Wall clock time and date at job start Tue Mar 31 2020 19:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30010 * 127.33790 * 2 1 4 4 O 1.20652 * 112.30338 * 179.79522 * 3 2 1 5 5 C 1.33491 * 113.15787 * 0.50177 * 4 3 2 6 6 C 1.50693 * 126.82992 * 179.70655 * 5 4 3 7 7 C 1.37359 * 106.33999 * 359.70423 * 5 4 3 8 8 C 1.47393 * 128.56737 * 179.97438 * 7 5 4 9 9 O 1.21607 * 120.00137 * 270.03025 * 8 7 5 10 10 N 1.34780 * 120.00227 * 90.02191 * 8 7 5 11 11 C 1.46498 * 120.00403 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47425 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.53098 * 59.29451 * 12 11 10 14 14 C 1.55052 * 110.59181 * 182.10713 * 12 11 10 15 15 C 1.54991 * 102.12692 * 155.12899 * 14 12 11 16 16 C 1.53441 * 103.84661 * 339.13929 * 15 14 12 17 17 C 1.53214 * 115.02016 * 227.71914 * 16 15 14 18 18 N 1.47722 * 85.90322 * 220.50580 * 17 16 15 19 19 C 1.36935 * 134.43575 * 204.16947 * 18 17 16 20 20 H 1.07997 * 119.99949 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00146 * 359.93198 * 19 18 17 22 22 N 1.31626 * 119.99539 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47263 * 90.00140 * 23 21 19 25 25 H 1.48499 * 109.46961 * 209.99976 * 23 21 19 26 26 H 1.48496 * 109.47027 * 330.00043 * 23 21 19 27 27 C 1.47722 * 91.13124 * 24.11792 * 18 17 16 28 28 O 1.43109 * 108.24991 * 358.44997 * 16 15 14 29 29 H 1.09002 * 109.47152 * 269.68191 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68291 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68272 * 1 2 3 32 32 H 1.09004 * 109.47053 * 269.99517 * 6 5 4 33 33 H 1.08995 * 109.48006 * 29.99821 * 6 5 4 34 34 H 1.09002 * 109.47382 * 150.00021 * 6 5 4 35 35 H 0.96997 * 119.99953 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.46916 * 300.00676 * 11 10 8 37 37 H 1.09008 * 109.47159 * 59.99772 * 11 10 8 38 38 H 1.08996 * 110.87221 * 273.28799 * 14 12 11 39 39 H 1.09002 * 110.87503 * 36.76256 * 14 12 11 40 40 H 1.08999 * 110.55190 * 97.72844 * 15 14 12 41 41 H 1.08998 * 110.55568 * 220.40937 * 15 14 12 42 42 H 1.08994 * 113.80831 * 334.75242 * 17 16 15 43 43 H 1.09007 * 113.80161 * 106.26351 * 17 16 15 44 44 H 0.97003 * 119.99439 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.80660 * 221.64005 * 27 18 17 46 46 H 1.08999 * 113.79970 * 90.12709 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0040 5 6 3.6494 -0.6008 -0.0034 6 6 4.9712 -1.3246 -0.0073 7 6 2.3992 -1.1696 -0.0065 8 6 2.0400 -2.5991 -0.0150 9 8 1.8922 -3.1827 -1.0716 10 7 1.8756 -3.2596 1.1483 11 6 1.5192 -4.6805 1.1400 12 6 1.3939 -5.1835 2.5794 13 1 0.6307 -4.6200 3.1162 14 6 1.0688 -6.6993 2.6011 15 6 1.6116 -7.1290 3.9878 16 6 2.6162 -6.0261 4.3467 17 6 3.9756 -6.5255 4.8467 18 7 3.8992 -5.4255 5.8298 19 6 4.8244 -4.7118 6.5437 20 1 4.5019 -3.9326 7.2185 21 6 6.1767 -4.9903 6.4009 22 7 6.5697 -5.9401 5.5788 23 14 7.4388 -4.0172 7.3754 24 1 7.6907 -4.6934 8.6733 25 1 8.7055 -3.9379 6.6045 26 1 6.9234 -2.6467 7.6231 27 6 2.4253 -5.4026 5.7334 28 8 2.6655 -5.0944 3.2616 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8929 -0.5089 32 1 5.2899 -1.4934 -1.0360 33 1 5.7174 -0.7215 0.5098 34 1 4.8624 -2.2825 0.5012 35 1 1.9933 -2.7941 1.9911 36 1 0.5678 -4.8134 0.6249 37 1 2.2943 -5.2465 0.6231 38 1 -0.0063 -6.8669 2.5361 39 1 1.5904 -7.2200 1.7980 40 1 0.8051 -7.1650 4.7201 41 1 2.1098 -8.0962 3.9209 42 1 3.9420 -7.5187 5.2944 43 1 4.7805 -6.4113 4.1205 44 1 7.5147 -6.1349 5.4792 45 1 2.0014 -4.3987 5.7099 46 1 1.9276 -6.0598 6.4465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053572555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:14 Heat of formation + Delta-G solvation = 36.081827 kcal Electronic energy + Delta-G solvation = -29360.949303 eV Core-core repulsion = 25256.060195 eV Total energy + Delta-G solvation = -4104.889109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.99875 -40.09180 -39.39433 -36.49448 -34.73054 -34.48732 -33.69824 -32.12048 -31.86643 -29.62119 -28.96235 -28.12322 -26.94784 -25.03573 -24.81890 -23.44975 -21.59919 -21.27035 -20.82840 -20.02948 -19.06866 -18.08392 -17.89440 -16.81589 -16.55129 -16.44017 -16.03647 -15.14368 -15.03392 -14.54445 -14.42557 -14.13807 -13.90963 -13.71344 -13.50462 -13.46900 -13.31732 -13.25943 -13.07470 -12.88115 -12.62092 -12.46802 -12.32662 -11.69906 -11.45051 -11.30812 -11.25451 -11.15772 -11.04782 -10.83348 -10.47391 -10.30538 -10.10739 -10.05554 -9.69572 -9.57338 -9.51671 -9.19989 -8.94490 -8.80389 -6.88129 -5.75776 -3.07408 1.17168 1.74600 2.29021 2.66320 3.16997 3.39088 3.44065 3.46073 3.89200 3.99624 4.08252 4.44611 4.63807 4.67800 4.79107 4.80754 4.97070 5.02897 5.09089 5.18561 5.20142 5.24422 5.27074 5.34791 5.36336 5.48343 5.49567 5.50678 5.58268 5.63930 5.76783 5.81216 5.87818 5.94663 6.10014 6.22279 6.27278 6.31426 6.52842 6.63794 6.89340 7.20017 7.34655 7.48732 7.68687 7.98995 8.02113 8.06593 9.04907 9.71545 10.59108 11.41558 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.003576 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.945072 B = 7827.668124 C = 9750.812935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.030 3.970 6 C -0.083 4.083 7 C -0.257 4.257 8 C 0.602 3.398 9 O -0.531 6.531 10 N -0.708 5.708 11 C 0.129 3.871 12 C 0.057 3.943 13 H 0.072 0.928 14 C -0.143 4.143 15 C -0.139 4.139 16 C 0.058 3.942 17 C 0.172 3.828 18 N -0.604 5.604 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.105 3.895 28 O -0.329 6.329 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.253 0.747 45 H 0.046 0.954 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 4.433 -10.930 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 N -0.065 5.065 4 O 0.034 5.966 5 C -0.034 4.034 6 C -0.140 4.140 7 C -0.265 4.265 8 C 0.386 3.614 9 O -0.408 6.408 10 N -0.359 5.359 11 C 0.006 3.994 12 C -0.001 4.001 13 H 0.090 0.910 14 C -0.182 4.182 15 C -0.178 4.178 16 C 0.018 3.982 17 C 0.047 3.953 18 N -0.330 5.330 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.022 4.022 28 O -0.248 6.248 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.493 5.552 -11.631 17.950 hybrid contribution 0.534 -0.247 1.184 1.322 sum -11.959 5.306 -10.447 16.742 Atomic orbital electron populations 1.20221 0.85227 1.04189 1.03811 1.24716 0.98502 0.86551 1.01070 1.73598 0.89184 1.23408 1.20277 1.84531 1.21424 1.22686 1.67951 1.24709 0.97544 0.83571 0.97534 1.20545 0.88929 0.99776 1.04786 1.21856 0.92936 0.95212 1.16464 1.16818 0.76770 0.83866 0.83955 1.90814 1.50631 1.68401 1.30965 1.45888 1.69972 1.11384 1.08647 1.21505 1.01636 0.80522 0.95746 1.23389 0.88508 0.96211 0.92040 0.90997 1.23077 1.01498 0.94864 0.98718 1.22784 0.98966 1.00084 0.95964 1.23812 0.98699 0.88343 0.87393 1.22347 0.91736 0.90637 0.90581 1.45806 0.99183 1.38265 1.49789 1.18973 0.85919 1.11801 1.18103 0.90372 1.24745 0.96662 0.98935 0.99948 1.69812 1.14648 1.32974 1.39363 0.86147 0.81201 0.79362 0.79221 1.21667 1.21594 1.20662 1.23015 0.88125 0.98208 0.92839 1.88933 1.31905 1.60998 1.42960 0.89573 0.89816 0.89958 0.88583 0.88775 0.88246 0.75478 0.90097 0.90242 0.90474 0.90244 0.90802 0.90185 0.94355 0.90182 0.93677 0.93625 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.49 36.01 0.38 -0.30 16 2 C 0.05 0.66 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.79 12.01 34.78 0.42 -4.38 16 4 O 0.09 1.22 11.06 18.66 0.21 1.42 16 5 C 0.03 0.36 7.55 -34.63 -0.26 0.10 16 6 C -0.08 -0.80 10.33 36.00 0.37 -0.43 16 7 C -0.26 -3.34 6.24 -102.90 -0.64 -3.98 16 8 C 0.60 8.29 7.60 -12.53 -0.10 8.19 16 9 O -0.53 -8.84 17.11 5.27 0.09 -8.75 16 10 N -0.71 -8.78 5.51 -61.39 -0.34 -9.12 16 11 C 0.13 1.52 5.42 -4.04 -0.02 1.50 16 12 C 0.06 0.71 3.39 -25.65 -0.09 0.62 16 13 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.14 -1.56 6.60 -24.60 -0.16 -1.73 16 15 C -0.14 -1.85 6.47 -25.45 -0.16 -2.02 16 16 C 0.06 1.06 1.54 -90.28 -0.14 0.92 16 17 C 0.17 3.98 6.90 -3.27 -0.02 3.96 16 18 N -0.60 -15.40 3.70 -181.54 -0.67 -16.07 16 19 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.15 11.39 55.49 0.63 -26.52 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.10 2.09 8.34 -3.26 -0.03 2.06 16 28 O -0.33 -5.84 10.95 -35.23 -0.39 -6.22 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.41 4.96 8.45 -40.82 -0.35 4.61 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.84 8.05 -51.93 -0.42 0.43 16 40 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 41 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 42 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.08 2.11 7.18 -51.93 -0.37 1.73 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -34.52 388.63 -7.95 -42.47 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.99 Total: 1.91 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.74 Total: 2.33 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.04 Total: -56.09 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.09 Total: -13.55 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.52 -7.95 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053572555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.549 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds