Wall clock time and date at job start Tue Mar 31 2020 18:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35312 * 126.66353 * 2 1 4 4 C 1.42271 * 103.91932 * 179.97438 * 3 2 1 5 5 C 1.48331 * 126.93969 * 179.97438 * 4 3 2 6 6 O 1.21493 * 119.99869 * 6.34490 * 5 4 3 7 7 N 1.34776 * 120.00236 * 186.34381 * 5 4 3 8 8 C 1.47166 * 121.07523 * 175.88943 * 7 5 4 9 9 C 1.53279 * 108.56326 * 231.25063 * 8 7 5 10 10 H 1.08996 * 109.51036 * 66.93369 * 9 8 7 11 11 C 1.52993 * 109.51093 * 187.03707 * 9 8 7 12 12 O 1.43132 * 109.22509 * 307.01094 * 9 8 7 13 13 C 1.41891 * 114.36126 * 60.90690 * 12 9 8 14 14 C 1.54370 * 110.72378 * 63.26347 * 13 12 9 15 15 C 1.54462 * 102.86502 * 83.69555 * 14 13 12 16 16 N 1.47085 * 107.30023 * 21.49926 * 15 14 13 17 17 C 1.36939 * 125.63179 * 180.97722 * 16 15 14 18 18 H 1.07995 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99907 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47251 * 270.00336 * 21 19 17 23 23 H 1.48497 * 109.47009 * 30.00575 * 21 19 17 24 24 H 1.48502 * 109.47180 * 150.00566 * 21 19 17 25 25 C 1.47582 * 108.74180 * 1.24302 * 16 15 14 26 26 C 1.47333 * 121.07465 * 355.91736 * 7 5 4 27 27 N 1.30983 * 106.12543 * 0.26409 * 4 3 2 28 28 O 1.20910 * 111.43840 * 359.53295 * 27 4 3 29 29 H 1.08998 * 109.46824 * 90.00188 * 1 2 3 30 30 H 1.08995 * 109.47033 * 209.99819 * 1 2 3 31 31 H 1.09002 * 109.46884 * 330.00283 * 1 2 3 32 32 H 1.08002 * 128.04513 * 359.95749 * 3 2 1 33 33 H 1.09001 * 109.62656 * 350.97694 * 8 7 5 34 34 H 1.09010 * 109.62219 * 111.34376 * 8 7 5 35 35 H 1.08997 * 109.47606 * 60.00127 * 11 9 8 36 36 H 1.09007 * 109.46922 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.47582 * 299.99904 * 11 9 8 38 38 H 1.09003 * 110.73815 * 325.35225 * 14 13 12 39 39 H 1.08998 * 110.73685 * 202.03639 * 14 13 12 40 40 H 1.09004 * 109.88062 * 262.07411 * 15 14 13 41 41 H 1.09001 * 109.88161 * 140.92966 * 15 14 13 42 42 H 0.97002 * 120.00354 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.37650 * 95.25977 * 25 16 15 44 44 H 1.08997 * 110.37429 * 217.60899 * 25 16 15 45 45 H 1.09000 * 109.67805 * 11.04925 * 26 7 5 46 46 H 1.09007 * 109.70929 * 250.52893 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9076 1.2841 0.0003 6 8 4.9041 2.4935 0.1158 7 7 6.0749 0.6228 -0.1280 8 6 7.3523 1.3476 -0.2212 9 6 8.1166 0.8337 -1.4464 10 1 7.5833 1.1174 -2.3536 11 6 9.5196 1.4437 -1.4663 12 8 8.2154 -0.5925 -1.3762 13 6 6.9665 -1.2661 -1.3714 14 6 6.2059 -1.0160 -2.6912 15 6 6.8099 -2.0731 -3.6418 16 7 7.3964 -3.1303 -2.8042 17 6 8.0487 -4.2430 -3.2645 18 1 8.4451 -4.9644 -2.5654 19 6 8.2002 -4.4436 -4.6296 20 7 7.7175 -3.5642 -5.4816 21 14 9.0905 -5.9610 -5.2575 22 1 10.5394 -5.6647 -5.3918 23 1 8.9006 -7.0786 -4.2984 24 1 8.5393 -6.3459 -6.5816 25 6 7.1605 -2.7974 -1.3860 26 6 6.1134 -0.8491 -0.1800 27 7 3.4761 -0.7657 -0.0049 28 8 2.3073 -1.0750 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0302 2.1272 -0.0006 33 1 7.1604 2.4150 -0.3307 34 1 7.9396 1.1719 0.6802 35 1 10.0530 1.1580 -0.5597 36 1 10.0627 1.0774 -2.3376 37 1 9.4429 2.5298 -1.5158 38 1 6.3974 -0.0091 -3.0622 39 1 5.1370 -1.1826 -2.5581 40 1 7.5839 -1.6172 -4.2593 41 1 6.0277 -2.4926 -4.2745 42 1 7.8231 -3.7045 -6.4356 43 1 6.2640 -3.2996 -1.0223 44 1 8.0240 -3.0758 -0.7820 45 1 5.1023 -1.2387 -0.2982 46 1 6.5513 -1.2381 0.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071128053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:12 Heat of formation + Delta-G solvation = 38.164469 kcal Electronic energy + Delta-G solvation = -30696.714249 eV Core-core repulsion = 26591.915450 eV Total energy + Delta-G solvation = -4104.798799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.27462 -40.59903 -38.81321 -36.26123 -34.98191 -34.34348 -33.52034 -32.93887 -31.34188 -29.30906 -28.49874 -28.16246 -27.19375 -25.66903 -24.22331 -23.64259 -22.69273 -21.69733 -20.20627 -19.65602 -19.05114 -18.03101 -17.63675 -17.07811 -16.97990 -16.45894 -15.90671 -15.33267 -14.87038 -14.66885 -14.31203 -14.14273 -13.95518 -13.90656 -13.63452 -13.58040 -13.35163 -13.14100 -12.81538 -12.51943 -12.26545 -12.15360 -11.96996 -11.88704 -11.58608 -11.25069 -10.94305 -10.86754 -10.83049 -10.65041 -10.53286 -10.23750 -10.12982 -10.07573 -9.90665 -9.67134 -9.65710 -9.51782 -8.55176 -8.43179 -6.79045 -5.66255 -2.99399 0.92644 1.45018 2.53220 2.77897 3.00417 3.43812 3.48331 3.50326 3.68212 3.90695 4.16180 4.52145 4.66036 4.69611 4.80623 4.89714 5.02221 5.04241 5.07524 5.12804 5.23292 5.24636 5.41365 5.46690 5.50424 5.55793 5.63898 5.68415 5.69059 5.80413 5.82982 5.97712 6.05030 6.15411 6.20979 6.35255 6.45602 6.49184 6.56218 6.65952 7.12894 7.58170 7.65233 7.68464 7.74837 7.86543 7.96719 8.28977 9.25885 9.85960 10.51740 11.45743 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003933 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.882677 B = 7117.607345 C = 8787.011504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.186 4.186 4 C -0.018 4.018 5 C 0.600 3.400 6 O -0.531 6.531 7 N -0.593 5.593 8 C 0.085 3.915 9 C 0.070 3.930 10 H 0.065 0.935 11 C -0.140 4.140 12 O -0.344 6.344 13 C 0.095 3.905 14 C -0.166 4.166 15 C 0.187 3.813 16 N -0.599 5.599 17 C -0.224 4.224 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.154 3.846 26 C 0.064 3.936 27 N -0.323 5.323 28 O 0.118 5.882 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.134 0.866 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 11.197 12.574 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.209 4.209 4 C -0.177 4.177 5 C 0.386 3.614 6 O -0.406 6.406 7 N -0.325 5.325 8 C -0.038 4.038 9 C 0.011 3.989 10 H 0.083 0.917 11 C -0.197 4.197 12 O -0.262 6.262 13 C 0.053 3.947 14 C -0.204 4.204 15 C 0.063 3.937 16 N -0.325 5.325 17 C -0.352 4.352 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.218 1.218 25 C 0.027 3.973 26 C -0.059 4.059 27 N -0.026 5.026 28 O 0.046 5.954 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.150 0.850 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.578 10.655 12.425 19.488 hybrid contribution -0.029 0.116 -0.461 0.477 sum -10.607 10.771 11.964 19.278 Atomic orbital electron populations 1.20390 0.83410 1.04873 1.04509 1.24507 0.96553 0.85439 1.02726 1.22383 0.89565 1.01494 1.07434 1.23430 0.96563 0.90144 1.07526 1.16939 0.81407 0.86022 0.77015 1.90765 1.86372 1.12793 1.50720 1.48040 1.05799 1.08113 1.70586 1.22481 0.83392 0.98114 0.99770 1.22461 0.97155 0.83021 0.96272 0.91680 1.21674 0.94621 0.99759 1.03669 1.87914 1.27920 1.16316 1.94081 1.22407 0.84002 0.95291 0.92980 1.23358 0.99053 1.00883 0.97114 1.21082 0.96219 0.86092 0.90337 1.44414 1.65890 1.23543 0.98648 1.19053 1.28256 0.97093 0.90827 0.90352 1.24782 1.01148 0.98716 0.95800 1.69968 1.50355 1.35500 1.01242 0.86108 0.79263 0.82226 0.78106 1.21653 1.20686 1.21752 1.21375 0.98855 0.87786 0.89289 1.23123 1.05071 0.78105 0.99619 1.73975 0.96767 1.15257 1.16633 1.84833 1.11320 1.33653 1.65633 0.89032 0.89491 0.88814 0.80274 0.88274 0.90334 0.91723 0.90972 0.91182 0.92080 0.92113 0.93453 0.93994 0.93851 0.94452 0.93088 0.84955 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 36.01 0.38 0.05 16 2 C -0.03 -0.26 7.47 -35.35 -0.26 -0.53 16 3 C -0.19 -2.01 10.93 -39.08 -0.43 -2.43 16 4 C -0.02 -0.26 6.95 -82.53 -0.57 -0.83 16 5 C 0.60 9.43 7.74 -12.11 -0.09 9.34 16 6 O -0.53 -9.13 16.45 5.37 0.09 -9.04 16 7 N -0.59 -9.13 2.95 -173.62 -0.51 -9.64 16 8 C 0.08 1.18 5.89 -3.53 -0.02 1.16 16 9 C 0.07 1.07 3.19 -26.59 -0.08 0.98 16 10 H 0.07 1.07 6.22 -51.93 -0.32 0.75 16 11 C -0.14 -1.75 9.57 37.15 0.36 -1.40 16 12 O -0.34 -6.59 9.94 -35.22 -0.35 -6.94 16 13 C 0.09 1.79 0.84 -89.52 -0.08 1.72 16 14 C -0.17 -3.36 5.86 -25.25 -0.15 -3.51 16 15 C 0.19 4.76 5.38 -2.96 -0.02 4.75 16 16 N -0.60 -15.78 3.40 -170.16 -0.58 -16.36 16 17 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.68 10.31 55.49 0.57 -27.11 16 21 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.15 3.31 6.43 -2.74 -0.02 3.29 16 26 C 0.06 1.02 5.15 -3.91 -0.02 1.00 16 27 N -0.32 -4.51 8.54 33.29 0.28 -4.23 16 28 O 0.12 1.39 11.18 17.25 0.19 1.58 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.10 1.32 7.11 -51.93 -0.37 0.95 16 34 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.20 6.07 -51.93 -0.32 0.88 16 39 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 40 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 41 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.13 2.13 3.73 -65.85 -0.25 1.89 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -34.28 366.58 -7.68 -41.97 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.62 Total: 0.06 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.26 Total: 6.72 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.23 Total: -57.34 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.07 Total: -14.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.28 -7.68 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071128053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.132 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds