Wall clock time and date at job start Tue Mar 31 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35451 * 126.77598 * 2 1 4 4 C 1.41385 * 103.98556 * 180.10265 * 3 2 1 5 5 C 1.50697 * 126.80348 * 179.88706 * 4 3 2 6 6 C 1.50697 * 109.47034 * 124.70606 * 5 4 3 7 7 O 1.21286 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00194 * 179.97438 * 6 5 4 9 9 C 1.46844 * 120.40949 * 0.02562 * 8 6 5 10 10 C 1.53359 * 109.28303 * 232.25398 * 9 8 6 11 11 C 1.52789 * 108.82586 * 306.13998 * 10 9 8 12 12 H 1.08996 * 109.34366 * 302.83260 * 11 10 9 13 13 O 1.42602 * 111.11441 * 182.03813 * 11 10 9 14 14 C 1.43148 * 113.62481 * 176.36989 * 13 11 10 15 15 C 1.53193 * 109.74658 * 61.68102 * 14 13 11 16 16 N 1.47346 * 108.80886 * 308.80475 * 15 14 13 17 17 C 1.36936 * 121.30775 * 230.25438 * 16 15 14 18 18 H 1.08002 * 119.99943 * 152.50750 * 17 16 15 19 19 C 1.38814 * 119.99970 * 332.50920 * 17 16 15 20 20 N 1.31617 * 119.99802 * 344.73858 * 19 17 16 21 21 Si 1.86794 * 119.99691 * 164.74079 * 19 17 16 22 22 H 1.48499 * 109.47425 * 60.00327 * 21 19 17 23 23 H 1.48503 * 109.46909 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47693 * 299.99703 * 21 19 17 25 25 C 1.46813 * 117.00768 * 50.54623 * 16 15 14 26 26 H 1.08994 * 110.03411 * 67.11615 * 25 16 15 27 27 C 1.47220 * 120.47425 * 180.02562 * 8 6 5 28 28 N 1.30178 * 106.39337 * 359.62298 * 4 3 2 29 29 O 1.20926 * 111.60311 * 0.24476 * 28 4 3 30 30 H 1.09001 * 109.46741 * 180.30311 * 1 2 3 31 31 H 1.09004 * 109.46398 * 300.29859 * 1 2 3 32 32 H 1.08993 * 109.47318 * 60.30078 * 1 2 3 33 33 H 1.07997 * 128.00487 * 359.96228 * 3 2 1 34 34 H 1.09006 * 109.47055 * 4.71040 * 5 4 3 35 35 H 1.08998 * 109.47123 * 244.71002 * 5 4 3 36 36 H 1.08999 * 109.50635 * 112.29913 * 9 8 6 37 37 H 1.09005 * 109.50786 * 352.20746 * 9 8 6 38 38 H 1.08997 * 109.58265 * 65.93934 * 10 9 8 39 39 H 1.08997 * 109.58229 * 186.33697 * 10 9 8 40 40 H 1.08995 * 109.42857 * 181.76993 * 14 13 11 41 41 H 1.09005 * 109.42783 * 301.65657 * 14 13 11 42 42 H 1.09004 * 109.57745 * 68.60273 * 15 14 13 43 43 H 1.09001 * 109.58488 * 189.00214 * 15 14 13 44 44 H 0.96996 * 119.99645 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.70427 * 7.10702 * 27 8 6 46 46 H 1.09000 * 109.75401 * 246.47679 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0025 5 6 4.9211 1.3000 -0.0059 6 6 5.7663 0.8574 1.1606 7 8 5.3541 0.0060 1.9197 8 7 6.9808 1.4069 1.3597 9 6 7.4890 2.4379 0.4460 10 6 8.8845 2.0351 -0.0462 11 6 9.7730 1.7561 1.1651 12 1 9.8010 2.6391 1.8035 13 8 11.0996 1.4215 0.7630 14 6 12.0000 1.2295 1.8591 15 6 11.5180 0.0624 2.7266 16 7 10.0997 0.2757 3.0643 17 6 9.6552 0.1892 4.3566 18 1 8.7853 0.7490 4.6671 19 6 10.3227 -0.6179 5.2677 20 7 11.1809 -1.5205 4.8420 21 14 10.0029 -0.4230 7.0977 22 1 8.5670 -0.6761 7.3790 23 1 10.8335 -1.3961 7.8517 24 1 10.3537 0.9576 7.5173 25 6 9.1880 0.5774 1.9539 26 1 9.0945 -0.2904 1.3011 27 6 7.8154 0.9819 2.4956 28 7 3.4764 -0.7564 0.0046 29 8 2.3095 -1.0736 0.0060 30 1 -0.3633 -1.0277 0.0054 31 1 -0.3632 0.5185 0.8874 32 1 -0.3633 0.5091 -0.8926 33 1 2.0344 2.1270 -0.0006 34 1 4.7163 2.3673 0.0782 35 1 5.4546 1.1046 -0.9361 36 1 7.5491 3.3915 0.9705 37 1 6.8159 2.5329 -0.4062 38 1 8.8106 1.1371 -0.6594 39 1 9.3130 2.8468 -0.6340 40 1 12.9962 1.0089 1.4756 41 1 12.0364 2.1371 2.4617 42 1 11.6258 -0.8715 2.1750 43 1 12.1089 0.0188 3.6415 44 1 11.6476 -2.0842 5.4786 45 1 7.3514 0.1310 2.9945 46 1 7.9259 1.8061 3.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074197043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:37 Heat of formation + Delta-G solvation = 16.891784 kcal Electronic energy + Delta-G solvation = -29864.159906 eV Core-core repulsion = 25758.438655 eV Total energy + Delta-G solvation = -4105.721251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.96130 -40.15643 -38.60149 -36.10708 -34.80425 -34.62264 -33.51181 -31.93616 -31.39742 -30.17562 -29.21178 -27.95230 -26.97015 -25.08522 -23.94678 -23.19013 -22.17243 -21.61890 -20.49743 -19.67191 -18.66060 -17.77363 -17.36027 -16.89339 -16.79312 -15.69424 -15.51313 -15.42352 -15.09012 -14.68005 -14.49387 -14.06718 -14.00323 -13.78601 -13.55069 -13.41738 -13.06975 -13.06418 -12.98169 -12.79687 -12.55412 -12.52441 -12.18242 -11.87494 -11.35979 -11.13883 -11.00993 -10.93773 -10.85146 -10.60670 -10.26261 -10.24550 -10.23835 -9.98949 -9.63099 -9.53995 -9.37814 -8.99532 -8.53354 -8.36288 -6.73025 -5.83691 -3.29531 1.43013 2.12941 2.77722 3.03177 3.16306 3.37292 3.42489 3.43371 4.02159 4.23111 4.26053 4.43387 4.62602 4.83277 4.86499 4.95546 4.99198 5.08671 5.15405 5.22149 5.27508 5.32470 5.36255 5.39404 5.46460 5.53023 5.68201 5.69060 5.73705 5.86257 5.92753 5.94916 6.09434 6.13966 6.24347 6.32736 6.45860 6.64477 6.70652 6.87328 7.12747 7.50418 7.57815 7.71176 7.88532 8.29396 8.32228 8.36370 9.09817 9.73197 10.31705 11.24432 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003245 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.138178 B = 8625.812204 C =10142.446772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.041 4.041 3 C -0.230 4.230 4 C 0.027 3.973 5 C -0.061 4.061 6 C 0.514 3.486 7 O -0.522 6.522 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.125 4.125 11 C 0.077 3.923 12 H 0.053 0.947 13 O -0.390 6.390 14 C 0.040 3.960 15 C 0.141 3.859 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.071 0.929 19 C 0.007 3.993 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.137 3.863 26 H 0.037 0.963 27 C 0.125 3.875 28 N -0.333 5.333 29 O 0.105 5.895 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.101 0.899 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.109 10.964 -13.212 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.251 4.251 4 C -0.132 4.132 5 C -0.102 4.102 6 C 0.300 3.700 7 O -0.397 6.397 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.164 4.164 11 C 0.017 3.983 12 H 0.071 0.929 13 O -0.309 6.309 14 C -0.038 4.038 15 C 0.016 3.984 16 N -0.312 5.312 17 C -0.388 4.388 18 H 0.089 0.911 19 C -0.192 4.192 20 N -0.545 5.545 21 Si 0.734 3.266 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.029 3.971 26 H 0.055 0.945 27 C 0.004 3.996 28 N -0.034 5.034 29 O 0.035 5.965 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.187 0.813 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.119 0.881 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.309 9.310 -12.838 21.360 hybrid contribution -0.249 0.855 1.233 1.521 sum -14.558 10.165 -11.606 21.212 Atomic orbital electron populations 1.20308 0.84211 1.04620 1.03866 1.24475 0.96385 0.86402 1.03200 1.22305 0.91108 1.00893 1.10813 1.22807 0.95973 0.90157 1.04262 1.20051 0.90463 1.00225 0.99460 1.20217 0.81672 0.81916 0.86239 1.90771 1.71238 1.31000 1.46728 1.48279 1.16897 1.40117 1.29389 1.21719 0.95130 0.91136 0.93269 1.21848 0.93831 1.02703 0.97997 1.22436 0.83504 0.97636 0.94733 0.92901 1.87736 1.19438 1.90976 1.32737 1.23330 0.92014 0.99670 0.88796 1.21446 0.85733 0.92960 0.98284 1.44026 1.02016 1.83184 1.01937 1.19076 1.13483 1.21550 0.84698 0.91105 1.25088 0.99949 0.95392 0.98792 1.70007 1.30193 1.20964 1.33304 0.86337 0.77953 0.77374 0.84956 1.20658 1.21512 1.20912 1.21314 0.89749 0.95007 0.91068 0.94529 1.21790 0.89940 1.01510 0.86390 1.73931 0.96208 1.16229 1.16985 1.84884 1.11399 1.33193 1.67013 0.89943 0.89319 0.89332 0.81250 0.86791 0.87020 0.91006 0.89647 0.90803 0.90177 0.90065 0.94115 0.95430 0.88696 0.93407 0.88069 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.01 0.38 0.00 16 2 C -0.04 -0.41 7.49 -35.30 -0.26 -0.68 16 3 C -0.23 -2.34 11.05 -39.38 -0.44 -2.78 16 4 C 0.03 0.37 6.10 -82.10 -0.50 -0.13 16 5 C -0.06 -0.70 4.64 -29.04 -0.13 -0.84 16 6 C 0.51 8.49 7.69 -10.99 -0.08 8.40 16 7 O -0.52 -11.31 15.00 5.55 0.08 -11.23 16 8 N -0.61 -9.65 2.98 -172.60 -0.52 -10.16 16 9 C 0.11 1.25 6.31 -3.67 -0.02 1.22 16 10 C -0.13 -1.67 5.82 -26.65 -0.16 -1.82 16 11 C 0.08 1.38 2.49 -26.63 -0.07 1.32 16 12 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 13 O -0.39 -7.68 10.48 -35.23 -0.37 -8.04 16 14 C 0.04 0.78 6.95 37.26 0.26 1.04 16 15 C 0.14 3.41 5.41 -3.48 -0.02 3.39 16 16 N -0.59 -14.80 3.04 -164.39 -0.50 -15.30 16 17 C -0.26 -7.03 8.86 -15.06 -0.13 -7.17 16 18 H 0.07 1.87 6.28 -52.49 -0.33 1.54 16 19 C 0.01 0.20 4.99 -17.43 -0.09 0.11 16 20 N -0.90 -26.23 11.16 55.49 0.62 -25.61 16 21 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.14 2.95 3.02 -67.54 -0.20 2.75 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 C 0.13 2.50 4.49 -3.64 -0.02 2.48 16 28 N -0.33 -5.43 11.46 33.43 0.38 -5.05 16 29 O 0.11 1.46 11.20 17.19 0.19 1.65 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.11 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.11 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.65 5.91 -51.93 -0.31 0.35 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.48 6.23 -51.93 -0.32 2.16 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.10 2.39 6.82 -51.93 -0.35 2.04 16 46 H 0.07 1.44 7.33 -51.93 -0.38 1.06 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -35.96 366.09 -7.82 -43.78 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.71 Total: 0.31 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.49 Total: 7.31 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.01 Total: -56.12 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.09 Total: -17.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.96 -7.82 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074197043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.668 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds