Wall clock time and date at job start Tue Mar 31 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35451 * 126.77360 * 2 1 4 4 C 1.41385 * 103.98075 * 180.10247 * 3 2 1 5 5 C 1.50701 * 126.79946 * 179.89540 * 4 3 2 6 6 C 1.50700 * 109.47076 * 124.70584 * 5 4 3 7 7 O 1.21283 * 120.00165 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46989 * 120.71912 * 359.72653 * 8 6 5 10 10 C 1.52723 * 108.67652 * 234.51609 * 9 8 6 11 11 C 1.52506 * 109.86257 * 305.69247 * 10 9 8 12 12 H 1.09001 * 108.93223 * 179.54288 * 11 10 9 13 13 O 1.42695 * 110.62330 * 298.58414 * 11 10 9 14 14 C 1.43073 * 113.86963 * 185.35762 * 13 11 10 15 15 C 1.53232 * 109.44654 * 298.34643 * 14 13 11 16 16 N 1.47167 * 108.69726 * 51.58544 * 15 14 13 17 17 C 1.36936 * 121.22540 * 129.08251 * 16 15 14 18 18 H 1.07997 * 120.00151 * 206.09139 * 17 16 15 19 19 C 1.38815 * 119.99960 * 26.08849 * 17 16 15 20 20 N 1.31622 * 119.99685 * 16.91466 * 19 17 16 21 21 Si 1.86800 * 120.00265 * 196.91140 * 19 17 16 22 22 H 1.48494 * 109.47061 * 89.99998 * 21 19 17 23 23 H 1.48496 * 109.47084 * 210.00361 * 21 19 17 24 24 H 1.48498 * 109.46981 * 330.00311 * 21 19 17 25 25 C 1.47596 * 117.55529 * 309.05725 * 16 15 14 26 26 H 1.08997 * 111.17082 * 172.79522 * 25 16 15 27 27 C 1.46787 * 120.72234 * 179.97438 * 8 6 5 28 28 N 1.30180 * 106.39517 * 359.62346 * 4 3 2 29 29 O 1.20918 * 111.60335 * 0.24979 * 28 4 3 30 30 H 1.08997 * 109.47364 * 180.29511 * 1 2 3 31 31 H 1.09000 * 109.46744 * 300.29794 * 1 2 3 32 32 H 1.09005 * 109.46785 * 60.29270 * 1 2 3 33 33 H 1.07993 * 128.01111 * 359.96941 * 3 2 1 34 34 H 1.08994 * 109.47390 * 4.70667 * 5 4 3 35 35 H 1.08998 * 109.46801 * 244.70441 * 5 4 3 36 36 H 1.09003 * 109.63554 * 354.23729 * 9 8 6 37 37 H 1.08995 * 109.64575 * 114.86666 * 9 8 6 38 38 H 1.08996 * 109.48070 * 185.51096 * 10 9 8 39 39 H 1.09000 * 109.22594 * 65.71689 * 10 9 8 40 40 H 1.09000 * 109.47553 * 58.34217 * 14 13 11 41 41 H 1.09008 * 109.47452 * 178.35465 * 14 13 11 42 42 H 1.09001 * 109.59772 * 171.34824 * 15 14 13 43 43 H 1.08994 * 109.59807 * 291.81996 * 15 14 13 44 44 H 0.97001 * 120.00173 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.52388 * 245.60464 * 27 8 6 46 46 H 1.08998 * 109.52219 * 5.72130 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5372 -0.0025 5 6 4.9211 1.3000 -0.0057 6 6 5.7663 0.8573 1.1608 7 8 5.3540 0.0058 1.9198 8 7 6.9807 1.4068 1.3600 9 6 7.4988 2.4348 0.4460 10 6 8.8647 1.9868 -0.0700 11 6 9.7845 1.6715 1.1049 12 1 10.7510 1.3461 0.7200 13 8 9.9881 2.8323 1.9095 14 6 10.9372 2.6468 2.9638 15 6 10.4347 1.5570 3.9167 16 7 10.0840 0.3654 3.1275 17 6 10.5678 -0.8724 3.4577 18 1 10.6717 -1.6321 2.6971 19 6 10.9250 -1.1506 4.7699 20 7 10.5025 -0.3746 5.7456 21 14 12.0049 -2.6263 5.1512 22 1 13.4323 -2.2187 5.1110 23 1 11.6759 -3.1443 6.5035 24 1 11.7651 -3.6891 4.1422 25 6 9.1910 0.5532 1.9675 26 1 9.1014 -0.3649 1.3869 27 6 7.8169 0.9879 2.4914 28 7 3.4763 -0.7564 0.0046 29 8 2.3095 -1.0736 0.0059 30 1 -0.3634 -1.0276 0.0053 31 1 -0.3633 0.5185 0.8873 32 1 -0.3633 0.5093 -0.8927 33 1 2.0345 2.1270 -0.0005 34 1 4.7163 2.3672 0.0784 35 1 5.4546 1.1046 -0.9359 36 1 6.8141 2.5575 -0.3931 37 1 7.6034 3.3798 0.9788 38 1 9.3047 2.7822 -0.6714 39 1 8.7416 1.0944 -0.6835 40 1 11.8959 2.3461 2.5411 41 1 11.0587 3.5811 3.5120 42 1 11.2192 1.3051 4.6303 43 1 9.5538 1.9151 4.4495 44 1 10.7523 -0.5688 6.6625 45 1 7.9376 1.8213 3.1834 46 1 7.3415 0.1530 3.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074197045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:45 Heat of formation + Delta-G solvation = 16.767679 kcal Electronic energy + Delta-G solvation = -29973.977074 eV Core-core repulsion = 25868.250441 eV Total energy + Delta-G solvation = -4105.726633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.93361 -40.12832 -38.59935 -35.78992 -34.74588 -34.57806 -33.48400 -31.87094 -31.51800 -30.00109 -29.06223 -27.93021 -27.26599 -24.79685 -23.87558 -23.14555 -22.76849 -21.55255 -20.79518 -19.07928 -18.24563 -17.72743 -17.31991 -16.97446 -16.67508 -15.63541 -15.54813 -15.40432 -15.08364 -14.61126 -14.45008 -14.36358 -13.93804 -13.77183 -13.53707 -13.41270 -13.12983 -13.02203 -12.81753 -12.62160 -12.50582 -12.29396 -12.14160 -11.94748 -11.35691 -11.11087 -11.06455 -10.96165 -10.76577 -10.60720 -10.23606 -10.21510 -10.17999 -9.99391 -9.63956 -9.45351 -9.34713 -9.00517 -8.59465 -8.23133 -6.76633 -5.85902 -3.29664 1.45521 2.16650 2.87601 3.06397 3.28680 3.36021 3.42513 3.44132 4.06672 4.27518 4.33422 4.42019 4.70410 4.87232 4.95214 4.98948 5.03314 5.10462 5.14164 5.25623 5.29282 5.33453 5.35403 5.42427 5.50894 5.62870 5.71421 5.76068 5.77135 5.94628 6.00654 6.04588 6.08090 6.14557 6.29631 6.34650 6.42406 6.67810 6.76234 6.95785 7.08059 7.47347 7.71538 7.73783 7.87298 8.30029 8.32182 8.47406 9.08925 9.70336 10.27476 11.21711 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003110 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.163928 B = 9000.542568 C =10307.252166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.230 4.230 4 C 0.029 3.971 5 C -0.061 4.061 6 C 0.511 3.489 7 O -0.528 6.528 8 N -0.606 5.606 9 C 0.111 3.889 10 C -0.124 4.124 11 C 0.081 3.919 12 H 0.052 0.948 13 O -0.388 6.388 14 C 0.040 3.960 15 C 0.137 3.863 16 N -0.584 5.584 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.135 3.865 26 H 0.074 0.926 27 C 0.107 3.893 28 N -0.334 5.334 29 O 0.104 5.896 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.028 0.972 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 9.284 -14.647 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.251 4.251 4 C -0.131 4.131 5 C -0.102 4.102 6 C 0.297 3.703 7 O -0.404 6.404 8 N -0.341 5.341 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.021 3.979 12 H 0.070 0.930 13 O -0.307 6.307 14 C -0.038 4.038 15 C 0.012 3.988 16 N -0.306 5.306 17 C -0.384 4.384 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.026 3.974 26 H 0.092 0.908 27 C -0.017 4.017 28 N -0.034 5.034 29 O 0.035 5.965 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.187 0.813 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.290 7.909 -14.036 20.885 hybrid contribution 0.486 -0.061 0.469 0.678 sum -12.804 7.848 -13.567 20.239 Atomic orbital electron populations 1.20304 0.84227 1.04588 1.03858 1.24467 0.96370 0.86413 1.03280 1.22311 0.91150 1.00892 1.10767 1.22831 0.96024 0.90137 1.04089 1.20050 0.90434 1.00171 0.99534 1.20213 0.81767 0.82123 0.86244 1.90757 1.71305 1.31384 1.46921 1.48269 1.16588 1.39964 1.29243 1.21583 0.94970 0.91703 0.92908 1.21729 0.95136 1.02254 0.97104 1.22234 0.97661 0.87360 0.90645 0.93020 1.87705 1.63401 1.34696 1.44930 1.23331 0.91121 1.00042 0.89323 1.21473 0.99970 0.84875 0.92481 1.44296 1.51448 1.04425 1.30442 1.19191 1.36739 0.90247 0.92255 0.91292 1.25062 1.00609 0.98274 0.95463 1.70024 1.45374 1.40007 0.98999 0.86216 0.80399 0.82242 0.77502 1.21367 1.21644 1.20334 1.21583 0.88896 0.96069 0.90810 0.90798 1.22330 0.90973 1.00949 0.87412 1.73916 0.96187 1.16246 1.17094 1.84876 1.11416 1.33194 1.67063 0.89964 0.89328 0.89352 0.81270 0.86914 0.87185 0.90447 0.90464 0.90301 0.90474 0.94095 0.90120 0.88580 0.95346 0.93438 0.91372 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.45 36.01 0.38 -0.02 16 2 C -0.04 -0.43 7.49 -35.30 -0.26 -0.70 16 3 C -0.23 -2.43 11.05 -39.38 -0.44 -2.87 16 4 C 0.03 0.40 6.10 -82.10 -0.50 -0.10 16 5 C -0.06 -0.73 4.65 -29.03 -0.13 -0.87 16 6 C 0.51 8.77 7.69 -10.98 -0.08 8.68 16 7 O -0.53 -11.77 15.01 5.55 0.08 -11.69 16 8 N -0.61 -10.04 2.97 -173.02 -0.51 -10.55 16 9 C 0.11 1.37 6.15 -3.92 -0.02 1.35 16 10 C -0.12 -1.59 5.80 -27.13 -0.16 -1.75 16 11 C 0.08 1.41 2.73 -26.88 -0.07 1.33 16 12 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 13 O -0.39 -7.09 9.59 -35.23 -0.34 -7.43 16 14 C 0.04 0.75 6.97 37.28 0.26 1.01 16 15 C 0.14 3.21 4.93 -3.56 -0.02 3.20 16 16 N -0.58 -14.44 2.71 -163.85 -0.44 -14.89 16 17 C -0.26 -6.98 9.71 -15.06 -0.15 -7.13 16 18 H 0.07 1.88 7.88 -52.49 -0.41 1.46 16 19 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 20 N -0.90 -25.93 11.14 55.49 0.62 -25.32 16 21 Si 0.91 21.84 29.59 -169.99 -5.03 16.82 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.14 2.84 3.00 -67.05 -0.20 2.64 16 26 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 27 C 0.11 2.23 5.63 -3.71 -0.02 2.21 16 28 N -0.33 -5.51 11.46 33.42 0.38 -5.13 16 29 O 0.10 1.47 11.20 17.19 0.19 1.66 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.11 0.95 7.94 -51.93 -0.41 0.54 16 35 H 0.11 1.08 7.70 -51.93 -0.40 0.68 16 36 H 0.08 0.66 5.95 -51.93 -0.31 0.35 16 37 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 41 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 42 H 0.10 2.48 6.12 -51.93 -0.32 2.16 16 43 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.07 1.50 6.56 -51.93 -0.34 1.16 16 46 H 0.09 2.18 7.00 -51.93 -0.36 1.82 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -35.15 366.06 -7.74 -42.89 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.70 Total: 1.08 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.51 Total: 7.04 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.04 Total: -55.88 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.15 -7.74 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074197045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.653 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds