Wall clock time and date at job start Tue Mar 31 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35451 * 126.77598 * 2 1 4 4 C 1.41385 * 103.98556 * 180.10265 * 3 2 1 5 5 C 1.50697 * 126.80348 * 179.88706 * 4 3 2 6 6 C 1.50697 * 109.47034 * 124.70606 * 5 4 3 7 7 O 1.21286 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00194 * 179.97438 * 6 5 4 9 9 C 1.46844 * 120.40949 * 0.02562 * 8 6 5 10 10 C 1.53359 * 109.28303 * 232.25398 * 9 8 6 11 11 C 1.52789 * 108.82586 * 306.13998 * 10 9 8 12 12 H 1.08996 * 109.34366 * 302.83260 * 11 10 9 13 13 O 1.42602 * 111.11441 * 182.03813 * 11 10 9 14 14 C 1.43148 * 113.62481 * 176.36989 * 13 11 10 15 15 C 1.53193 * 109.74658 * 61.68102 * 14 13 11 16 16 N 1.47346 * 108.80886 * 308.80475 * 15 14 13 17 17 C 1.36936 * 121.30775 * 230.25438 * 16 15 14 18 18 H 1.08002 * 119.99943 * 152.50750 * 17 16 15 19 19 C 1.38814 * 119.99970 * 332.50920 * 17 16 15 20 20 N 1.31617 * 119.99802 * 344.73858 * 19 17 16 21 21 Si 1.86794 * 119.99691 * 164.74079 * 19 17 16 22 22 H 1.48499 * 109.47425 * 60.00327 * 21 19 17 23 23 H 1.48503 * 109.46909 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47693 * 299.99703 * 21 19 17 25 25 C 1.46813 * 117.00768 * 50.54623 * 16 15 14 26 26 H 1.08994 * 110.03411 * 67.11615 * 25 16 15 27 27 C 1.47220 * 120.47425 * 180.02562 * 8 6 5 28 28 N 1.30178 * 106.39337 * 359.62298 * 4 3 2 29 29 O 1.20926 * 111.60311 * 0.24476 * 28 4 3 30 30 H 1.09001 * 109.46741 * 180.30311 * 1 2 3 31 31 H 1.09004 * 109.46398 * 300.29859 * 1 2 3 32 32 H 1.08993 * 109.47318 * 60.30078 * 1 2 3 33 33 H 1.07997 * 128.00487 * 359.96228 * 3 2 1 34 34 H 1.09006 * 109.47055 * 4.71040 * 5 4 3 35 35 H 1.08998 * 109.47123 * 244.71002 * 5 4 3 36 36 H 1.08999 * 109.50635 * 112.29913 * 9 8 6 37 37 H 1.09005 * 109.50786 * 352.20746 * 9 8 6 38 38 H 1.08997 * 109.58265 * 65.93934 * 10 9 8 39 39 H 1.08997 * 109.58229 * 186.33697 * 10 9 8 40 40 H 1.08995 * 109.42857 * 181.76993 * 14 13 11 41 41 H 1.09005 * 109.42783 * 301.65657 * 14 13 11 42 42 H 1.09004 * 109.57745 * 68.60273 * 15 14 13 43 43 H 1.09001 * 109.58488 * 189.00214 * 15 14 13 44 44 H 0.96996 * 119.99645 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.70427 * 7.10702 * 27 8 6 46 46 H 1.09000 * 109.75401 * 246.47679 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6214 0.5373 -0.0025 5 6 4.9211 1.3000 -0.0059 6 6 5.7663 0.8574 1.1606 7 8 5.3541 0.0060 1.9197 8 7 6.9808 1.4069 1.3597 9 6 7.4890 2.4379 0.4460 10 6 8.8845 2.0351 -0.0462 11 6 9.7730 1.7561 1.1651 12 1 9.8010 2.6391 1.8035 13 8 11.0996 1.4215 0.7630 14 6 12.0000 1.2295 1.8591 15 6 11.5180 0.0624 2.7266 16 7 10.0997 0.2757 3.0643 17 6 9.6552 0.1892 4.3566 18 1 8.7853 0.7490 4.6671 19 6 10.3227 -0.6179 5.2677 20 7 11.1809 -1.5205 4.8420 21 14 10.0029 -0.4230 7.0977 22 1 8.5670 -0.6761 7.3790 23 1 10.8335 -1.3961 7.8517 24 1 10.3537 0.9576 7.5173 25 6 9.1880 0.5774 1.9539 26 1 9.0945 -0.2904 1.3011 27 6 7.8154 0.9819 2.4956 28 7 3.4764 -0.7564 0.0046 29 8 2.3095 -1.0736 0.0060 30 1 -0.3633 -1.0277 0.0054 31 1 -0.3632 0.5185 0.8874 32 1 -0.3633 0.5091 -0.8926 33 1 2.0344 2.1270 -0.0006 34 1 4.7163 2.3673 0.0782 35 1 5.4546 1.1046 -0.9361 36 1 7.5491 3.3915 0.9705 37 1 6.8159 2.5329 -0.4062 38 1 8.8106 1.1371 -0.6594 39 1 9.3130 2.8468 -0.6340 40 1 12.9962 1.0089 1.4756 41 1 12.0364 2.1371 2.4617 42 1 11.6258 -0.8715 2.1750 43 1 12.1089 0.0188 3.6415 44 1 11.6476 -2.0842 5.4786 45 1 7.3514 0.1310 2.9945 46 1 7.9259 1.8061 3.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074197043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:36 Heat of formation + Delta-G solvation = -9.373095 kcal Electronic energy + Delta-G solvation = -29865.298837 eV Core-core repulsion = 25758.438655 eV Total energy + Delta-G solvation = -4106.860182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.87249 -41.53088 -40.12114 -37.49267 -36.57851 -35.64493 -34.24319 -33.58847 -33.03338 -31.63439 -30.42953 -28.81049 -28.53975 -26.64853 -25.49298 -24.15130 -23.71621 -22.99228 -21.76885 -21.26406 -19.79120 -18.80356 -18.71905 -18.34519 -17.95944 -17.19294 -17.06236 -16.75762 -16.63200 -16.25489 -15.66087 -15.60051 -15.43024 -14.93136 -14.73415 -14.61282 -14.48061 -14.09968 -14.00695 -13.90608 -13.77142 -13.34247 -13.31215 -13.09803 -13.02703 -12.82833 -12.72669 -12.44333 -12.33185 -12.11847 -11.98551 -11.93912 -11.75823 -11.27844 -11.22491 -10.79474 -10.77097 -10.55385 -10.18038 -9.72828 -8.78540 -7.95981 -5.45397 0.62730 1.24449 1.40917 1.43165 1.49711 1.54564 1.93893 2.35617 2.43123 2.81474 3.17093 3.18978 3.39581 3.46823 3.67952 3.85340 3.95694 4.06047 4.16118 4.16649 4.21030 4.25495 4.34959 4.38983 4.46974 4.48853 4.54234 4.59744 4.65068 4.71561 4.78310 4.81477 4.84665 4.93892 4.98476 5.06280 5.10136 5.10828 5.29694 5.32503 5.41094 5.50214 5.56861 6.21803 6.31596 6.36666 6.99754 7.11755 7.43652 7.67442 8.23657 9.10089 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003245 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.138178 B = 8625.812204 C =10142.446772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.043 4.043 3 C -0.228 4.228 4 C 0.010 3.990 5 C -0.051 4.051 6 C 0.505 3.495 7 O -0.587 6.587 8 N -0.610 5.610 9 C 0.107 3.893 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.061 0.939 13 O -0.392 6.392 14 C 0.053 3.947 15 C 0.145 3.855 16 N -0.605 5.605 17 C -0.263 4.263 18 H 0.074 0.926 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.268 1.268 25 C 0.133 3.867 26 H -0.002 1.002 27 C 0.141 3.859 28 N -0.393 5.393 29 O 0.079 5.921 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.052 0.948 42 H -0.008 1.008 43 H 0.070 0.930 44 H 0.252 0.748 45 H 0.050 0.950 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.864 15.232 -15.145 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C -0.249 4.249 4 C -0.149 4.149 5 C -0.091 4.091 6 C 0.294 3.706 7 O -0.467 6.467 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.157 4.157 11 C 0.021 3.979 12 H 0.079 0.921 13 O -0.312 6.312 14 C -0.024 4.024 15 C 0.019 3.981 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.193 1.193 25 C 0.026 3.974 26 H 0.016 0.984 27 C 0.017 3.983 28 N -0.098 5.098 29 O 0.012 5.988 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.226 0.774 34 H 0.184 0.816 35 H 0.155 0.845 36 H 0.117 0.883 37 H 0.154 0.846 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.011 0.989 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.085 13.630 -14.827 25.775 hybrid contribution 0.214 -0.521 1.795 1.881 sum -15.872 13.110 -13.032 24.364 Atomic orbital electron populations 1.20559 0.80847 1.05554 1.05827 1.25443 0.98226 0.85563 1.01363 1.22778 0.89387 1.02635 1.10148 1.23405 0.98068 0.89829 1.03550 1.20238 0.88780 1.02594 0.97445 1.21257 0.81809 0.80701 0.86840 1.90748 1.72706 1.33882 1.49356 1.48361 1.16340 1.40857 1.28752 1.22190 0.94652 0.90291 0.94276 1.21918 0.94061 1.03765 0.95918 1.22561 0.83174 0.95400 0.96758 0.92119 1.87747 1.20104 1.90806 1.32496 1.23157 0.93102 0.97750 0.88417 1.21321 0.85446 0.93702 0.97613 1.44342 1.03127 1.83154 1.02419 1.19400 1.13110 1.20902 0.85864 0.90869 1.25888 1.00290 0.95393 1.02919 1.70174 1.31575 1.22125 1.34300 0.85325 0.77321 0.77776 0.79953 1.20876 1.21757 1.19315 1.21475 0.90609 0.95421 0.89936 0.98436 1.21246 0.89296 0.99660 0.88070 1.73929 0.97597 1.18437 1.19874 1.84808 1.11356 1.34884 1.67723 0.89626 0.87718 0.86647 0.77355 0.81603 0.84477 0.88257 0.84564 0.91837 0.86283 0.87314 0.92955 0.98947 0.91148 0.93922 0.93137 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 71.24 0.74 0.19 16 2 C -0.04 -0.80 7.49 25.04 0.19 -0.61 16 3 C -0.23 -4.01 11.05 22.40 0.25 -3.76 16 4 C 0.01 0.26 6.10 43.58 0.27 0.53 16 5 C -0.05 -0.99 4.64 29.10 0.13 -0.86 16 6 C 0.50 16.34 7.69 87.66 0.67 17.02 16 7 O -0.59 -26.71 15.00 -3.05 -0.05 -26.75 16 8 N -0.61 -18.40 2.98 -818.38 -2.44 -20.85 16 9 C 0.11 1.89 6.31 86.43 0.55 2.43 16 10 C -0.12 -2.70 5.82 30.64 0.18 -2.52 16 11 C 0.08 2.76 2.49 30.66 0.08 2.84 16 12 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 13 O -0.39 -14.84 10.48 -148.98 -1.56 -16.41 16 14 C 0.05 2.07 6.95 72.05 0.50 2.57 16 15 C 0.14 7.31 5.41 86.28 0.47 7.78 16 16 N -0.61 -31.88 3.04 -674.01 -2.05 -33.92 16 17 C -0.26 -14.89 8.86 84.03 0.74 -14.14 16 18 H 0.07 4.02 6.28 -2.91 -0.02 4.00 16 19 C -0.05 -2.85 4.99 84.86 0.42 -2.42 16 20 N -0.94 -57.33 11.16 21.65 0.24 -57.09 16 21 Si 0.97 46.41 29.58 68.60 2.03 48.44 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.13 5.93 3.02 45.07 0.14 6.07 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 C 0.14 5.81 4.49 86.25 0.39 6.20 16 28 N -0.39 -13.18 11.46 -49.54 -0.57 -13.75 16 29 O 0.08 2.25 11.20 71.67 0.80 3.05 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.17 1.45 7.95 -2.38 -0.02 1.43 16 35 H 0.14 1.99 7.66 -2.39 -0.02 1.97 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.14 1.13 5.91 -2.38 -0.01 1.11 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 42 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 43 H 0.07 3.87 6.23 -2.39 -0.01 3.85 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.05 2.58 6.82 -2.39 -0.02 2.56 16 46 H 0.07 3.01 7.33 -2.39 -0.02 3.00 16 Total: -1.00 -89.50 366.09 3.12 -86.38 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.99 Total: 9.57 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 5.71 Total: 21.32 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -4.81 Total: -125.60 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.80 Total: -40.11 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -89.50 3.12 -86.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074197043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.011 kcal (2) G-P(sol) polarization free energy of solvation -89.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds