Wall clock time and date at job start Tue Mar 31 2020 19:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30011 * 127.33034 * 2 1 4 4 O 1.20662 * 112.30172 * 180.02562 * 3 2 1 5 5 C 1.33489 * 113.15338 * 359.75196 * 4 3 2 6 6 C 1.50699 * 126.82738 * 180.30644 * 5 4 3 7 7 C 1.53001 * 117.50182 * 8.72562 * 6 5 4 8 8 C 1.53003 * 60.00098 * 252.51399 * 7 6 5 9 9 C 1.37362 * 106.34495 * 0.39061 * 5 4 3 10 10 C 1.47393 * 128.56561 * 179.91094 * 9 5 4 11 11 O 1.21611 * 120.00120 * 274.65945 * 10 9 5 12 12 N 1.34774 * 120.00161 * 94.66177 * 10 9 5 13 13 C 1.46496 * 120.00290 * 175.04280 * 12 10 9 14 14 C 1.53002 * 109.47275 * 184.82288 * 13 12 10 15 15 H 1.09004 * 109.71082 * 54.17407 * 14 13 12 16 16 C 1.53296 * 109.68145 * 293.63719 * 14 13 12 17 17 O 1.42962 * 109.22335 * 187.97416 * 16 14 13 18 18 C 1.42955 * 114.16669 * 62.58172 * 17 16 14 19 19 C 1.53296 * 109.22496 * 297.42079 * 18 17 16 20 20 N 1.47146 * 109.68228 * 174.71131 * 14 13 12 21 21 C 1.36936 * 120.98169 * 350.53332 * 20 14 13 22 22 H 1.07998 * 120.00254 * 30.75254 * 21 20 14 23 23 C 1.38820 * 120.00011 * 210.75147 * 21 20 14 24 24 N 1.31624 * 119.99652 * 10.02863 * 23 21 20 25 25 Si 1.86798 * 120.00061 * 190.02192 * 23 21 20 26 26 H 1.48499 * 109.46805 * 94.99836 * 25 23 21 27 27 H 1.48500 * 109.46760 * 214.99804 * 25 23 21 28 28 H 1.48497 * 109.47038 * 335.00070 * 25 23 21 29 29 H 1.09004 * 109.47164 * 274.96889 * 1 2 3 30 30 H 1.08996 * 109.47534 * 34.96984 * 1 2 3 31 31 H 1.09005 * 109.46678 * 154.97258 * 1 2 3 32 32 H 1.09005 * 115.55142 * 154.43541 * 6 5 4 33 33 H 1.09002 * 117.49663 * 0.02562 * 7 6 5 34 34 H 1.09000 * 117.50055 * 145.02208 * 7 6 5 35 35 H 1.09005 * 117.49504 * 252.51329 * 8 7 6 36 36 H 1.08999 * 117.51821 * 107.48164 * 8 7 6 37 37 H 0.97007 * 119.99883 * 355.04449 * 12 10 9 38 38 H 1.08996 * 109.47124 * 64.81731 * 13 12 10 39 39 H 1.08997 * 109.47004 * 304.81977 * 13 12 10 40 40 H 1.09001 * 109.51029 * 68.04881 * 16 14 13 41 41 H 1.08997 * 109.51229 * 307.90429 * 16 14 13 42 42 H 1.09002 * 109.51528 * 177.49479 * 18 17 16 43 43 H 1.09005 * 109.55655 * 57.36865 * 18 17 16 44 44 H 1.09000 * 109.67767 * 292.58085 * 19 18 17 45 45 H 1.08998 * 109.71308 * 172.04123 * 19 18 17 46 46 H 0.96999 * 119.99587 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6006 0.0044 6 6 4.9712 -1.3243 0.0117 7 6 6.2344 -0.4864 0.2198 8 6 5.9222 -1.0702 -1.1596 9 6 2.3992 -1.1696 -0.0005 10 6 2.0402 -2.5991 0.0000 11 8 1.9800 -3.2113 -1.0490 12 7 1.7787 -3.2279 1.1631 13 6 1.3168 -4.6181 1.1565 14 6 0.9807 -5.0505 2.5852 15 1 0.2710 -4.3492 3.0242 16 6 2.2604 -5.0861 3.4284 17 8 1.9688 -5.6663 4.7021 18 6 1.5242 -7.0235 4.6390 19 6 0.2068 -7.0873 3.8576 20 7 0.3974 -6.4014 2.5697 21 6 0.0476 -7.0047 1.3913 22 1 0.5961 -6.7835 0.4877 23 6 -1.0121 -7.9009 1.3581 24 7 -1.8029 -8.0238 2.4031 25 14 -1.3157 -8.9322 -0.1695 26 1 -0.6632 -10.2566 -0.0103 27 1 -2.7767 -9.1195 -0.3579 28 1 -0.7484 -8.2402 -1.3546 29 1 -0.3634 0.0890 1.0238 30 1 -0.3634 0.8421 -0.5890 31 1 -0.3633 -0.9312 -0.4348 32 1 4.9559 -2.3269 0.4392 33 1 6.1093 0.5884 0.3518 34 1 7.0503 -0.9375 0.7844 35 1 6.5329 -1.9055 -1.5024 36 1 5.5917 -0.3798 -1.9356 37 1 1.8964 -2.7598 2.0046 38 1 2.1023 -5.2600 0.7579 39 1 0.4271 -4.7024 0.5326 40 1 2.6331 -4.0712 3.5674 41 1 3.0152 -5.6854 2.9195 42 1 1.3673 -7.4026 5.6488 43 1 2.2762 -7.6307 4.1349 44 1 -0.5807 -6.5910 4.4248 45 1 -0.0667 -8.1277 3.6825 46 1 -2.5436 -8.6497 2.3797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051028108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:35 Heat of formation + Delta-G solvation = 11.629043 kcal Electronic energy + Delta-G solvation = -29552.892391 eV Core-core repulsion = 25446.942930 eV Total energy + Delta-G solvation = -4105.949461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.00673 -40.94453 -39.95063 -38.35204 -36.84519 -35.88383 -35.66469 -33.42032 -32.80122 -31.97141 -29.84732 -28.90114 -27.74767 -25.56816 -25.26821 -24.58674 -23.35722 -23.18287 -21.93929 -21.38969 -20.57908 -19.36076 -18.86302 -18.45729 -17.73108 -17.42002 -17.17015 -16.85782 -16.76372 -16.27182 -16.00283 -15.60472 -15.46518 -15.27987 -14.90390 -14.64950 -14.51764 -14.34307 -14.32771 -14.00437 -13.70307 -13.11175 -13.05540 -12.91149 -12.80914 -12.61096 -12.53437 -12.42730 -12.18178 -12.10768 -12.08005 -11.90642 -11.44942 -11.43716 -11.30187 -11.00974 -10.68203 -10.58409 -10.26282 -10.25215 -8.69142 -7.91236 -5.43942 0.13894 0.75816 1.22749 1.44307 1.46958 1.55073 1.61865 2.09813 2.46707 2.77578 2.97095 3.02578 3.12144 3.25587 3.49307 3.59452 3.70001 3.84176 3.91929 3.96582 4.06294 4.14062 4.23983 4.40714 4.41619 4.48362 4.53781 4.53828 4.61113 4.64553 4.67598 4.76165 4.91854 4.94496 4.95676 5.03443 5.04875 5.05937 5.16961 5.21088 5.32999 5.59524 5.63503 6.26697 6.31614 6.36936 7.00037 7.07247 7.09421 7.72564 8.26551 9.13976 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.003224 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.841346 B = 8682.203674 C = 9320.553442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.055 3.945 3 N -0.370 5.370 4 O 0.096 5.904 5 C 0.069 3.931 6 C -0.119 4.119 7 C -0.139 4.139 8 C -0.155 4.155 9 C -0.268 4.268 10 C 0.607 3.393 11 O -0.565 6.565 12 N -0.697 5.697 13 C 0.148 3.852 14 C 0.131 3.869 15 H 0.034 0.966 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.048 3.952 19 C 0.149 3.851 20 N -0.605 5.605 21 C -0.262 4.262 22 H 0.071 0.929 23 C -0.039 4.039 24 N -0.931 5.931 25 Si 0.960 3.040 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.273 1.273 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.414 0.586 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.050 0.950 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.735 15.184 -0.361 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 N -0.079 5.079 4 O 0.037 5.963 5 C 0.006 3.994 6 C -0.139 4.139 7 C -0.176 4.176 8 C -0.192 4.192 9 C -0.276 4.276 10 C 0.391 3.609 11 O -0.444 6.444 12 N -0.349 5.349 13 C 0.024 3.976 14 C 0.024 3.976 15 H 0.052 0.948 16 C -0.021 4.021 17 O -0.315 6.315 18 C -0.030 4.030 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.391 4.391 22 H 0.089 0.911 23 C -0.236 4.236 24 N -0.576 5.576 25 Si 0.789 3.211 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.198 1.198 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.086 0.914 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.360 16.052 -0.914 21.557 hybrid contribution -1.157 -1.629 -0.687 2.113 sum 13.203 14.423 -1.601 19.619 Atomic orbital electron populations 1.20358 0.83709 1.04521 1.05202 1.25093 0.99555 0.86059 0.99957 1.73603 0.89328 1.23430 1.21514 1.84476 1.21281 1.22464 1.68086 1.23931 0.96032 0.83141 0.96341 1.20720 0.83667 0.99992 1.09472 1.23237 0.95420 1.00195 0.98703 1.23237 0.99744 1.04381 0.91864 1.21686 0.93629 0.94357 1.17901 1.16952 0.76102 0.84335 0.83467 1.90829 1.52986 1.67584 1.33009 1.45807 1.66619 1.13837 1.08651 1.21130 0.99055 0.80377 0.96992 1.21367 0.94951 0.87864 0.93397 0.94805 1.23120 0.95278 0.99320 0.84417 1.87792 1.86742 1.27854 1.29136 1.23213 0.95902 0.82628 1.01275 1.21286 0.93214 0.98104 0.85026 1.44194 1.73687 1.12176 1.03046 1.19403 1.09521 1.21475 0.88732 0.91105 1.25818 0.95482 1.02566 0.99704 1.70116 1.17810 1.38631 1.31088 0.85360 0.76635 0.79094 0.80060 1.20866 1.22080 1.19816 0.87802 0.88529 0.90543 0.83986 0.87300 0.85099 0.85840 0.88487 0.74912 0.91874 0.92674 0.86558 0.93158 0.87496 0.93500 0.97778 0.91354 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.49 71.24 0.75 -0.88 16 2 C 0.06 1.38 7.59 45.16 0.34 1.72 16 3 N -0.37 -9.33 12.01 -44.78 -0.54 -9.87 16 4 O 0.10 2.20 10.86 77.02 0.84 3.03 16 5 C 0.07 1.52 7.00 25.48 0.18 1.70 16 6 C -0.12 -1.92 6.15 -11.54 -0.07 -1.99 16 7 C -0.14 -1.40 10.18 30.60 0.31 -1.09 16 8 C -0.16 -1.97 10.23 30.60 0.31 -1.66 16 9 C -0.27 -7.03 6.25 -18.75 -0.12 -7.14 16 10 C 0.61 18.75 7.63 86.65 0.66 19.41 16 11 O -0.57 -22.52 17.11 -4.07 -0.07 -22.59 16 12 N -0.70 -19.48 5.39 -466.42 -2.51 -21.99 16 13 C 0.15 5.32 3.87 86.38 0.33 5.66 16 14 C 0.13 4.96 3.19 44.97 0.14 5.10 16 15 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 16 C 0.06 1.77 6.08 72.08 0.44 2.21 16 17 O -0.40 -13.99 10.74 -148.98 -1.60 -15.59 16 18 C 0.05 1.73 6.98 72.08 0.50 2.24 16 19 C 0.15 6.91 5.39 86.35 0.47 7.38 16 20 N -0.61 -28.80 3.04 -673.72 -2.04 -30.84 16 21 C -0.26 -13.71 8.56 84.04 0.72 -13.00 16 22 H 0.07 3.68 6.36 -2.91 -0.02 3.66 16 23 C -0.04 -2.14 5.08 84.86 0.43 -1.70 16 24 N -0.93 -53.20 11.07 21.65 0.24 -52.96 16 25 Si 0.96 44.37 29.57 68.60 2.03 46.39 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 29 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.11 1.06 8.02 -2.39 -0.02 1.04 16 34 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.41 9.07 7.68 -92.70 -0.71 8.35 16 38 H 0.06 2.38 7.85 -2.39 -0.02 2.36 16 39 H 0.05 2.38 7.23 -2.39 -0.02 2.36 16 40 H 0.12 2.71 7.40 -2.39 -0.02 2.69 16 41 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 42 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.07 3.53 6.27 -2.39 -0.01 3.52 16 46 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -69.50 382.59 2.04 -67.46 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.30 Total: 19.01 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.40 Total: 17.95 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.86 Total: -115.66 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.83 Total: -35.15 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.50 2.04 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051028108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.092 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds