Wall clock time and date at job start Tue Mar 31 2020 19:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34869 * 119.10337 * 2 1 4 4 C 1.41667 * 119.33571 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06466 * 179.97438 * 4 3 2 6 6 C 1.47092 * 117.86751 * 0.02562 * 4 3 2 7 7 C 1.47291 * 120.88330 * 180.02562 * 6 4 3 8 8 O 1.21618 * 119.99981 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00219 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00226 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47211 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.68005 * 61.33326 * 11 10 9 13 13 C 1.53299 * 109.68100 * 181.89055 * 11 10 9 14 14 O 1.42962 * 109.22105 * 172.02612 * 13 11 10 15 15 C 1.42963 * 114.17051 * 297.41737 * 14 13 11 16 16 C 1.53300 * 109.21875 * 62.57946 * 15 14 13 17 17 N 1.47147 * 108.38672 * 307.70186 * 16 15 14 18 18 C 1.36938 * 120.98177 * 230.80899 * 17 16 15 19 19 H 1.07997 * 120.00025 * 145.85059 * 18 17 16 20 20 C 1.38813 * 120.00113 * 325.85233 * 18 17 16 21 21 N 1.31616 * 119.99579 * 349.76139 * 20 18 17 22 22 Si 1.86801 * 120.00250 * 169.76023 * 20 18 17 23 23 H 1.48501 * 109.47107 * 59.99732 * 22 20 18 24 24 H 1.48496 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46901 * 300.00238 * 22 20 18 26 26 C 1.37989 * 118.23567 * 0.26412 * 6 4 3 27 27 N 1.34346 * 120.37275 * 359.43203 * 26 6 4 28 28 C 1.46494 * 118.80876 * 180.30672 * 27 26 6 29 29 H 1.09001 * 109.47063 * 95.79678 * 1 2 3 30 30 H 1.08998 * 109.47500 * 215.79982 * 1 2 3 31 31 H 1.09000 * 109.46703 * 335.80278 * 1 2 3 32 32 H 1.07997 * 120.32876 * 0.02562 * 3 2 1 33 33 H 0.96996 * 119.99836 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47132 * 59.99302 * 10 9 7 35 35 H 1.09003 * 109.46700 * 299.99527 * 10 9 7 36 36 H 1.09005 * 109.51164 * 291.94528 * 13 11 10 37 37 H 1.08998 * 109.51616 * 52.04939 * 13 11 10 38 38 H 1.08992 * 109.51599 * 182.50521 * 15 14 13 39 39 H 1.09004 * 109.50621 * 302.66284 * 15 14 13 40 40 H 1.09002 * 109.67722 * 187.98084 * 16 15 14 41 41 H 1.08994 * 109.67973 * 67.42613 * 16 15 14 42 42 H 0.97006 * 119.99562 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.81328 * 179.70606 * 26 6 4 44 44 H 1.09000 * 109.46965 * 263.82376 * 28 27 26 45 45 H 1.09007 * 109.47443 * 23.82260 * 28 27 26 46 46 H 1.09002 * 109.47693 * 143.82570 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2325 0.0001 6 6 4.2724 -0.1134 0.0005 7 6 5.7436 -0.1849 0.0016 8 8 6.4021 0.8376 0.0021 9 7 6.3601 -1.3834 0.0021 10 6 7.8234 -1.4546 0.0027 11 6 8.2627 -2.9201 0.0038 12 1 7.8968 -3.4137 -0.8966 13 6 9.7928 -3.0003 0.0520 14 8 10.1871 -4.3615 0.2399 15 6 9.7431 -4.9348 1.4721 16 6 8.2104 -4.9535 1.4966 17 7 7.7247 -3.5979 1.1939 18 6 6.8036 -2.9830 1.9993 19 1 6.8433 -1.9138 2.1466 20 6 5.8187 -3.7338 2.6263 21 7 5.6418 -4.9952 2.2947 22 14 4.7445 -2.9541 3.9407 23 1 4.0041 -1.8062 3.3581 24 1 3.7782 -3.9596 4.4509 25 1 5.5979 -2.4768 5.0583 26 6 3.5076 -1.2619 -0.0056 27 7 2.1663 -1.1848 0.0001 28 6 1.3879 -2.4258 0.0001 29 1 -0.3633 -0.1038 -1.0224 30 1 -0.3634 -0.8335 0.6011 31 1 -0.3633 0.9374 0.4212 32 1 1.6137 2.1083 0.0004 33 1 5.8349 -2.1989 0.0021 34 1 8.2109 -0.9587 0.8926 35 1 8.2115 -0.9592 -0.8874 36 1 10.2066 -2.6275 -0.8850 37 1 10.1633 -2.3956 0.8797 38 1 10.1211 -5.9535 1.5568 39 1 10.1133 -4.3377 2.3055 40 1 7.8628 -5.2560 2.4845 41 1 7.8399 -5.6522 0.7466 42 1 4.9533 -5.5198 2.7326 43 1 3.9898 -2.2282 -0.0106 44 1 1.0970 -2.6722 -1.0211 45 1 1.9929 -3.2343 0.4106 46 1 0.4945 -2.2944 0.6107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050965817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:07 Heat of formation + Delta-G solvation = -65.911149 kcal Electronic energy + Delta-G solvation = -30546.479643 eV Core-core repulsion = 26437.167787 eV Total energy + Delta-G solvation = -4109.311856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22540 -40.65652 -39.80021 -38.85902 -36.88676 -35.28542 -34.48171 -33.77973 -33.01754 -32.07495 -29.38526 -28.86474 -27.73484 -26.79858 -25.24545 -25.14025 -23.55350 -22.56312 -21.59576 -21.30903 -19.36159 -18.64840 -18.27048 -17.56195 -17.24824 -17.12657 -16.96381 -16.76940 -16.27906 -16.19090 -16.08102 -15.53918 -15.40558 -15.37196 -14.94434 -14.75757 -14.54231 -14.27848 -14.14030 -13.84752 -13.83822 -13.53924 -13.35996 -13.11846 -12.91429 -12.78262 -12.71149 -12.55018 -12.51467 -12.15462 -11.99843 -11.87578 -11.30470 -11.15470 -10.69206 -10.58600 -10.49515 -10.28129 -9.86114 -9.04278 -8.57164 -7.87157 -5.40673 -0.20062 0.30701 1.35237 1.42516 1.45027 1.50576 1.94667 2.30327 2.44160 2.81256 3.03450 3.22180 3.26469 3.44333 3.59095 3.66507 3.80072 4.05241 4.16109 4.23303 4.25417 4.35748 4.37164 4.43950 4.48991 4.61310 4.63508 4.66764 4.67125 4.72827 4.76664 4.79561 4.84515 5.00617 5.11269 5.12431 5.28878 5.31079 5.58113 5.63573 5.67878 5.71188 5.80414 6.30340 6.39101 6.75414 7.07455 7.12135 7.42835 7.74471 8.33811 9.16078 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.004532 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.055392 B = 6177.002804 C = 7380.047196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.184 3.816 3 C -0.304 4.304 4 C 0.386 3.614 5 O -0.563 6.563 6 C -0.346 4.346 7 C 0.562 3.438 8 O -0.587 6.587 9 N -0.692 5.692 10 C 0.143 3.857 11 C 0.130 3.870 12 H 0.045 0.955 13 C 0.057 3.943 14 O -0.395 6.395 15 C 0.043 3.957 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.246 4.246 19 H 0.054 0.946 20 C -0.013 4.013 21 N -0.914 5.914 22 Si 0.930 3.070 23 H -0.280 1.280 24 H -0.280 1.280 25 H -0.301 1.301 26 C 0.211 3.789 27 N -0.458 5.458 28 C 0.032 3.968 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.410 0.590 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.255 0.745 43 H 0.184 0.816 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 -2.778 -6.079 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.076 3.924 3 C -0.327 4.327 4 C 0.279 3.721 5 O -0.452 6.452 6 C -0.356 4.356 7 C 0.351 3.649 8 O -0.469 6.469 9 N -0.344 5.344 10 C 0.018 3.982 11 C 0.024 3.976 12 H 0.063 0.937 13 C -0.022 4.022 14 O -0.314 6.314 15 C -0.035 4.035 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.377 4.377 19 H 0.071 0.929 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.759 3.241 23 H -0.206 1.206 24 H -0.205 1.205 25 H -0.228 1.228 26 C 0.077 3.923 27 N -0.142 5.142 28 C -0.107 4.107 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.249 0.751 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.063 0.937 38 H 0.124 0.876 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.201 0.799 44 H 0.133 0.867 45 H 0.114 0.886 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.850 -1.964 -6.151 14.381 hybrid contribution -0.333 0.267 1.368 1.433 sum -13.183 -1.697 -4.783 14.127 Atomic orbital electron populations 1.21410 0.83397 1.06821 1.06312 1.20998 0.97349 0.83674 0.90352 1.22157 0.93812 0.99442 1.17303 1.18875 0.90457 0.87395 0.75332 1.90728 1.71701 1.35100 1.47675 1.22370 0.93796 0.96229 1.23237 1.17911 0.87298 0.83340 0.76346 1.90734 1.67292 1.35952 1.52900 1.45841 1.07623 1.07548 1.73400 1.21082 0.80396 0.96064 1.00617 1.21514 0.94245 0.91094 0.90725 0.93745 1.22969 0.93812 0.83140 1.02261 1.87810 1.76323 1.27085 1.40152 1.23255 0.96088 0.98613 0.85532 1.21214 0.90297 0.85963 0.99827 1.44216 1.47961 1.15098 1.25658 1.19099 1.04577 0.92176 1.21811 0.92888 1.25439 0.97902 0.96634 1.01154 1.70061 1.34668 1.07747 1.43335 0.85972 0.79531 0.77759 0.80812 1.20583 1.20464 1.22809 1.22471 0.83423 0.99431 0.86998 1.43146 1.04634 1.09298 1.57088 1.23082 0.98198 0.82222 1.07161 0.86560 0.87409 0.87864 0.81847 0.75114 0.93932 0.90782 0.86579 0.93689 0.87564 0.94234 0.91863 0.96660 0.93538 0.79928 0.86663 0.88623 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.35 71.24 0.67 -0.08 16 2 C 0.18 3.42 6.64 41.20 0.27 3.70 16 3 C -0.30 -8.63 9.57 22.34 0.21 -8.42 16 4 C 0.39 16.26 6.96 25.44 0.18 16.44 16 5 O -0.56 -29.84 16.41 13.55 0.22 -29.62 16 6 C -0.35 -13.72 6.05 -18.63 -0.11 -13.83 16 7 C 0.56 25.88 7.77 86.62 0.67 26.55 16 8 O -0.59 -32.44 15.57 15.05 0.23 -32.21 16 9 N -0.69 -28.22 3.72 -466.51 -1.74 -29.95 16 10 C 0.14 5.64 4.46 86.38 0.39 6.03 16 11 C 0.13 4.99 3.23 44.96 0.15 5.13 16 12 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 13 C 0.06 1.92 6.29 72.08 0.45 2.38 16 14 O -0.40 -14.35 10.74 -148.98 -1.60 -15.95 16 15 C 0.04 1.55 6.99 72.08 0.50 2.05 16 16 C 0.15 6.57 5.37 86.36 0.46 7.03 16 17 N -0.60 -26.78 3.01 -673.74 -2.03 -28.81 16 18 C -0.25 -11.87 6.83 84.03 0.57 -11.29 16 19 H 0.05 2.78 5.96 -2.91 -0.02 2.76 16 20 C -0.01 -0.63 5.05 84.86 0.43 -0.20 16 21 N -0.91 -44.69 11.33 21.65 0.25 -44.45 16 22 Si 0.93 40.33 29.57 68.60 2.03 42.36 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 C 0.21 6.00 9.80 84.25 0.83 6.83 16 27 N -0.46 -8.82 2.97 -532.77 -1.58 -10.40 16 28 C 0.03 0.27 9.97 127.77 1.27 1.55 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.11 0.17 6.01 -2.39 -0.01 0.15 16 31 H 0.10 0.53 7.98 -2.39 -0.02 0.51 16 32 H 0.16 3.97 8.01 -2.91 -0.02 3.95 16 33 H 0.41 15.96 5.27 -92.71 -0.49 15.47 16 34 H 0.04 1.88 7.62 -2.39 -0.02 1.86 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.06 3.02 6.53 -2.39 -0.02 3.01 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.25 12.14 8.31 -92.70 -0.77 11.36 16 43 H 0.18 4.82 6.28 -2.91 -0.02 4.81 16 44 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.10 1.02 7.86 -2.38 -0.02 1.00 16 46 H 0.12 0.34 5.96 -2.39 -0.01 0.32 16 Total: -1.00 -83.78 368.01 3.25 -80.52 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.53 Total: 24.66 kcal Atomic # 6 Polarization: 36.91 SS G_CDS: 6.94 Total: 43.85 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -5.10 Total: -113.62 kcal Atomic # 8 Polarization: -76.63 SS G_CDS: -1.14 Total: -77.78 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -83.78 3.25 -80.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.611 kcal (2) G-P(sol) polarization free energy of solvation -83.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds