Wall clock time and date at job start Tue Mar 31 2020 18:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35311 * 126.66829 * 2 1 4 4 C 1.42271 * 103.92340 * 180.15093 * 3 2 1 5 5 C 1.48333 * 126.93695 * 179.88908 * 4 3 2 6 6 O 1.21496 * 119.99996 * 353.25604 * 5 4 3 7 7 N 1.34784 * 119.99824 * 173.25738 * 5 4 3 8 8 C 1.47161 * 121.06340 * 173.60421 * 7 5 4 9 9 C 1.53283 * 108.54530 * 128.89185 * 8 7 5 10 10 H 1.08996 * 109.51128 * 292.91443 * 9 8 7 11 11 C 1.53004 * 109.50730 * 172.81765 * 9 8 7 12 12 O 1.43095 * 109.22882 * 52.89661 * 9 8 7 13 13 C 1.42061 * 114.32748 * 298.84753 * 12 9 8 14 14 C 1.54499 * 110.38207 * 182.83578 * 13 12 9 15 15 C 1.55280 * 101.42406 * 83.74725 * 14 13 12 16 16 N 1.47483 * 104.77777 * 36.69072 * 15 14 13 17 17 C 1.36929 * 125.66444 * 155.88303 * 16 15 14 18 18 H 1.08004 * 119.99902 * 179.69101 * 17 16 15 19 19 C 1.38813 * 119.99771 * 359.69995 * 17 16 15 20 20 N 1.31612 * 120.00442 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99640 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46912 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47040 * 299.99677 * 21 19 17 24 24 H 1.48496 * 109.47263 * 59.99708 * 21 19 17 25 25 C 1.47184 * 108.67276 * 335.62587 * 16 15 14 26 26 C 1.47300 * 121.06436 * 353.62657 * 7 5 4 27 27 N 1.30978 * 106.12272 * 359.62499 * 4 3 2 28 28 O 1.20907 * 111.43970 * 0.24345 * 27 4 3 29 29 H 1.09001 * 109.47376 * 180.28497 * 1 2 3 30 30 H 1.09004 * 109.47336 * 300.28791 * 1 2 3 31 31 H 1.09003 * 109.47291 * 60.28533 * 1 2 3 32 32 H 1.08010 * 128.03912 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.62571 * 248.60821 * 8 7 5 34 34 H 1.08997 * 109.62965 * 9.17698 * 8 7 5 35 35 H 1.09001 * 109.47308 * 60.00572 * 11 9 8 36 36 H 1.09003 * 109.47066 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47440 * 299.99947 * 11 9 8 38 38 H 1.08999 * 111.01362 * 201.99856 * 14 13 12 39 39 H 1.09002 * 111.01141 * 325.83482 * 14 13 12 40 40 H 1.09004 * 110.50239 * 277.83149 * 15 14 13 41 41 H 1.08994 * 110.32362 * 155.46503 * 15 14 13 42 42 H 0.97000 * 120.00578 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.90950 * 121.13829 * 25 16 15 44 44 H 1.09004 * 109.90506 * 242.22041 * 25 16 15 45 45 H 1.09000 * 109.67903 * 109.65109 * 26 7 5 46 46 H 1.08994 * 109.68493 * 349.10455 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0853 0.0000 4 6 3.6271 0.5353 -0.0036 5 6 4.9075 1.2841 -0.0075 6 8 4.9041 2.4927 -0.1313 7 7 6.0748 0.6236 0.1264 8 6 7.3627 1.3218 -0.0132 9 6 8.2300 0.9937 1.2073 10 1 7.7858 1.4359 2.0990 11 6 9.6363 1.5604 1.0020 12 8 8.3053 -0.4267 1.3637 13 6 7.0523 -1.0583 1.5858 14 6 7.2464 -2.5742 1.8119 15 6 7.5913 -2.6178 3.3253 16 7 6.7518 -1.5683 3.9327 17 6 6.3516 -1.5240 5.2415 18 1 5.7388 -0.7064 5.5914 19 6 6.7337 -2.5299 6.1185 20 7 7.4801 -3.5265 5.6920 21 14 6.1882 -2.4692 7.9041 22 1 6.7241 -3.6512 8.6258 23 1 6.7018 -1.2276 8.5365 24 1 4.7047 -2.4807 7.9692 25 6 6.4208 -0.5731 2.9001 26 6 6.1022 -0.8203 0.4166 27 7 3.4760 -0.7657 0.0029 28 8 2.3072 -1.0750 0.0049 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 2.0301 2.1272 0.0004 33 1 7.8650 0.9856 -0.9203 34 1 7.1926 2.3973 -0.0629 35 1 9.5778 2.6419 0.8786 36 1 10.2524 1.3271 1.8704 37 1 10.0805 1.1165 0.1111 38 1 6.3280 -3.1217 1.6005 39 1 8.0732 -2.9560 1.2129 40 1 8.6471 -2.3972 3.4828 41 1 7.3405 -3.5928 3.7428 42 1 7.7474 -4.2292 6.3049 43 1 5.3391 -0.5007 2.7875 44 1 6.8311 0.3984 3.1758 45 1 6.4550 -1.3642 -0.4596 46 1 5.1013 -1.1605 0.6819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071128056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:22 Heat of formation + Delta-G solvation = 36.205124 kcal Electronic energy + Delta-G solvation = -30750.329172 eV Core-core repulsion = 26645.445410 eV Total energy + Delta-G solvation = -4104.883762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.22183 -40.59375 -38.79451 -36.25535 -34.95951 -34.29383 -33.49457 -33.02645 -31.34592 -29.37667 -28.30357 -28.06414 -27.17805 -25.80971 -24.15428 -23.70014 -22.65750 -21.66771 -20.32985 -19.60501 -18.92693 -17.99247 -17.53540 -17.11446 -16.85970 -16.53428 -15.96708 -15.32029 -14.89938 -14.71785 -14.33989 -14.01758 -13.92999 -13.84703 -13.64066 -13.57474 -13.36454 -13.06398 -12.75857 -12.57774 -12.26824 -12.19352 -11.99798 -11.65848 -11.54410 -11.31572 -11.01207 -10.91200 -10.85171 -10.60970 -10.51311 -10.45426 -10.16110 -10.12310 -9.80681 -9.60513 -9.59074 -9.54684 -8.64158 -8.42147 -6.83071 -5.64042 -3.06012 0.97989 1.49924 2.58117 2.83297 3.04426 3.40836 3.44777 3.46341 3.72985 3.88997 4.20827 4.47870 4.68858 4.74626 4.85636 4.94311 5.02533 5.07715 5.08462 5.13814 5.25999 5.28532 5.46174 5.47470 5.50238 5.51777 5.61786 5.66677 5.70709 5.74236 5.84893 5.96883 6.06718 6.16890 6.25393 6.34721 6.43599 6.51757 6.59400 6.66498 7.15429 7.56750 7.62292 7.64446 7.77431 7.85988 8.00182 8.36194 9.22559 9.82543 10.47973 11.39553 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004594 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.264795 B = 6092.951989 C = 7999.756400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.031 4.031 3 C -0.186 4.186 4 C -0.020 4.020 5 C 0.602 3.398 6 O -0.529 6.529 7 N -0.596 5.596 8 C 0.085 3.915 9 C 0.068 3.932 10 H 0.069 0.931 11 C -0.139 4.139 12 O -0.353 6.353 13 C 0.095 3.905 14 C -0.129 4.129 15 C 0.157 3.843 16 N -0.599 5.599 17 C -0.224 4.224 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.123 3.877 26 C 0.077 3.923 27 N -0.323 5.323 28 O 0.119 5.881 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.109 0.891 42 H 0.253 0.747 43 H 0.022 0.978 44 H 0.025 0.975 45 H 0.077 0.923 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 7.162 -15.494 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.179 4.179 5 C 0.388 3.612 6 O -0.405 6.405 7 N -0.329 5.329 8 C -0.037 4.037 9 C 0.010 3.990 10 H 0.087 0.913 11 C -0.197 4.197 12 O -0.272 6.272 13 C 0.054 3.946 14 C -0.168 4.168 15 C 0.033 3.967 16 N -0.325 5.325 17 C -0.352 4.352 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.003 4.003 26 C -0.045 4.045 27 N -0.026 5.026 28 O 0.046 5.954 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.042 0.958 45 H 0.095 0.905 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.543 6.595 -15.364 18.343 hybrid contribution -0.731 0.990 0.960 1.561 sum -8.274 7.586 -14.404 18.261 Atomic orbital electron populations 1.20384 0.83426 1.05022 1.04325 1.24491 0.96556 0.85436 1.02886 1.22375 0.89598 1.01533 1.07323 1.23400 0.96554 0.90175 1.07725 1.16930 0.81429 0.85980 0.76878 1.90762 1.86326 1.12618 1.50776 1.48047 1.05299 1.10563 1.68982 1.22461 0.82722 0.99141 0.99355 1.22474 0.96608 0.83468 0.96470 0.91305 1.21678 0.94579 1.00139 1.03264 1.87870 1.28886 1.18248 1.92183 1.22300 0.83655 0.95766 0.92864 1.23046 1.01581 0.90376 1.01818 1.22014 0.93064 0.96295 0.85339 1.44480 1.59202 1.23122 1.05683 1.19003 1.26206 1.06309 0.83689 0.90786 1.24760 1.00027 0.97260 0.98350 1.69768 1.40639 1.12864 1.33632 0.86156 0.78078 0.76955 0.84326 1.21457 1.21241 1.21184 1.21681 0.96382 0.93602 0.88647 1.22981 1.03735 0.79122 0.98695 1.74147 0.96856 1.15377 1.16224 1.84822 1.11295 1.33618 1.65669 0.89534 0.88842 0.88985 0.80272 0.90383 0.88124 0.91095 0.91099 0.91761 0.90491 0.90956 0.96399 0.87344 0.93628 0.96031 0.95772 0.90523 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.44 36.00 0.38 0.00 16 2 C -0.03 -0.30 7.47 -35.35 -0.26 -0.56 16 3 C -0.19 -2.17 10.93 -39.08 -0.43 -2.60 16 4 C -0.02 -0.30 6.88 -82.53 -0.57 -0.87 16 5 C 0.60 9.94 7.73 -12.10 -0.09 9.84 16 6 O -0.53 -9.49 16.43 5.37 0.09 -9.40 16 7 N -0.60 -9.52 2.94 -173.56 -0.51 -10.03 16 8 C 0.09 1.21 5.92 -3.53 -0.02 1.19 16 9 C 0.07 1.06 3.17 -26.58 -0.08 0.98 16 10 H 0.07 1.20 6.23 -51.93 -0.32 0.88 16 11 C -0.14 -1.70 9.57 37.16 0.36 -1.34 16 12 O -0.35 -6.58 9.90 -35.23 -0.35 -6.93 16 13 C 0.09 1.81 0.80 -89.73 -0.07 1.74 16 14 C -0.13 -2.56 6.23 -24.74 -0.15 -2.72 16 15 C 0.16 3.96 5.91 -2.30 -0.01 3.94 16 16 N -0.60 -15.99 3.40 -170.07 -0.58 -16.57 16 17 C -0.22 -6.43 10.28 -15.06 -0.15 -6.59 16 18 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.08 10.09 55.49 0.56 -26.52 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.12 2.80 6.32 -3.32 -0.02 2.78 16 26 C 0.08 1.27 4.82 -3.85 -0.02 1.26 16 27 N -0.32 -4.76 8.70 33.29 0.29 -4.47 16 28 O 0.12 1.49 11.18 17.25 0.19 1.69 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.37 7.06 -51.93 -0.37 1.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.44 8.01 -51.93 -0.42 1.03 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 3.00 5.86 -51.93 -0.30 2.69 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.02 0.51 7.61 -51.93 -0.40 0.11 16 44 H 0.02 0.58 6.02 -51.93 -0.31 0.26 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.12 2.10 4.19 -52.10 -0.22 1.88 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -33.93 366.07 -7.60 -41.53 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.53 Total: 1.10 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.26 Total: 6.72 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.24 Total: -57.59 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.07 Total: -14.65 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.93 -7.60 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071128056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.737 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds