Wall clock time and date at job start Tue Mar 31 2020 18:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35312 * 126.66353 * 2 1 4 4 C 1.42271 * 103.91932 * 179.97438 * 3 2 1 5 5 C 1.48331 * 126.93969 * 179.97438 * 4 3 2 6 6 O 1.21493 * 119.99869 * 6.34490 * 5 4 3 7 7 N 1.34776 * 120.00236 * 186.34381 * 5 4 3 8 8 C 1.47166 * 121.07523 * 175.88943 * 7 5 4 9 9 C 1.53279 * 108.56326 * 231.25063 * 8 7 5 10 10 H 1.08996 * 109.51036 * 66.93369 * 9 8 7 11 11 C 1.52993 * 109.51093 * 187.03707 * 9 8 7 12 12 O 1.43132 * 109.22509 * 307.01094 * 9 8 7 13 13 C 1.41891 * 114.36126 * 60.90690 * 12 9 8 14 14 C 1.54370 * 110.72378 * 63.26347 * 13 12 9 15 15 C 1.54462 * 102.86502 * 83.69555 * 14 13 12 16 16 N 1.47085 * 107.30023 * 21.49926 * 15 14 13 17 17 C 1.36939 * 125.63179 * 180.97722 * 16 15 14 18 18 H 1.07995 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99907 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47251 * 270.00336 * 21 19 17 23 23 H 1.48497 * 109.47009 * 30.00575 * 21 19 17 24 24 H 1.48502 * 109.47180 * 150.00566 * 21 19 17 25 25 C 1.47582 * 108.74180 * 1.24302 * 16 15 14 26 26 C 1.47333 * 121.07465 * 355.91736 * 7 5 4 27 27 N 1.30983 * 106.12543 * 0.26409 * 4 3 2 28 28 O 1.20910 * 111.43840 * 359.53295 * 27 4 3 29 29 H 1.08998 * 109.46824 * 90.00188 * 1 2 3 30 30 H 1.08995 * 109.47033 * 209.99819 * 1 2 3 31 31 H 1.09002 * 109.46884 * 330.00283 * 1 2 3 32 32 H 1.08002 * 128.04513 * 359.95749 * 3 2 1 33 33 H 1.09001 * 109.62656 * 350.97694 * 8 7 5 34 34 H 1.09010 * 109.62219 * 111.34376 * 8 7 5 35 35 H 1.08997 * 109.47606 * 60.00127 * 11 9 8 36 36 H 1.09007 * 109.46922 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.47582 * 299.99904 * 11 9 8 38 38 H 1.09003 * 110.73815 * 325.35225 * 14 13 12 39 39 H 1.08998 * 110.73685 * 202.03639 * 14 13 12 40 40 H 1.09004 * 109.88062 * 262.07411 * 15 14 13 41 41 H 1.09001 * 109.88161 * 140.92966 * 15 14 13 42 42 H 0.97002 * 120.00354 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.37650 * 95.25977 * 25 16 15 44 44 H 1.08997 * 110.37429 * 217.60899 * 25 16 15 45 45 H 1.09000 * 109.67805 * 11.04925 * 26 7 5 46 46 H 1.09007 * 109.70929 * 250.52893 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9076 1.2841 0.0003 6 8 4.9041 2.4935 0.1158 7 7 6.0749 0.6228 -0.1280 8 6 7.3523 1.3476 -0.2212 9 6 8.1166 0.8337 -1.4464 10 1 7.5833 1.1174 -2.3536 11 6 9.5196 1.4437 -1.4663 12 8 8.2154 -0.5925 -1.3762 13 6 6.9665 -1.2661 -1.3714 14 6 6.2059 -1.0160 -2.6912 15 6 6.8099 -2.0731 -3.6418 16 7 7.3964 -3.1303 -2.8042 17 6 8.0487 -4.2430 -3.2645 18 1 8.4451 -4.9644 -2.5654 19 6 8.2002 -4.4436 -4.6296 20 7 7.7175 -3.5642 -5.4816 21 14 9.0905 -5.9610 -5.2575 22 1 10.5394 -5.6647 -5.3918 23 1 8.9006 -7.0786 -4.2984 24 1 8.5393 -6.3459 -6.5816 25 6 7.1605 -2.7974 -1.3860 26 6 6.1134 -0.8491 -0.1800 27 7 3.4761 -0.7657 -0.0049 28 8 2.3073 -1.0750 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0302 2.1272 -0.0006 33 1 7.1604 2.4150 -0.3307 34 1 7.9396 1.1719 0.6802 35 1 10.0530 1.1580 -0.5597 36 1 10.0627 1.0774 -2.3376 37 1 9.4429 2.5298 -1.5158 38 1 6.3974 -0.0091 -3.0622 39 1 5.1370 -1.1826 -2.5581 40 1 7.5839 -1.6172 -4.2593 41 1 6.0277 -2.4926 -4.2745 42 1 7.8231 -3.7045 -6.4356 43 1 6.2640 -3.2996 -1.0223 44 1 8.0240 -3.0758 -0.7820 45 1 5.1023 -1.2387 -0.2982 46 1 6.5513 -1.2381 0.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071128053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:11 Heat of formation + Delta-G solvation = 15.566225 kcal Electronic energy + Delta-G solvation = -30697.694182 eV Core-core repulsion = 26591.915450 eV Total energy + Delta-G solvation = -4105.778732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.18882 -41.93419 -40.18702 -37.95212 -36.23059 -35.22568 -34.79334 -34.24114 -32.98961 -31.15357 -30.08374 -28.78668 -28.28855 -27.42148 -25.71155 -24.99659 -23.64527 -23.08557 -22.06997 -20.94665 -20.32940 -19.02292 -18.95428 -18.65427 -18.16281 -17.70612 -17.20923 -16.82873 -16.58098 -16.13654 -15.69394 -15.65162 -15.21656 -15.10554 -14.74428 -14.46894 -14.40356 -14.08407 -13.97621 -13.93906 -13.75139 -13.45087 -13.21547 -13.06985 -12.90592 -12.83555 -12.78608 -12.42104 -12.20706 -12.12156 -11.99529 -11.89422 -11.78220 -11.72133 -11.59786 -11.20588 -11.01899 -10.72276 -10.41462 -9.73839 -8.93265 -7.85443 -5.21554 -0.04900 0.64680 1.43290 1.45833 1.48358 1.56893 1.88986 2.00864 2.48043 2.53242 2.67434 3.28482 3.33916 3.38904 3.53906 3.71520 3.76630 3.85272 3.90272 3.91737 4.01357 4.13670 4.28342 4.30214 4.36017 4.43929 4.60676 4.63884 4.70380 4.71994 4.78024 4.78691 4.81854 4.87678 4.88733 4.99318 5.02043 5.11477 5.25322 5.26613 5.41205 5.53409 5.67056 5.92404 6.15115 6.29459 6.61537 7.02692 7.07144 7.73478 8.38632 9.25660 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003933 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.882677 B = 7117.607345 C = 8787.011504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.198 4.198 4 C -0.044 4.044 5 C 0.599 3.401 6 O -0.550 6.550 7 N -0.596 5.596 8 C 0.088 3.912 9 C 0.065 3.935 10 H 0.049 0.951 11 C -0.134 4.134 12 O -0.368 6.368 13 C 0.107 3.893 14 C -0.148 4.148 15 C 0.201 3.799 16 N -0.620 5.620 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.982 3.018 22 H -0.287 1.287 23 H -0.265 1.265 24 H -0.294 1.294 25 C 0.149 3.851 26 C 0.075 3.925 27 N -0.347 5.347 28 O 0.115 5.885 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.197 0.803 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.246 0.754 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.137 0.863 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 11.591 14.401 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 C -0.220 4.220 4 C -0.201 4.201 5 C 0.386 3.614 6 O -0.427 6.427 7 N -0.328 5.328 8 C -0.033 4.033 9 C 0.007 3.993 10 H 0.067 0.933 11 C -0.191 4.191 12 O -0.288 6.288 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.076 3.924 16 N -0.346 5.346 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.810 3.190 22 H -0.214 1.214 23 H -0.190 1.190 24 H -0.220 1.220 25 C 0.023 3.977 26 C -0.048 4.048 27 N -0.051 5.051 28 O 0.043 5.957 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.214 0.786 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.153 0.847 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.740 11.053 14.294 21.548 hybrid contribution 0.255 0.021 -1.016 1.048 sum -11.485 11.074 13.279 20.757 Atomic orbital electron populations 1.20696 0.79785 1.06742 1.05901 1.25303 0.98118 0.83935 0.99866 1.22666 0.88446 1.02828 1.08091 1.23469 0.96940 0.90614 1.09044 1.17172 0.81915 0.85933 0.76373 1.90741 1.86751 1.13524 1.51697 1.48096 1.06376 1.07801 1.70553 1.22521 0.82883 0.98314 0.99591 1.22684 0.99032 0.81138 0.96419 0.93298 1.21691 0.92658 1.01358 1.03406 1.87877 1.28097 1.18572 1.94218 1.22182 0.84314 0.93729 0.93250 1.23145 0.99320 0.99242 0.96962 1.20722 0.94010 0.86907 0.90792 1.44686 1.65765 1.23244 1.00870 1.19493 1.28092 0.97955 0.91361 0.89592 1.25679 1.02338 1.01871 0.96068 1.70203 1.51733 1.37360 1.01041 0.85029 0.77681 0.78980 0.77345 1.21445 1.18987 1.22043 1.21564 0.99421 0.89963 0.86746 1.22952 1.04621 0.78722 0.98525 1.73881 0.97984 1.15363 1.17848 1.84787 1.11043 1.34654 1.65260 0.87630 0.88036 0.86505 0.78625 0.87390 0.88580 0.90643 0.92644 0.88179 0.91578 0.91246 0.97513 0.97445 0.94492 0.92894 0.92890 0.84670 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 71.24 0.74 0.37 16 2 C -0.01 -0.14 7.47 25.01 0.19 0.05 16 3 C -0.20 -3.89 10.93 22.60 0.25 -3.65 16 4 C -0.04 -1.18 6.95 42.96 0.30 -0.88 16 5 C 0.60 18.22 7.74 86.93 0.67 18.89 16 6 O -0.55 -18.32 16.45 -3.69 -0.06 -18.38 16 7 N -0.60 -17.63 2.95 -821.51 -2.42 -20.05 16 8 C 0.09 2.33 5.89 86.35 0.51 2.83 16 9 C 0.07 1.97 3.19 30.69 0.10 2.06 16 10 H 0.05 1.62 6.22 -2.39 -0.01 1.61 16 11 C -0.13 -3.19 9.57 71.98 0.69 -2.50 16 12 O -0.37 -14.08 9.94 -148.95 -1.48 -15.56 16 13 C 0.11 4.02 0.84 -10.08 -0.01 4.01 16 14 C -0.15 -6.15 5.86 31.56 0.19 -5.96 16 15 C 0.20 10.70 5.38 86.76 0.47 11.17 16 16 N -0.62 -33.49 3.40 -692.26 -2.35 -35.85 16 17 C -0.24 -13.94 10.28 84.03 0.86 -13.08 16 18 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 20 N -0.95 -59.51 10.31 21.65 0.22 -59.29 16 21 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 C 0.15 6.40 6.43 86.63 0.56 6.96 16 26 C 0.08 2.31 5.15 86.01 0.44 2.76 16 27 N -0.35 -9.34 8.54 -49.51 -0.42 -9.76 16 28 O 0.12 2.53 11.18 71.88 0.80 3.34 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.11 2.68 7.11 -2.39 -0.02 2.66 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.66 6.07 -2.39 -0.01 2.64 16 39 H 0.07 2.74 7.83 -2.39 -0.02 2.73 16 40 H 0.01 0.40 7.38 -2.38 -0.02 0.38 16 41 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 42 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.05 2.13 8.00 -2.39 -0.02 2.11 16 44 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.14 4.23 3.73 -29.88 -0.11 4.12 16 46 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -77.06 366.58 3.63 -73.43 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.90 Total: 13.59 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.42 Total: 19.56 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.97 Total: -124.95 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.74 Total: -30.60 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -77.06 3.63 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071128053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.993 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds