16 32 H 0.15 1.83 8.01 -52.49 -0.42 1.41 16 33 H 0.41 7.82 5.27 -40.82 -0.22 7.61 16 34 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.08 6.53 -51.93 -0.34 1.74 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 6.21 8.31 -40.82 -0.34 5.87 16 43 H 0.17 2.40 6.28 -52.49 -0.33 2.07 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.76 7.86 -51.92 -0.41 0.35 16 46 H 0.09 0.45 5.96 -51.93 -0.31 0.14 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -34.99 368.01 -8.25 -43.23 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.40 Total: 7.55 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: -1.06 Total: 17.86 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.45 Total: -55.06 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.86 Total: -33.84 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.99 -8.25 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.399 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds