Wall clock time and date at job start Tue Mar 31 2020 19:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30015 * 127.33241 * 2 1 4 4 O 1.20659 * 112.29992 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15904 * 359.75878 * 4 3 2 6 6 C 1.50695 * 126.83362 * 180.29633 * 5 4 3 7 7 C 1.37367 * 106.33748 * 0.38839 * 5 4 3 8 8 C 1.47399 * 128.56099 * 179.90889 * 7 5 4 9 9 O 1.21603 * 119.99977 * 269.67224 * 8 7 5 10 10 N 1.34778 * 119.99812 * 89.68020 * 8 7 5 11 11 C 1.46978 * 120.71939 * 359.97212 * 10 8 7 12 12 C 1.53163 * 108.44599 * 125.48719 * 11 10 8 13 13 C 1.52504 * 109.79618 * 54.51523 * 12 11 10 14 14 H 1.09005 * 108.93443 * 180.34234 * 13 12 11 15 15 O 1.42687 * 110.62851 * 61.30245 * 13 12 11 16 16 C 1.43078 * 113.86810 * 174.63907 * 15 13 12 17 17 C 1.52811 * 109.51851 * 61.51472 * 16 15 13 18 18 N 1.47164 * 108.92633 * 308.65894 * 17 16 15 19 19 C 1.36940 * 121.22274 * 230.90991 * 18 17 16 20 20 H 1.07995 * 120.00014 * 153.37476 * 19 18 17 21 21 C 1.38812 * 119.99659 * 333.37008 * 19 18 17 22 22 N 1.31617 * 120.00391 * 335.20842 * 21 19 18 23 23 Si 1.86800 * 119.99790 * 155.20626 * 21 19 18 24 24 H 1.48497 * 109.47283 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47258 * 300.00474 * 23 21 19 26 26 H 1.48506 * 109.47123 * 60.00007 * 23 21 19 27 27 C 1.47594 * 117.55319 * 50.63329 * 18 17 16 28 28 H 1.09003 * 110.31565 * 186.93635 * 27 18 17 29 29 C 1.46792 * 120.71939 * 179.97438 * 10 8 7 30 30 H 1.08995 * 109.47318 * 269.99888 * 1 2 3 31 31 H 1.09006 * 109.46798 * 30.00112 * 1 2 3 32 32 H 1.08994 * 109.46627 * 149.99374 * 1 2 3 33 33 H 1.08996 * 109.47110 * 270.10958 * 6 5 4 34 34 H 1.09008 * 109.46842 * 30.11166 * 6 5 4 35 35 H 1.09002 * 109.47124 * 150.10266 * 6 5 4 36 36 H 1.09004 * 109.64140 * 245.16676 * 11 10 8 37 37 H 1.09003 * 109.64708 * 5.79764 * 11 10 8 38 38 H 1.09000 * 109.41671 * 174.61148 * 12 11 10 39 39 H 1.08999 * 109.41332 * 294.41038 * 12 11 10 40 40 H 1.09004 * 109.47539 * 181.64370 * 16 15 13 41 41 H 1.09001 * 109.47909 * 301.65820 * 16 15 13 42 42 H 1.09002 * 109.52876 * 188.79131 * 17 16 15 43 43 H 1.09001 * 109.43621 * 68.46738 * 17 16 15 44 44 H 0.96999 * 119.99606 * 354.23631 * 22 21 19 45 45 H 1.09008 * 109.51951 * 114.37000 * 29 10 8 46 46 H 1.09000 * 109.57705 * 354.21314 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0061 6 6 4.9712 -1.3245 0.0145 7 6 2.3992 -1.1696 0.0005 8 6 2.0402 -2.5992 0.0014 9 8 1.8919 -3.1894 -1.0514 10 7 1.8762 -3.2521 1.1690 11 6 2.0520 -2.5542 2.4506 12 6 0.7833 -2.7488 3.2864 13 6 0.4759 -4.2365 3.4199 14 1 -0.4317 -4.3585 4.0112 15 8 1.5414 -4.9122 4.0863 16 6 1.2727 -6.2912 4.3571 17 6 1.0580 -7.0376 3.0411 18 7 0.0568 -6.3149 2.2403 19 6 -1.0253 -6.9614 1.7052 20 1 -1.9365 -6.4165 1.5079 21 6 -0.9507 -8.3170 1.4163 22 7 0.2172 -8.8768 1.1821 23 14 -2.5081 -9.3470 1.3601 24 1 -2.1601 -10.7532 1.0337 25 1 -3.1818 -9.2984 2.6826 26 1 -3.4207 -8.8081 0.3197 27 6 0.2586 -4.8665 2.0405 28 1 -0.6057 -4.4295 1.5405 29 6 1.5182 -4.6755 1.1884 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3632 -0.8899 -0.5139 33 1 5.2953 -1.5010 -1.0111 34 1 5.7147 -0.7173 0.5312 35 1 4.8597 -2.2786 0.5297 36 1 2.9077 -2.9722 2.9810 37 1 2.2124 -1.4913 2.2701 38 1 0.9326 -2.3193 4.2770 39 1 -0.0527 -2.2483 2.7978 40 1 2.1170 -6.7280 4.8906 41 1 0.3745 -6.3732 4.9691 42 1 0.7014 -8.0466 3.2484 43 1 1.9992 -7.0853 2.4934 44 1 1.0157 -8.3287 1.1285 45 1 2.3384 -5.2516 1.6169 46 1 1.3252 -5.0174 0.1715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:34 Heat of formation + Delta-G solvation = 11.535396 kcal Electronic energy + Delta-G solvation = -30974.329571 eV Core-core repulsion = 26868.376049 eV Total energy + Delta-G solvation = -4105.953522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.00444 -40.24396 -38.71753 -35.92657 -35.00634 -34.68596 -33.75223 -31.88388 -31.56598 -29.71225 -28.94776 -28.34626 -27.36019 -25.55202 -23.98566 -23.58929 -22.89193 -21.54208 -20.57323 -19.60385 -18.56763 -18.02046 -17.68696 -17.40733 -16.51921 -15.88965 -15.70686 -15.38616 -15.09803 -14.58347 -14.41796 -14.03427 -13.79150 -13.75548 -13.65118 -13.58955 -13.36459 -13.27848 -12.93125 -12.76855 -12.68085 -12.54925 -12.38020 -12.18953 -11.56170 -11.47016 -11.24172 -10.94839 -10.71595 -10.58690 -10.44513 -10.19321 -10.10692 -9.97330 -9.90756 -9.57511 -9.42901 -9.21595 -8.57373 -8.39078 -7.02587 -6.18441 -3.37154 1.16653 1.77758 2.45221 2.70533 3.16516 3.44790 3.46524 3.65120 3.93298 4.09871 4.13311 4.44849 4.54349 4.75785 4.83407 5.00173 5.02569 5.11410 5.12752 5.21507 5.24139 5.30186 5.35714 5.39646 5.47342 5.49288 5.58108 5.61670 5.67685 5.80715 5.84830 5.87229 5.90084 5.99234 6.08599 6.12639 6.23297 6.42998 6.53937 6.68532 6.75728 6.92737 7.49953 7.66180 7.82738 8.07318 8.20539 8.42008 8.91248 9.68186 10.09229 11.09398 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.003572 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.958327 B = 7836.187924 C = 8209.840243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.358 5.358 4 O 0.094 5.906 5 C 0.011 3.989 6 C -0.077 4.077 7 C -0.239 4.239 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.593 5.593 11 C 0.115 3.885 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.054 0.946 15 O -0.386 6.386 16 C 0.046 3.954 17 C 0.115 3.885 18 N -0.590 5.590 19 C -0.353 4.353 20 H 0.060 0.940 21 C -0.019 4.019 22 N -0.910 5.910 23 Si 1.066 2.934 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.137 3.863 28 H 0.077 0.923 29 C 0.104 3.896 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.270 0.730 45 H 0.069 0.931 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 15.872 4.091 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.065 5.065 4 O 0.032 5.968 5 C -0.052 4.052 6 C -0.135 4.135 7 C -0.246 4.246 8 C 0.378 3.622 9 O -0.403 6.403 10 N -0.325 5.325 11 C -0.008 4.008 12 C -0.160 4.160 13 C 0.022 3.978 14 H 0.072 0.928 15 O -0.305 6.305 16 C -0.032 4.032 17 C -0.011 4.011 18 N -0.313 5.313 19 C -0.482 4.482 20 H 0.078 0.922 21 C -0.222 4.222 22 N -0.550 5.550 23 Si 0.895 3.105 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.218 1.218 27 C 0.028 3.972 28 H 0.096 0.904 29 C -0.020 4.020 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.731 15.327 3.375 16.708 hybrid contribution 0.229 0.669 0.098 0.714 sum 5.960 15.996 3.473 17.420 Atomic orbital electron populations 1.20242 0.85149 1.04389 1.03846 1.24748 0.98592 0.86486 1.00921 1.73599 0.89148 1.23339 1.20403 1.84511 1.21486 1.22592 1.68172 1.24589 0.97420 0.83664 0.99524 1.20452 0.88948 0.99264 1.04813 1.21981 0.92818 0.95545 1.14256 1.16961 0.77526 0.83767 0.83971 1.90839 1.50729 1.67727 1.30984 1.48213 1.67513 1.11796 1.05021 1.21628 0.98667 0.96585 0.83902 1.21790 0.98263 0.95415 1.00557 1.22220 0.90170 0.90851 0.94580 0.92781 1.87727 1.41405 1.23293 1.78080 1.23094 1.00114 0.81674 0.98313 1.21561 0.92427 0.97239 0.89835 1.44345 1.26846 1.02552 1.57598 1.19961 0.90377 0.95186 1.42677 0.92227 1.25893 1.03463 0.96028 0.96792 1.70800 0.99884 1.39673 1.44606 0.83511 0.74395 0.76367 0.76212 1.20980 1.21981 1.21848 1.21599 0.95598 0.87305 0.92656 0.90438 1.22419 0.98803 0.77820 1.02919 0.89590 0.89963 0.89572 0.88687 0.89132 0.88807 0.90378 0.90703 0.90222 0.90389 0.89788 0.93675 0.89358 0.95516 0.91940 0.91264 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16 2 C 0.05 0.71 7.56 -79.77 -0.60 0.10 16 3 N -0.36 -4.71 12.01 34.78 0.42 -4.29 16 4 O 0.09 1.13 11.06 18.65 0.21 1.34 16 5 C 0.01 0.13 7.55 -34.63 -0.26 -0.13 16 6 C -0.08 -0.62 10.33 36.00 0.37 -0.25 16 7 C -0.24 -3.28 4.19 -102.89 -0.43 -3.71 16 8 C 0.59 9.82 7.49 -12.53 -0.09 9.73 16 9 O -0.53 -10.92 16.52 5.28 0.09 -10.83 16 10 N -0.59 -9.34 2.96 -174.08 -0.52 -9.85 16 11 C 0.12 1.46 6.17 -3.70 -0.02 1.44 16 12 C -0.12 -1.55 5.82 -26.90 -0.16 -1.71 16 13 C 0.08 1.36 2.73 -26.89 -0.07 1.28 16 14 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 15 O -0.39 -6.70 9.59 -35.23 -0.34 -7.03 16 16 C 0.05 0.82 6.96 37.06 0.26 1.08 16 17 C 0.12 2.52 4.32 -3.78 -0.02 2.50 16 18 N -0.59 -13.88 2.58 -164.15 -0.42 -14.31 16 19 C -0.35 -9.43 9.59 -15.06 -0.14 -9.57 16 20 H 0.06 1.61 7.94 -52.49 -0.42 1.19 16 21 C -0.02 -0.52 4.73 -17.43 -0.08 -0.60 16 22 N -0.91 -26.25 12.44 55.49 0.69 -25.56 16 23 Si 1.07 24.45 29.99 -169.99 -5.10 19.36 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.14 2.72 3.02 -67.09 -0.20 2.51 16 28 H 0.08 1.61 7.99 -51.93 -0.42 1.20 16 29 C 0.10 1.99 5.62 -3.74 -0.02 1.97 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 37 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.09 2.15 6.43 -51.93 -0.33 1.82 16 43 H 0.03 0.61 6.82 -51.93 -0.35 0.25 16 44 H 0.27 7.83 6.60 -40.82 -0.27 7.56 16 45 H 0.07 1.39 6.58 -51.92 -0.34 1.04 16 46 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.10 368.16 -7.20 -39.31 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.68 Total: 2.12 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.10 Total: 4.20 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.17 Total: -54.01 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.04 Total: -16.53 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.10 -7.20 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.842 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds