Wall clock time and date at job start Tue Mar 31 2020 19:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80349 * 2 1 4 4 O 1.20915 * 111.60633 * 180.25801 * 3 2 1 5 5 C 1.34042 * 111.56747 * 359.74597 * 4 3 2 6 6 C 1.50703 * 126.78024 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44417 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00550 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47324 * 89.99684 * 8 7 5 10 10 O 1.21276 * 120.00074 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99842 * 179.97438 * 9 8 7 12 12 C 1.47131 * 121.05696 * 359.97438 * 11 9 8 13 13 C 1.53225 * 108.72039 * 127.77818 * 12 11 9 14 14 O 1.43110 * 109.34625 * 54.15979 * 13 12 11 15 15 C 1.42499 * 113.97047 * 300.04066 * 14 13 12 16 16 C 1.53439 * 113.78882 * 189.45383 * 15 14 13 17 17 N 1.47674 * 85.97770 * 91.25003 * 16 15 14 18 18 C 1.36930 * 134.45805 * 204.29487 * 17 16 15 19 19 H 1.08005 * 120.00242 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00401 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99548 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00579 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46954 * 60.00398 * 22 20 18 24 24 H 1.48499 * 109.47259 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47352 * 300.00587 * 22 20 18 26 26 C 1.47669 * 91.08748 * 24.28840 * 17 16 15 27 27 C 1.47337 * 121.05573 * 180.02562 * 11 9 8 28 28 H 1.09003 * 109.46614 * 270.15965 * 1 2 3 29 29 H 1.09002 * 109.47306 * 30.15964 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.16849 * 1 2 3 31 31 H 1.08998 * 109.47331 * 270.00396 * 6 5 4 32 32 H 1.09003 * 109.46458 * 30.00014 * 6 5 4 33 33 H 1.09000 * 109.47339 * 149.99685 * 6 5 4 34 34 H 1.09005 * 109.46934 * 329.99755 * 8 7 5 35 35 H 1.08995 * 109.46932 * 210.00138 * 8 7 5 36 36 H 1.08997 * 109.59507 * 247.54540 * 12 11 9 37 37 H 1.08996 * 109.59331 * 8.00906 * 12 11 9 38 38 H 1.09000 * 109.49406 * 174.11939 * 13 12 11 39 39 H 1.09003 * 109.49409 * 294.19239 * 13 12 11 40 40 H 1.09002 * 113.79278 * 205.51650 * 16 15 14 41 41 H 1.09004 * 113.79780 * 336.98411 * 16 15 14 42 42 H 0.96999 * 119.99710 * 180.02562 * 21 20 18 43 43 H 1.08993 * 113.79461 * 221.44549 * 26 17 16 44 44 H 1.09005 * 113.89300 * 89.98885 * 26 17 16 45 45 H 1.09002 * 109.74923 * 108.71453 * 27 11 9 46 46 H 1.09006 * 109.78338 * 348.01638 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0051 5 6 3.6025 -0.6068 -0.0037 6 6 4.9022 -1.3696 -0.0081 7 6 2.3539 -1.1320 0.0025 8 6 1.9591 -2.5864 0.0059 9 6 1.8339 -3.0696 1.4279 10 8 2.0441 -2.3080 2.3479 11 7 1.4873 -4.3480 1.6770 12 6 1.2253 -5.2913 0.5787 13 6 2.0730 -6.5488 0.7977 14 8 1.8181 -7.0704 2.1058 15 6 2.1260 -6.1634 3.1609 16 6 2.0717 -6.7969 4.5573 17 7 3.5078 -7.0846 4.3688 18 6 4.3771 -8.0072 4.8865 19 1 5.4116 -8.0082 4.5761 20 6 3.9288 -8.9415 5.8102 21 7 2.6680 -8.9407 6.1881 22 14 5.1145 -10.2006 6.5159 23 1 6.2184 -9.5005 7.2207 24 1 4.3933 -11.0778 7.4728 25 1 5.6744 -11.0249 5.4148 26 6 3.6308 -5.9785 3.3982 27 6 1.3576 -4.8450 3.0580 28 1 -0.3633 0.0029 1.0277 29 1 -0.3634 0.8886 -0.5163 30 1 -0.3634 -0.8915 -0.5112 31 1 5.2111 -1.5551 -1.0368 32 1 5.6681 -0.7851 0.5015 33 1 4.7673 -2.3203 0.5078 34 1 2.7204 -3.1708 -0.5107 35 1 1.0027 -2.7044 -0.5035 36 1 0.1689 -5.5593 0.5712 37 1 1.4945 -4.8299 -0.3714 38 1 1.8122 -7.2980 0.0503 39 1 3.1293 -6.2958 0.7064 40 1 1.8671 -6.0840 5.3560 41 1 1.4479 -7.6892 4.6115 42 1 2.3549 -9.5932 6.8338 43 1 4.2457 -6.2204 2.5314 44 1 3.8902 -5.0212 3.8503 45 1 0.3062 -5.0119 3.2921 46 1 1.7787 -4.1181 3.7527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053529084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:51 Heat of formation + Delta-G solvation = 25.279052 kcal Electronic energy + Delta-G solvation = -29918.830131 eV Core-core repulsion = 25813.472579 eV Total energy + Delta-G solvation = -4105.357552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.88873 -41.71922 -40.15469 -37.74687 -36.29898 -35.71386 -34.59357 -34.25281 -31.84431 -30.82637 -29.59940 -29.29162 -28.34125 -27.16381 -26.86839 -24.57144 -23.82092 -22.82519 -21.22169 -20.59936 -19.96905 -18.81917 -18.78102 -18.13170 -17.95984 -17.49093 -17.06196 -16.66924 -16.45690 -15.94532 -15.71049 -15.30304 -15.15171 -15.02829 -14.75668 -14.64958 -14.30431 -14.10859 -14.01195 -13.91710 -13.84533 -13.44018 -13.32922 -13.19401 -12.96699 -12.90249 -12.83511 -12.73301 -12.46898 -12.06812 -11.92888 -11.88674 -11.69567 -11.46368 -11.02610 -10.98094 -10.76087 -10.70496 -10.04730 -9.51736 -8.94351 -7.90856 -5.24798 0.50064 1.16440 1.44803 1.48800 1.54917 1.60835 1.94455 2.22721 2.46211 2.73461 3.24117 3.24842 3.33893 3.50315 3.54732 3.63356 3.78543 3.85842 3.97050 4.11178 4.19187 4.34760 4.37330 4.42693 4.50437 4.57027 4.58754 4.65644 4.68184 4.69481 4.73129 4.74319 4.77894 4.82776 4.89508 4.93508 5.01975 5.13942 5.15626 5.22183 5.28224 5.35193 5.47170 5.90086 6.37279 6.44544 6.89349 7.14527 7.32006 7.58447 8.51721 9.25923 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002749 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.988769 B =10181.616480 C =10648.762459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 N -0.405 5.405 4 O 0.076 5.924 5 C -0.018 4.018 6 C -0.076 4.076 7 C -0.199 4.199 8 C -0.051 4.051 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.074 3.926 13 C 0.033 3.967 14 O -0.367 6.367 15 C 0.088 3.912 16 C 0.174 3.826 17 N -0.632 5.632 18 C -0.239 4.239 19 H 0.082 0.918 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.981 3.019 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.105 3.895 27 C 0.110 3.890 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.250 0.750 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 12.630 -21.278 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 N -0.115 5.115 4 O 0.015 5.985 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.203 4.203 8 C -0.091 4.091 9 C 0.305 3.695 10 O -0.460 6.460 11 N -0.343 5.343 12 C -0.047 4.047 13 C -0.044 4.044 14 O -0.286 6.286 15 C 0.046 3.954 16 C 0.048 3.952 17 N -0.358 5.358 18 C -0.367 4.367 19 H 0.100 0.900 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.809 3.191 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.201 1.201 26 C -0.020 4.020 27 C -0.015 4.015 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.817 13.903 -20.589 25.135 hybrid contribution 0.601 -1.122 1.296 1.817 sum -3.216 12.781 -19.293 23.365 Atomic orbital electron populations 1.20297 0.84322 1.05189 1.03546 1.23945 1.00178 0.88527 1.00890 1.73790 0.89816 1.25235 1.22663 1.84732 1.21558 1.23597 1.68574 1.24896 0.99644 0.83297 1.00349 1.20541 0.88689 0.98249 1.05783 1.20532 0.91699 0.96888 1.11220 1.20048 1.07302 0.89129 0.92611 1.21153 0.75330 0.80662 0.92350 1.90723 1.51579 1.55440 1.48302 1.48286 1.68514 1.10421 1.07115 1.22742 1.01769 0.89527 0.90682 1.23314 0.99292 0.97254 0.84524 1.88008 1.85927 1.40051 1.14608 1.23072 0.93705 0.88998 0.89656 1.22107 0.86385 0.96469 0.90276 1.46115 1.07414 1.32461 1.49826 1.19336 0.91580 1.06592 1.19162 0.90014 1.25642 0.98234 1.01679 1.00228 1.69991 1.15388 1.38501 1.36160 0.85122 0.77679 0.78472 0.77848 1.20418 1.21843 1.20053 1.23122 0.95741 0.90728 0.92402 1.21898 1.00899 0.94046 0.84617 0.90814 0.89917 0.87410 0.86301 0.89292 0.89114 0.84118 0.84027 0.88762 0.84281 0.85059 0.92879 0.94724 0.93182 0.94136 0.92792 0.94138 0.89899 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.02 0.53 7.33 43.58 0.32 0.85 16 3 N -0.40 -11.01 12.07 -49.57 -0.60 -11.61 16 4 O 0.08 1.92 11.20 71.63 0.80 2.72 16 5 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.08 -0.94 10.25 71.24 0.73 -0.21 16 7 C -0.20 -3.91 4.81 -19.74 -0.10 -4.01 16 8 C -0.05 -0.66 4.32 29.10 0.13 -0.54 16 9 C 0.52 11.73 7.71 87.66 0.68 12.40 16 10 O -0.58 -19.44 15.53 -3.02 -0.05 -19.49 16 11 N -0.61 -13.47 3.03 -817.76 -2.47 -15.95 16 12 C 0.07 1.02 6.50 86.33 0.56 1.58 16 13 C 0.03 0.67 6.88 72.06 0.50 1.17 16 14 O -0.37 -12.89 10.52 -148.98 -1.57 -14.46 16 15 C 0.09 3.27 1.21 -10.48 -0.01 3.26 16 16 C 0.17 8.49 6.90 86.30 0.60 9.08 16 17 N -0.63 -33.50 3.70 -729.29 -2.70 -36.20 16 18 C -0.24 -13.77 10.70 84.04 0.90 -12.87 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 21 N -0.95 -58.37 11.39 21.65 0.25 -58.12 16 22 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.11 4.38 8.08 86.30 0.70 5.08 16 27 C 0.11 3.33 5.78 86.20 0.50 3.83 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.00 7.65 -2.39 -0.02 0.98 16 31 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.16 8.05 -2.39 -0.02 1.15 16 34 H 0.14 0.89 7.63 -2.38 -0.02 0.87 16 35 H 0.14 0.86 7.49 -2.39 -0.02 0.84 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.14 0.58 6.03 -2.39 -0.01 0.56 16 38 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.11 7.20 -2.39 -0.02 1.10 16 40 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.05 2.78 7.17 -2.38 -0.02 2.76 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.05 2.10 7.28 -2.39 -0.02 2.09 16 44 H 0.04 1.70 7.94 -2.38 -0.02 1.68 16 45 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.08 2.84 6.91 -2.38 -0.02 2.83 16 Total: -1.00 -84.75 376.75 3.57 -81.18 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.00 Total: 7.87 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.89 Total: 15.70 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -5.53 Total: -121.88 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.81 Total: -31.23 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -84.75 3.57 -81.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053529084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.460 kcal (2) G-P(sol) polarization free energy of solvation -84.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds