Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35311 * 126.66829 * 2 1 4 4 C 1.42271 * 103.92340 * 180.15093 * 3 2 1 5 5 C 1.48333 * 126.93695 * 179.88908 * 4 3 2 6 6 O 1.21496 * 119.99996 * 353.25604 * 5 4 3 7 7 N 1.34784 * 119.99824 * 173.25738 * 5 4 3 8 8 C 1.47161 * 121.06340 * 173.60421 * 7 5 4 9 9 C 1.53283 * 108.54530 * 128.89185 * 8 7 5 10 10 H 1.08996 * 109.51128 * 292.91443 * 9 8 7 11 11 C 1.53004 * 109.50730 * 172.81765 * 9 8 7 12 12 O 1.43095 * 109.22882 * 52.89661 * 9 8 7 13 13 C 1.42061 * 114.32748 * 298.84753 * 12 9 8 14 14 C 1.54499 * 110.38207 * 182.83578 * 13 12 9 15 15 C 1.55280 * 101.42406 * 83.74725 * 14 13 12 16 16 N 1.47483 * 104.77777 * 36.69072 * 15 14 13 17 17 C 1.36929 * 125.66444 * 155.88303 * 16 15 14 18 18 H 1.08004 * 119.99902 * 179.69101 * 17 16 15 19 19 C 1.38813 * 119.99771 * 359.69995 * 17 16 15 20 20 N 1.31612 * 120.00442 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99640 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46912 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47040 * 299.99677 * 21 19 17 24 24 H 1.48496 * 109.47263 * 59.99708 * 21 19 17 25 25 C 1.47184 * 108.67276 * 335.62587 * 16 15 14 26 26 C 1.47300 * 121.06436 * 353.62657 * 7 5 4 27 27 N 1.30978 * 106.12272 * 359.62499 * 4 3 2 28 28 O 1.20907 * 111.43970 * 0.24345 * 27 4 3 29 29 H 1.09001 * 109.47376 * 180.28497 * 1 2 3 30 30 H 1.09004 * 109.47336 * 300.28791 * 1 2 3 31 31 H 1.09003 * 109.47291 * 60.28533 * 1 2 3 32 32 H 1.08010 * 128.03912 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.62571 * 248.60821 * 8 7 5 34 34 H 1.08997 * 109.62965 * 9.17698 * 8 7 5 35 35 H 1.09001 * 109.47308 * 60.00572 * 11 9 8 36 36 H 1.09003 * 109.47066 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47440 * 299.99947 * 11 9 8 38 38 H 1.08999 * 111.01362 * 201.99856 * 14 13 12 39 39 H 1.09002 * 111.01141 * 325.83482 * 14 13 12 40 40 H 1.09004 * 110.50239 * 277.83149 * 15 14 13 41 41 H 1.08994 * 110.32362 * 155.46503 * 15 14 13 42 42 H 0.97000 * 120.00578 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.90950 * 121.13829 * 25 16 15 44 44 H 1.09004 * 109.90506 * 242.22041 * 25 16 15 45 45 H 1.09000 * 109.67903 * 109.65109 * 26 7 5 46 46 H 1.08994 * 109.68493 * 349.10455 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0853 0.0000 4 6 3.6271 0.5353 -0.0036 5 6 4.9075 1.2841 -0.0075 6 8 4.9041 2.4927 -0.1313 7 7 6.0748 0.6236 0.1264 8 6 7.3627 1.3218 -0.0132 9 6 8.2300 0.9937 1.2073 10 1 7.7858 1.4359 2.0990 11 6 9.6363 1.5604 1.0020 12 8 8.3053 -0.4267 1.3637 13 6 7.0523 -1.0583 1.5858 14 6 7.2464 -2.5742 1.8119 15 6 7.5913 -2.6178 3.3253 16 7 6.7518 -1.5683 3.9327 17 6 6.3516 -1.5240 5.2415 18 1 5.7388 -0.7064 5.5914 19 6 6.7337 -2.5299 6.1185 20 7 7.4801 -3.5265 5.6920 21 14 6.1882 -2.4692 7.9041 22 1 6.7241 -3.6512 8.6258 23 1 6.7018 -1.2276 8.5365 24 1 4.7047 -2.4807 7.9692 25 6 6.4208 -0.5731 2.9001 26 6 6.1022 -0.8203 0.4166 27 7 3.4760 -0.7657 0.0029 28 8 2.3072 -1.0750 0.0049 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 2.0301 2.1272 0.0004 33 1 7.8650 0.9856 -0.9203 34 1 7.1926 2.3973 -0.0629 35 1 9.5778 2.6419 0.8786 36 1 10.2524 1.3271 1.8704 37 1 10.0805 1.1165 0.1111 38 1 6.3280 -3.1217 1.6005 39 1 8.0732 -2.9560 1.2129 40 1 8.6471 -2.3972 3.4828 41 1 7.3405 -3.5928 3.7428 42 1 7.7474 -4.2292 6.3049 43 1 5.3391 -0.5007 2.7875 44 1 6.8311 0.3984 3.1758 45 1 6.4550 -1.3642 -0.4596 46 1 5.1013 -1.1605 0.6819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071128056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = 13.962664 kcal Electronic energy + Delta-G solvation = -30751.293677 eV Core-core repulsion = 26645.445410 eV Total energy + Delta-G solvation = -4105.848268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.20210 -41.96132 -40.20183 -37.95730 -36.24738 -35.25148 -34.87947 -34.26091 -33.03163 -31.13856 -29.89423 -28.78083 -28.30457 -27.63531 -25.68848 -25.02283 -23.65543 -23.11603 -22.13955 -20.94327 -20.23762 -19.06026 -18.98018 -18.63804 -18.14824 -17.82260 -17.27441 -16.89656 -16.63507 -16.15741 -15.76084 -15.41601 -15.36455 -15.07086 -14.82092 -14.48066 -14.39097 -14.19758 -14.00233 -13.92171 -13.60736 -13.40189 -13.22648 -13.10593 -12.93458 -12.83195 -12.76046 -12.43375 -12.27823 -12.21078 -12.06795 -11.97362 -11.81728 -11.67522 -11.59528 -11.24058 -11.06865 -10.79637 -10.40335 -9.75892 -8.98154 -7.82456 -5.28874 -0.06101 0.62357 1.42546 1.42848 1.46294 1.53108 1.86734 2.01560 2.44173 2.50007 2.66241 3.23934 3.29446 3.37675 3.56779 3.67166 3.76040 3.84159 3.87893 3.96155 3.98760 4.11235 4.25971 4.30454 4.38576 4.47419 4.56336 4.58930 4.61140 4.71139 4.77854 4.79313 4.84828 4.85235 4.91698 4.95979 5.01284 5.08737 5.24206 5.25139 5.36741 5.55785 5.73216 5.89893 6.20280 6.24072 6.59495 6.99983 7.04073 7.68544 8.33647 9.18896 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004594 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.264795 B = 6092.951989 C = 7999.756400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.200 4.200 4 C -0.048 4.048 5 C 0.598 3.402 6 O -0.550 6.550 7 N -0.600 5.600 8 C 0.088 3.912 9 C 0.064 3.936 10 H 0.041 0.959 11 C -0.132 4.132 12 O -0.367 6.367 13 C 0.106 3.894 14 C -0.115 4.115 15 C 0.162 3.838 16 N -0.619 5.619 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.058 4.058 20 N -0.943 5.943 21 Si 0.982 3.018 22 H -0.286 1.286 23 H -0.281 1.281 24 H -0.275 1.275 25 C 0.126 3.874 26 C 0.089 3.911 27 N -0.345 5.345 28 O 0.118 5.882 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.195 0.805 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.096 0.904 40 H -0.014 1.014 41 H 0.082 0.918 42 H 0.251 0.749 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.099 0.901 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.107 7.631 -16.815 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.223 4.223 4 C -0.205 4.205 5 C 0.385 3.615 6 O -0.428 6.428 7 N -0.332 5.332 8 C -0.033 4.033 9 C 0.005 3.995 10 H 0.059 0.941 11 C -0.189 4.189 12 O -0.286 6.286 13 C 0.065 3.935 14 C -0.154 4.154 15 C 0.038 3.962 16 N -0.345 5.345 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.809 3.191 22 H -0.212 1.212 23 H -0.207 1.207 24 H -0.201 1.201 25 C 0.000 4.000 26 C -0.034 4.034 27 N -0.048 5.048 28 O 0.044 5.956 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.213 0.787 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.004 0.996 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.117 0.883 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.990 7.078 -16.707 20.249 hybrid contribution -0.332 0.886 1.399 1.689 sum -9.323 7.964 -15.308 19.613 Atomic orbital electron populations 1.20695 0.79683 1.06529 1.06153 1.25308 0.98177 0.83910 0.99943 1.22658 0.88572 1.02876 1.08196 1.23467 0.96976 0.90725 1.09336 1.17197 0.82054 0.85912 0.76336 1.90732 1.86748 1.13396 1.51904 1.48138 1.05927 1.10407 1.68762 1.22548 0.81874 0.99472 0.99404 1.22683 0.98915 0.81720 0.96137 0.94101 1.21690 0.92098 1.01737 1.03394 1.87851 1.28582 1.20062 1.92132 1.22101 0.84379 0.94981 0.92071 1.22906 1.03058 0.91466 0.97962 1.21767 0.91070 0.94519 0.88890 1.44765 1.59267 1.24506 1.05970 1.19325 1.26774 1.06633 0.85193 0.91047 1.25622 1.00101 0.96829 1.02517 1.70010 1.41241 1.13191 1.34748 0.85114 0.78022 0.76910 0.79018 1.21197 1.20725 1.20081 1.21744 0.96047 0.92323 0.89850 1.22813 1.02712 0.79819 0.98094 1.74092 0.98033 1.15379 1.17294 1.84778 1.11030 1.34580 1.65233 0.88213 0.87316 0.86523 0.78747 0.87903 0.87558 0.88442 0.92421 0.90071 0.89158 0.88548 0.99576 0.90059 0.93955 0.96747 0.97160 0.88299 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.44 71.23 0.74 0.25 16 2 C -0.01 -0.18 7.47 25.01 0.19 0.01 16 3 C -0.20 -4.43 10.93 22.60 0.25 -4.18 16 4 C -0.05 -1.41 6.88 42.96 0.30 -1.12 16 5 C 0.60 19.59 7.73 86.93 0.67 20.26 16 6 O -0.55 -19.64 16.43 -3.70 -0.06 -19.70 16 7 N -0.60 -18.73 2.94 -821.31 -2.41 -21.14 16 8 C 0.09 2.38 5.92 86.35 0.51 2.89 16 9 C 0.06 1.95 3.17 30.69 0.10 2.05 16 10 H 0.04 1.48 6.23 -2.39 -0.01 1.46 16 11 C -0.13 -3.03 9.57 71.98 0.69 -2.34 16 12 O -0.37 -13.58 9.90 -148.97 -1.48 -15.06 16 13 C 0.11 4.03 0.80 -10.22 -0.01 4.02 16 14 C -0.12 -4.54 6.23 31.89 0.20 -4.34 16 15 C 0.16 8.44 5.91 86.97 0.51 8.96 16 16 N -0.62 -34.24 3.40 -691.96 -2.35 -36.59 16 17 C -0.25 -14.85 10.28 84.04 0.86 -13.98 16 18 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 20 N -0.94 -57.01 10.09 21.65 0.22 -56.79 16 21 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.13 5.91 6.32 86.48 0.55 6.46 16 26 C 0.09 2.83 4.82 86.07 0.41 3.25 16 27 N -0.35 -9.96 8.70 -49.53 -0.43 -10.39 16 28 O 0.12 2.81 11.18 71.90 0.80 3.61 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.20 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.11 2.76 7.06 -2.39 -0.02 2.75 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 3.32 8.01 -2.39 -0.02 3.30 16 39 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 40 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 41 H 0.08 4.68 5.86 -2.39 -0.01 4.66 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.01 0.70 7.61 -2.39 -0.02 0.68 16 44 H 0.01 0.52 6.02 -2.38 -0.01 0.51 16 45 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.12 3.99 4.19 -2.73 -0.01 3.98 16 Total: -1.00 -76.52 366.07 3.75 -72.76 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.00 Total: 15.39 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.44 Total: 19.29 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -4.98 Total: -124.91 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.73 Total: -31.14 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.52 3.75 -72.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071128056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.724 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds