Wall clock time and date at job start Tue Mar 31 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80349 * 2 1 4 4 O 1.20915 * 111.60633 * 180.25801 * 3 2 1 5 5 C 1.34042 * 111.56747 * 359.74597 * 4 3 2 6 6 C 1.50703 * 126.78024 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44417 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00550 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47324 * 89.99684 * 8 7 5 10 10 O 1.21276 * 120.00074 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99842 * 179.97438 * 9 8 7 12 12 C 1.47131 * 121.05696 * 359.97438 * 11 9 8 13 13 C 1.53225 * 108.72039 * 127.77818 * 12 11 9 14 14 O 1.43110 * 109.34625 * 54.15979 * 13 12 11 15 15 C 1.42499 * 113.97047 * 300.04066 * 14 13 12 16 16 C 1.53439 * 113.78882 * 189.45383 * 15 14 13 17 17 N 1.47674 * 85.97770 * 91.25003 * 16 15 14 18 18 C 1.36930 * 134.45805 * 204.29487 * 17 16 15 19 19 H 1.08005 * 120.00242 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00401 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99548 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00579 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46954 * 60.00398 * 22 20 18 24 24 H 1.48499 * 109.47259 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47352 * 300.00587 * 22 20 18 26 26 C 1.47669 * 91.08748 * 24.28840 * 17 16 15 27 27 C 1.47337 * 121.05573 * 180.02562 * 11 9 8 28 28 H 1.09003 * 109.46614 * 270.15965 * 1 2 3 29 29 H 1.09002 * 109.47306 * 30.15964 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.16849 * 1 2 3 31 31 H 1.08998 * 109.47331 * 270.00396 * 6 5 4 32 32 H 1.09003 * 109.46458 * 30.00014 * 6 5 4 33 33 H 1.09000 * 109.47339 * 149.99685 * 6 5 4 34 34 H 1.09005 * 109.46934 * 329.99755 * 8 7 5 35 35 H 1.08995 * 109.46932 * 210.00138 * 8 7 5 36 36 H 1.08997 * 109.59507 * 247.54540 * 12 11 9 37 37 H 1.08996 * 109.59331 * 8.00906 * 12 11 9 38 38 H 1.09000 * 109.49406 * 174.11939 * 13 12 11 39 39 H 1.09003 * 109.49409 * 294.19239 * 13 12 11 40 40 H 1.09002 * 113.79278 * 205.51650 * 16 15 14 41 41 H 1.09004 * 113.79780 * 336.98411 * 16 15 14 42 42 H 0.96999 * 119.99710 * 180.02562 * 21 20 18 43 43 H 1.08993 * 113.79461 * 221.44549 * 26 17 16 44 44 H 1.09005 * 113.89300 * 89.98885 * 26 17 16 45 45 H 1.09002 * 109.74923 * 108.71453 * 27 11 9 46 46 H 1.09006 * 109.78338 * 348.01638 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0051 5 6 3.6025 -0.6068 -0.0037 6 6 4.9022 -1.3696 -0.0081 7 6 2.3539 -1.1320 0.0025 8 6 1.9591 -2.5864 0.0059 9 6 1.8339 -3.0696 1.4279 10 8 2.0441 -2.3080 2.3479 11 7 1.4873 -4.3480 1.6770 12 6 1.2253 -5.2913 0.5787 13 6 2.0730 -6.5488 0.7977 14 8 1.8181 -7.0704 2.1058 15 6 2.1260 -6.1634 3.1609 16 6 2.0717 -6.7969 4.5573 17 7 3.5078 -7.0846 4.3688 18 6 4.3771 -8.0072 4.8865 19 1 5.4116 -8.0082 4.5761 20 6 3.9288 -8.9415 5.8102 21 7 2.6680 -8.9407 6.1881 22 14 5.1145 -10.2006 6.5159 23 1 6.2184 -9.5005 7.2207 24 1 4.3933 -11.0778 7.4728 25 1 5.6744 -11.0249 5.4148 26 6 3.6308 -5.9785 3.3982 27 6 1.3576 -4.8450 3.0580 28 1 -0.3633 0.0029 1.0277 29 1 -0.3634 0.8886 -0.5163 30 1 -0.3634 -0.8915 -0.5112 31 1 5.2111 -1.5551 -1.0368 32 1 5.6681 -0.7851 0.5015 33 1 4.7673 -2.3203 0.5078 34 1 2.7204 -3.1708 -0.5107 35 1 1.0027 -2.7044 -0.5035 36 1 0.1689 -5.5593 0.5712 37 1 1.4945 -4.8299 -0.3714 38 1 1.8122 -7.2980 0.0503 39 1 3.1293 -6.2958 0.7064 40 1 1.8671 -6.0840 5.3560 41 1 1.4479 -7.6892 4.6115 42 1 2.3549 -9.5932 6.8338 43 1 4.2457 -6.2204 2.5314 44 1 3.8902 -5.0212 3.8503 45 1 0.3062 -5.0119 3.2921 46 1 1.7787 -4.1181 3.7527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053529084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:52 Heat of formation + Delta-G solvation = 50.861798 kcal Electronic energy + Delta-G solvation = -29917.720780 eV Core-core repulsion = 25813.472579 eV Total energy + Delta-G solvation = -4104.248201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.04363 -40.50758 -38.87051 -36.30891 -35.47663 -34.52751 -33.82460 -32.28120 -30.68480 -29.83603 -28.84442 -28.00121 -27.28087 -25.79947 -25.12827 -23.37453 -22.53061 -21.57984 -20.39585 -19.31636 -18.84565 -17.90408 -17.21812 -17.07033 -16.82532 -16.23761 -15.75790 -15.42860 -15.02000 -14.56206 -14.43996 -14.26604 -14.20280 -13.68790 -13.66646 -13.52594 -13.38682 -13.29182 -13.18335 -12.80359 -12.73618 -12.47249 -12.36835 -12.15786 -11.96795 -11.39886 -11.19066 -11.12139 -10.88789 -10.82045 -10.78927 -10.24008 -10.16335 -10.01273 -9.71116 -9.65861 -9.33375 -9.21850 -8.83054 -8.35597 -6.89239 -5.76012 -3.08066 1.30997 2.00361 2.54654 2.86899 3.00016 3.40765 3.44398 3.45933 3.98350 4.00545 4.25091 4.40871 4.44691 4.48507 4.65473 4.78973 4.89248 4.97613 5.03862 5.07172 5.12785 5.14830 5.19559 5.20948 5.28302 5.36287 5.40994 5.49864 5.52868 5.56254 5.66953 5.71732 5.74840 5.79826 5.95937 6.01469 6.26147 6.31260 6.46143 6.55386 6.93486 7.16867 7.31924 7.49012 7.78284 7.98033 8.10447 8.15209 9.04048 9.70789 10.56762 11.41389 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002749 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.988769 B =10181.616480 C =10648.762459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.014 4.014 6 C -0.076 4.076 7 C -0.186 4.186 8 C -0.060 4.060 9 C 0.515 3.485 10 O -0.530 6.530 11 N -0.611 5.611 12 C 0.072 3.928 13 C 0.044 3.956 14 O -0.334 6.334 15 C 0.053 3.947 16 C 0.182 3.818 17 N -0.601 5.601 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.102 3.898 27 C 0.099 3.901 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.255 0.745 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 12.976 -18.174 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.190 4.190 8 C -0.101 4.101 9 C 0.303 3.697 10 O -0.406 6.406 11 N -0.346 5.346 12 C -0.052 4.052 13 C -0.034 4.034 14 O -0.252 6.252 15 C 0.011 3.989 16 C 0.056 3.944 17 N -0.327 5.327 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.024 4.024 27 C -0.024 4.024 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.956 14.238 -17.421 22.844 hybrid contribution 0.618 -1.247 0.387 1.445 sum -3.338 12.990 -17.034 21.681 Atomic orbital electron populations 1.20159 0.86142 1.03383 1.03613 1.23329 0.98776 0.88396 1.02039 1.73803 0.89242 1.23859 1.20702 1.84781 1.21659 1.22390 1.67976 1.24196 0.98098 0.83815 1.01628 1.20370 0.90184 0.98934 1.03853 1.20200 0.91930 0.95882 1.10977 1.19911 1.04264 0.90502 0.95393 1.20419 0.76893 0.81370 0.91067 1.90729 1.49453 1.54101 1.46317 1.48237 1.68778 1.09718 1.07857 1.22484 1.01352 0.91329 0.90010 1.22883 0.98495 0.94923 0.87099 1.88069 1.85786 1.38918 1.12425 1.23787 0.95130 0.88306 0.91681 1.22209 0.87727 0.97668 0.86778 1.45737 1.06652 1.31397 1.48956 1.18920 0.90888 1.05928 1.19224 0.90329 1.24764 0.96533 0.99474 0.99481 1.69785 1.13641 1.37763 1.35584 0.86187 0.79775 0.81061 0.78635 1.21218 1.21516 1.21098 1.23026 0.93660 0.92351 0.93364 1.22316 1.01226 0.96412 0.82441 0.89982 0.90555 0.90286 0.89313 0.89542 0.89059 0.87590 0.87617 0.90277 0.89274 0.88011 0.92812 0.93856 0.89634 0.93523 0.93865 0.94189 0.90836 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.29 16 2 C 0.03 0.41 7.33 -82.10 -0.60 -0.20 16 3 N -0.37 -5.05 12.07 33.42 0.40 -4.65 16 4 O 0.10 1.22 11.20 17.17 0.19 1.41 16 5 C -0.01 -0.15 7.49 -35.30 -0.26 -0.41 16 6 C -0.08 -0.56 10.25 36.01 0.37 -0.20 16 7 C -0.19 -2.06 4.81 -104.42 -0.50 -2.56 16 8 C -0.06 -0.53 4.32 -29.03 -0.13 -0.66 16 9 C 0.52 6.62 7.71 -10.99 -0.08 6.54 16 10 O -0.53 -9.11 15.53 5.56 0.09 -9.02 16 11 N -0.61 -7.71 3.03 -172.40 -0.52 -8.23 16 12 C 0.07 0.67 6.50 -3.58 -0.02 0.65 16 13 C 0.04 0.54 6.88 37.27 0.26 0.79 16 14 O -0.33 -6.09 10.52 -35.23 -0.37 -6.46 16 15 C 0.05 0.99 1.21 -90.28 -0.11 0.88 16 16 C 0.18 4.27 6.90 -3.18 -0.02 4.25 16 17 N -0.60 -15.57 3.70 -180.32 -0.67 -16.23 16 18 C -0.22 -6.29 10.70 -15.06 -0.16 -6.46 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.10 2.13 8.08 -3.17 -0.03 2.10 16 27 C 0.10 1.54 5.78 -3.61 -0.02 1.52 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.11 0.67 7.63 -51.93 -0.40 0.28 16 35 H 0.11 0.67 7.49 -51.93 -0.39 0.28 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.51 6.03 -51.93 -0.31 0.20 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.09 2.25 7.17 -51.93 -0.37 1.87 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 43 H 0.04 0.87 7.28 -51.93 -0.38 0.49 16 44 H 0.04 0.83 7.94 -51.93 -0.41 0.42 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.10 1.73 6.91 -51.93 -0.36 1.37 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -36.33 376.75 -7.36 -43.69 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.73 Total: -2.43 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.04 Total: 5.69 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.15 Total: -55.77 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.09 Total: -14.07 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.33 -7.36 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053529084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.556 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds