Wall clock time and date at job start Tue Mar 31 2020 19:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30011 * 127.33034 * 2 1 4 4 O 1.20662 * 112.30172 * 180.02562 * 3 2 1 5 5 C 1.33489 * 113.15338 * 359.75196 * 4 3 2 6 6 C 1.50699 * 126.82738 * 180.30644 * 5 4 3 7 7 C 1.53001 * 117.50182 * 8.72562 * 6 5 4 8 8 C 1.53003 * 60.00098 * 252.51399 * 7 6 5 9 9 C 1.37362 * 106.34495 * 0.39061 * 5 4 3 10 10 C 1.47393 * 128.56561 * 179.91094 * 9 5 4 11 11 O 1.21611 * 120.00120 * 274.65945 * 10 9 5 12 12 N 1.34774 * 120.00161 * 94.66177 * 10 9 5 13 13 C 1.46496 * 120.00290 * 175.04280 * 12 10 9 14 14 C 1.53002 * 109.47275 * 184.82288 * 13 12 10 15 15 H 1.09004 * 109.71082 * 54.17407 * 14 13 12 16 16 C 1.53296 * 109.68145 * 293.63719 * 14 13 12 17 17 O 1.42962 * 109.22335 * 187.97416 * 16 14 13 18 18 C 1.42955 * 114.16669 * 62.58172 * 17 16 14 19 19 C 1.53296 * 109.22496 * 297.42079 * 18 17 16 20 20 N 1.47146 * 109.68228 * 174.71131 * 14 13 12 21 21 C 1.36936 * 120.98169 * 350.53332 * 20 14 13 22 22 H 1.07998 * 120.00254 * 30.75254 * 21 20 14 23 23 C 1.38820 * 120.00011 * 210.75147 * 21 20 14 24 24 N 1.31624 * 119.99652 * 10.02863 * 23 21 20 25 25 Si 1.86798 * 120.00061 * 190.02192 * 23 21 20 26 26 H 1.48499 * 109.46805 * 94.99836 * 25 23 21 27 27 H 1.48500 * 109.46760 * 214.99804 * 25 23 21 28 28 H 1.48497 * 109.47038 * 335.00070 * 25 23 21 29 29 H 1.09004 * 109.47164 * 274.96889 * 1 2 3 30 30 H 1.08996 * 109.47534 * 34.96984 * 1 2 3 31 31 H 1.09005 * 109.46678 * 154.97258 * 1 2 3 32 32 H 1.09005 * 115.55142 * 154.43541 * 6 5 4 33 33 H 1.09002 * 117.49663 * 0.02562 * 7 6 5 34 34 H 1.09000 * 117.50055 * 145.02208 * 7 6 5 35 35 H 1.09005 * 117.49504 * 252.51329 * 8 7 6 36 36 H 1.08999 * 117.51821 * 107.48164 * 8 7 6 37 37 H 0.97007 * 119.99883 * 355.04449 * 12 10 9 38 38 H 1.08996 * 109.47124 * 64.81731 * 13 12 10 39 39 H 1.08997 * 109.47004 * 304.81977 * 13 12 10 40 40 H 1.09001 * 109.51029 * 68.04881 * 16 14 13 41 41 H 1.08997 * 109.51229 * 307.90429 * 16 14 13 42 42 H 1.09002 * 109.51528 * 177.49479 * 18 17 16 43 43 H 1.09005 * 109.55655 * 57.36865 * 18 17 16 44 44 H 1.09000 * 109.67767 * 292.58085 * 19 18 17 45 45 H 1.08998 * 109.71308 * 172.04123 * 19 18 17 46 46 H 0.96999 * 119.99587 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6006 0.0044 6 6 4.9712 -1.3243 0.0117 7 6 6.2344 -0.4864 0.2198 8 6 5.9222 -1.0702 -1.1596 9 6 2.3992 -1.1696 -0.0005 10 6 2.0402 -2.5991 0.0000 11 8 1.9800 -3.2113 -1.0490 12 7 1.7787 -3.2279 1.1631 13 6 1.3168 -4.6181 1.1565 14 6 0.9807 -5.0505 2.5852 15 1 0.2710 -4.3492 3.0242 16 6 2.2604 -5.0861 3.4284 17 8 1.9688 -5.6663 4.7021 18 6 1.5242 -7.0235 4.6390 19 6 0.2068 -7.0873 3.8576 20 7 0.3974 -6.4014 2.5697 21 6 0.0476 -7.0047 1.3913 22 1 0.5961 -6.7835 0.4877 23 6 -1.0121 -7.9009 1.3581 24 7 -1.8029 -8.0238 2.4031 25 14 -1.3157 -8.9322 -0.1695 26 1 -0.6632 -10.2566 -0.0103 27 1 -2.7767 -9.1195 -0.3579 28 1 -0.7484 -8.2402 -1.3546 29 1 -0.3634 0.0890 1.0238 30 1 -0.3634 0.8421 -0.5890 31 1 -0.3633 -0.9312 -0.4348 32 1 4.9559 -2.3269 0.4392 33 1 6.1093 0.5884 0.3518 34 1 7.0503 -0.9375 0.7844 35 1 6.5329 -1.9055 -1.5024 36 1 5.5917 -0.3798 -1.9356 37 1 1.8964 -2.7598 2.0046 38 1 2.1023 -5.2600 0.7579 39 1 0.4271 -4.7024 0.5326 40 1 2.6331 -4.0712 3.5674 41 1 3.0152 -5.6854 2.9195 42 1 1.3673 -7.4026 5.6488 43 1 2.2762 -7.6307 4.1349 44 1 -0.5807 -6.5910 4.4248 45 1 -0.0667 -8.1277 3.6825 46 1 -2.5436 -8.6497 2.3797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051028108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:36 Heat of formation + Delta-G solvation = 32.275108 kcal Electronic energy + Delta-G solvation = -29551.997110 eV Core-core repulsion = 25446.942930 eV Total energy + Delta-G solvation = -4105.054180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.02729 -39.56518 -38.42080 -37.69953 -35.30154 -34.69657 -34.18265 -32.05885 -31.38024 -30.36879 -28.94004 -27.15932 -26.29563 -24.41653 -23.75106 -23.46587 -22.77112 -21.68911 -20.68013 -19.84873 -19.52165 -18.16902 -17.83756 -16.92770 -16.57797 -16.14194 -15.83488 -15.64568 -15.13012 -14.74888 -14.62520 -14.41746 -13.97648 -13.70745 -13.53194 -13.50877 -13.46763 -13.15268 -12.98296 -12.86747 -12.34437 -12.06565 -11.95604 -11.68784 -11.41917 -11.33004 -11.16804 -10.98276 -10.81207 -10.79496 -10.47117 -10.25253 -10.19628 -10.05032 -9.95713 -9.69221 -9.35377 -9.03841 -8.84367 -8.60846 -6.76961 -5.90227 -3.41178 1.07728 1.76100 2.44638 2.62005 3.29871 3.32304 3.40138 3.40997 3.42919 3.89837 4.01531 4.35476 4.36545 4.46028 4.51677 4.52163 4.80800 5.05679 5.18284 5.20607 5.26833 5.27175 5.32541 5.37873 5.44455 5.47503 5.54960 5.57528 5.63851 5.71197 5.73594 5.87920 5.89845 6.07993 6.13404 6.26666 6.38323 6.48440 6.60855 6.73863 7.04823 7.47151 7.55893 7.67352 7.82087 8.05348 8.23604 8.29097 9.04706 9.65412 10.22836 11.17215 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.003224 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.841346 B = 8682.203674 C = 9320.553442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.048 3.952 6 C -0.093 4.093 7 C -0.162 4.162 8 C -0.155 4.155 9 C -0.239 4.239 10 C 0.596 3.404 11 O -0.521 6.521 12 N -0.714 5.714 13 C 0.128 3.872 14 C 0.131 3.869 15 H 0.040 0.960 16 C 0.052 3.948 17 O -0.394 6.394 18 C 0.035 3.965 19 C 0.145 3.855 20 N -0.587 5.587 21 C -0.263 4.263 22 H 0.073 0.927 23 C 0.011 3.989 24 N -0.901 5.901 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.275 1.275 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.096 0.904 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 13.898 -0.809 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.016 4.016 6 C -0.112 4.112 7 C -0.199 4.199 8 C -0.193 4.193 9 C -0.246 4.246 10 C 0.379 3.621 11 O -0.397 6.397 12 N -0.366 5.366 13 C 0.005 3.995 14 C 0.024 3.976 15 H 0.058 0.942 16 C -0.027 4.027 17 O -0.312 6.312 18 C -0.043 4.043 19 C 0.020 3.980 20 N -0.312 5.312 21 C -0.392 4.392 22 H 0.090 0.910 23 C -0.189 4.189 24 N -0.545 5.545 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.200 1.200 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.114 0.886 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.006 14.723 -1.394 19.049 hybrid contribution -0.490 -1.318 -0.536 1.505 sum 11.516 13.405 -1.930 17.777 Atomic orbital electron populations 1.20264 0.84942 1.04503 1.04008 1.24771 0.98645 0.86423 1.00602 1.73613 0.89008 1.23236 1.20556 1.84487 1.21591 1.22349 1.68221 1.23499 0.95503 0.83470 0.99096 1.20509 0.83964 0.99491 1.07239 1.23108 0.96874 1.00248 0.99663 1.23119 1.00548 1.03874 0.91716 1.21930 0.92415 0.95568 1.14734 1.16791 0.77393 0.83714 0.84216 1.90853 1.51031 1.66331 1.31453 1.46080 1.67349 1.15205 1.07929 1.21612 1.00751 0.78656 0.98433 1.21233 0.94021 0.90094 0.92288 0.94216 1.23036 0.96992 0.97079 0.85584 1.87785 1.87055 1.28114 1.28292 1.23371 0.98363 0.82106 1.00475 1.21446 0.91548 1.00099 0.84941 1.43955 1.73516 1.10272 1.03471 1.19186 1.10123 1.21984 0.87930 0.90985 1.25184 0.95203 1.01069 0.97422 1.69977 1.17213 1.37740 1.29551 0.86239 0.77304 0.80364 0.82753 1.21297 1.21552 1.20021 0.89389 0.89920 0.89478 0.84237 0.87643 0.87307 0.87177 0.88019 0.76777 0.91104 0.89292 0.90608 0.93561 0.90119 0.94043 0.95264 0.88620 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.49 36.01 0.38 -0.46 16 2 C 0.06 0.74 7.59 -79.77 -0.61 0.14 16 3 N -0.36 -4.72 12.01 34.78 0.42 -4.30 16 4 O 0.09 1.15 10.86 18.66 0.20 1.35 16 5 C 0.05 0.56 7.00 -34.63 -0.24 0.32 16 6 C -0.09 -0.85 6.15 -91.77 -0.56 -1.41 16 7 C -0.16 -1.07 10.18 -26.73 -0.27 -1.34 16 8 C -0.16 -1.17 10.23 -26.73 -0.27 -1.44 16 9 C -0.24 -3.23 6.25 -102.90 -0.64 -3.88 16 10 C 0.60 9.31 7.63 -12.54 -0.10 9.22 16 11 O -0.52 -10.24 17.11 5.27 0.09 -10.15 16 12 N -0.71 -10.31 5.39 -61.40 -0.33 -10.64 16 13 C 0.13 2.30 3.87 -4.04 -0.02 2.29 16 14 C 0.13 2.53 3.19 -67.42 -0.22 2.31 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.05 0.88 6.08 37.31 0.23 1.10 16 17 O -0.39 -7.46 10.74 -35.23 -0.38 -7.84 16 18 C 0.03 0.66 6.98 37.31 0.26 0.92 16 19 C 0.15 3.32 5.39 -3.53 -0.02 3.30 16 20 N -0.59 -13.84 3.04 -164.30 -0.50 -14.34 16 21 C -0.26 -6.79 8.56 -15.06 -0.13 -6.92 16 22 H 0.07 1.84 6.36 -52.49 -0.33 1.51 16 23 C 0.01 0.29 5.08 -17.43 -0.09 0.20 16 24 N -0.90 -25.04 11.07 55.49 0.61 -24.42 16 25 Si 0.90 21.17 29.57 -169.99 -5.03 16.15 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.11 0.68 8.02 -51.93 -0.42 0.26 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 4.77 7.68 -40.82 -0.31 4.46 16 38 H 0.07 1.34 7.85 -51.93 -0.41 0.93 16 39 H 0.09 1.86 7.23 -51.93 -0.38 1.49 16 40 H 0.08 1.04 7.40 -51.93 -0.38 0.65 16 41 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.41 6.27 -51.93 -0.33 2.08 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.53 382.59 -8.21 -39.74 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.76 Total: 4.35 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.30 Total: 4.35 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.20 Total: -53.71 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.09 Total: -16.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.53 -8.21 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051028108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.011 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds