Wall clock time and date at job start Tue Mar 31 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35451 * 126.77360 * 2 1 4 4 C 1.41385 * 103.98075 * 180.10247 * 3 2 1 5 5 C 1.50701 * 126.79946 * 179.89540 * 4 3 2 6 6 C 1.50700 * 109.47076 * 124.70584 * 5 4 3 7 7 O 1.21283 * 120.00165 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46989 * 120.71912 * 359.72653 * 8 6 5 10 10 C 1.52723 * 108.67652 * 234.51609 * 9 8 6 11 11 C 1.52506 * 109.86257 * 305.69247 * 10 9 8 12 12 H 1.09001 * 108.93223 * 179.54288 * 11 10 9 13 13 O 1.42695 * 110.62330 * 298.58414 * 11 10 9 14 14 C 1.43073 * 113.86963 * 185.35762 * 13 11 10 15 15 C 1.53232 * 109.44654 * 298.34643 * 14 13 11 16 16 N 1.47167 * 108.69726 * 51.58544 * 15 14 13 17 17 C 1.36936 * 121.22540 * 129.08251 * 16 15 14 18 18 H 1.07997 * 120.00151 * 206.09139 * 17 16 15 19 19 C 1.38815 * 119.99960 * 26.08849 * 17 16 15 20 20 N 1.31622 * 119.99685 * 16.91466 * 19 17 16 21 21 Si 1.86800 * 120.00265 * 196.91140 * 19 17 16 22 22 H 1.48494 * 109.47061 * 89.99998 * 21 19 17 23 23 H 1.48496 * 109.47084 * 210.00361 * 21 19 17 24 24 H 1.48498 * 109.46981 * 330.00311 * 21 19 17 25 25 C 1.47596 * 117.55529 * 309.05725 * 16 15 14 26 26 H 1.08997 * 111.17082 * 172.79522 * 25 16 15 27 27 C 1.46787 * 120.72234 * 179.97438 * 8 6 5 28 28 N 1.30180 * 106.39517 * 359.62346 * 4 3 2 29 29 O 1.20918 * 111.60335 * 0.24979 * 28 4 3 30 30 H 1.08997 * 109.47364 * 180.29511 * 1 2 3 31 31 H 1.09000 * 109.46744 * 300.29794 * 1 2 3 32 32 H 1.09005 * 109.46785 * 60.29270 * 1 2 3 33 33 H 1.07993 * 128.01111 * 359.96941 * 3 2 1 34 34 H 1.08994 * 109.47390 * 4.70667 * 5 4 3 35 35 H 1.08998 * 109.46801 * 244.70441 * 5 4 3 36 36 H 1.09003 * 109.63554 * 354.23729 * 9 8 6 37 37 H 1.08995 * 109.64575 * 114.86666 * 9 8 6 38 38 H 1.08996 * 109.48070 * 185.51096 * 10 9 8 39 39 H 1.09000 * 109.22594 * 65.71689 * 10 9 8 40 40 H 1.09000 * 109.47553 * 58.34217 * 14 13 11 41 41 H 1.09008 * 109.47452 * 178.35465 * 14 13 11 42 42 H 1.09001 * 109.59772 * 171.34824 * 15 14 13 43 43 H 1.08994 * 109.59807 * 291.81996 * 15 14 13 44 44 H 0.97001 * 120.00173 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.52388 * 245.60464 * 27 8 6 46 46 H 1.08998 * 109.52219 * 5.72130 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5372 -0.0025 5 6 4.9211 1.3000 -0.0057 6 6 5.7663 0.8573 1.1608 7 8 5.3540 0.0058 1.9198 8 7 6.9807 1.4068 1.3600 9 6 7.4988 2.4348 0.4460 10 6 8.8647 1.9868 -0.0700 11 6 9.7845 1.6715 1.1049 12 1 10.7510 1.3461 0.7200 13 8 9.9881 2.8323 1.9095 14 6 10.9372 2.6468 2.9638 15 6 10.4347 1.5570 3.9167 16 7 10.0840 0.3654 3.1275 17 6 10.5678 -0.8724 3.4577 18 1 10.6717 -1.6321 2.6971 19 6 10.9250 -1.1506 4.7699 20 7 10.5025 -0.3746 5.7456 21 14 12.0049 -2.6263 5.1512 22 1 13.4323 -2.2187 5.1110 23 1 11.6759 -3.1443 6.5035 24 1 11.7651 -3.6891 4.1422 25 6 9.1910 0.5532 1.9675 26 1 9.1014 -0.3649 1.3869 27 6 7.8169 0.9879 2.4914 28 7 3.4763 -0.7564 0.0046 29 8 2.3095 -1.0736 0.0059 30 1 -0.3634 -1.0276 0.0053 31 1 -0.3633 0.5185 0.8873 32 1 -0.3633 0.5093 -0.8927 33 1 2.0345 2.1270 -0.0005 34 1 4.7163 2.3672 0.0784 35 1 5.4546 1.1046 -0.9359 36 1 6.8141 2.5575 -0.3931 37 1 7.6034 3.3798 0.9788 38 1 9.3047 2.7822 -0.6714 39 1 8.7416 1.0944 -0.6835 40 1 11.8959 2.3461 2.5411 41 1 11.0587 3.5811 3.5120 42 1 11.2192 1.3051 4.6303 43 1 9.5538 1.9151 4.4495 44 1 10.7523 -0.5688 6.6625 45 1 7.9376 1.8213 3.1834 46 1 7.3415 0.1530 3.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074197045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:44 Heat of formation + Delta-G solvation = -8.191529 kcal Electronic energy + Delta-G solvation = -29975.059387 eV Core-core repulsion = 25868.250441 eV Total energy + Delta-G solvation = -4106.808945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.87267 -41.55372 -40.09600 -37.20546 -36.48034 -35.64180 -34.24154 -33.57296 -33.10370 -31.42849 -30.36467 -29.06856 -28.55054 -26.17900 -25.64896 -24.47973 -24.01037 -22.96522 -21.99722 -20.45104 -19.59013 -18.95335 -18.72834 -18.29473 -17.87686 -17.14906 -17.02030 -16.88967 -16.66150 -16.19856 -15.78021 -15.62221 -15.30334 -14.89601 -14.78658 -14.50476 -14.33216 -14.04076 -13.98458 -13.90066 -13.73894 -13.40308 -13.31392 -13.12375 -13.08840 -12.87423 -12.63913 -12.44578 -12.26161 -12.13521 -11.98854 -11.88630 -11.69821 -11.24157 -11.20165 -10.81431 -10.74199 -10.54112 -10.18071 -9.71818 -8.75099 -7.96993 -5.44309 0.62555 1.24768 1.40565 1.41447 1.50821 1.58159 2.00942 2.35373 2.42967 2.87780 3.17029 3.17050 3.39809 3.48873 3.68748 3.88847 3.99585 4.12070 4.16936 4.19108 4.21462 4.26998 4.35229 4.41899 4.50520 4.52182 4.57012 4.64483 4.69028 4.78065 4.80752 4.85088 4.88485 4.94216 4.97563 5.03673 5.08343 5.21682 5.29947 5.32112 5.45242 5.53860 5.56527 6.22275 6.33158 6.45141 7.00234 7.15892 7.43337 7.67114 8.20996 9.07745 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003110 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.163928 B = 9000.542568 C =10307.252166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.042 4.042 3 C -0.231 4.231 4 C 0.010 3.990 5 C -0.050 4.050 6 C 0.503 3.497 7 O -0.592 6.592 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.117 4.117 11 C 0.085 3.915 12 H 0.049 0.951 13 O -0.380 6.380 14 C 0.053 3.947 15 C 0.144 3.856 16 N -0.603 5.603 17 C -0.268 4.268 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.132 3.868 26 H 0.057 0.943 27 C 0.126 3.874 28 N -0.391 5.391 29 O 0.080 5.920 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.208 0.792 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.000 1.000 44 H 0.252 0.748 45 H 0.051 0.949 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 11.994 -17.881 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.252 4.252 4 C -0.148 4.148 5 C -0.090 4.090 6 C 0.292 3.708 7 O -0.473 6.473 8 N -0.337 5.337 9 C -0.015 4.015 10 C -0.156 4.156 11 C 0.026 3.974 12 H 0.067 0.933 13 O -0.299 6.299 14 C -0.025 4.025 15 C 0.019 3.981 16 N -0.326 5.326 17 C -0.398 4.398 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.024 3.976 26 H 0.075 0.925 27 C 0.001 3.999 28 N -0.096 5.096 29 O 0.013 5.987 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.225 0.775 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.205 10.659 -17.337 24.818 hybrid contribution 0.654 -0.917 1.475 1.856 sum -13.550 9.742 -15.861 23.024 Atomic orbital electron populations 1.20560 0.80809 1.05597 1.05807 1.25430 0.98221 0.85523 1.01339 1.22773 0.89514 1.02620 1.10257 1.23398 0.98018 0.89882 1.03550 1.20209 0.88852 1.02264 0.97629 1.21260 0.81776 0.80894 0.86916 1.90735 1.72676 1.34281 1.49561 1.48313 1.16165 1.40714 1.28502 1.22002 0.95797 0.90081 0.93572 1.21800 0.94306 1.04254 0.95198 1.22283 0.98445 0.85672 0.91015 0.93344 1.87723 1.63102 1.34617 1.44449 1.23152 0.91053 0.99495 0.88776 1.21316 0.97882 0.85849 0.93055 1.44534 1.52599 1.04094 1.31384 1.19453 1.36625 0.91341 0.92352 0.91841 1.25818 1.02043 1.01103 0.95293 1.70179 1.46715 1.41741 0.99012 0.85219 0.78955 0.79188 0.76794 1.20299 1.22128 1.19822 1.21733 0.88698 0.97176 0.90021 0.92516 1.21679 0.91344 0.98213 0.88683 1.73911 0.97560 1.18283 1.19824 1.84802 1.11362 1.34823 1.67702 0.89524 0.87806 0.86620 0.77549 0.82221 0.84183 0.85063 0.89987 0.86437 0.89317 0.93564 0.87179 0.91473 0.98160 0.93858 0.93093 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.16 16 2 C -0.04 -0.80 7.49 25.04 0.19 -0.62 16 3 C -0.23 -4.27 11.05 22.40 0.25 -4.02 16 4 C 0.01 0.27 6.10 43.58 0.27 0.54 16 5 C -0.05 -1.03 4.65 29.10 0.14 -0.90 16 6 C 0.50 17.05 7.69 87.66 0.67 17.72 16 7 O -0.59 -27.85 15.01 -3.04 -0.05 -27.89 16 8 N -0.60 -19.49 2.97 -819.70 -2.43 -21.92 16 9 C 0.11 2.16 6.15 86.19 0.53 2.69 16 10 C -0.12 -2.53 5.80 30.34 0.18 -2.36 16 11 C 0.09 2.83 2.73 30.50 0.08 2.92 16 12 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 13 O -0.38 -13.10 9.59 -148.98 -1.43 -14.53 16 14 C 0.05 1.97 6.97 72.06 0.50 2.47 16 15 C 0.14 7.03 4.93 86.33 0.43 7.46 16 16 N -0.60 -31.23 2.71 -672.30 -1.82 -33.05 16 17 C -0.27 -15.35 9.71 84.03 0.82 -14.53 16 18 H 0.06 3.61 7.88 -2.91 -0.02 3.59 16 19 C -0.05 -2.68 4.96 84.86 0.42 -2.26 16 20 N -0.93 -56.39 11.14 21.65 0.24 -56.15 16 21 Si 0.97 46.44 29.59 68.60 2.03 48.47 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.13 5.71 3.00 44.96 0.14 5.85 16 26 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 27 C 0.13 5.54 5.63 86.44 0.49 6.03 16 28 N -0.39 -13.17 11.46 -49.55 -0.57 -13.74 16 29 O 0.08 2.29 11.20 71.68 0.80 3.09 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.21 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.16 1.77 7.94 -2.39 -0.02 1.75 16 35 H 0.14 2.07 7.70 -2.39 -0.02 2.05 16 36 H 0.13 1.35 5.95 -2.39 -0.01 1.33 16 37 H 0.08 1.68 7.94 -2.39 -0.02 1.66 16 38 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 41 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.07 3.64 6.12 -2.39 -0.01 3.63 16 43 H 0.00 0.02 7.17 -2.39 -0.02 0.00 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.05 2.38 6.56 -2.39 -0.02 2.36 16 46 H 0.03 1.81 7.00 -2.39 -0.02 1.80 16 Total: -1.00 -87.13 366.06 3.60 -83.53 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.04 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.83 Total: 21.15 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -4.58 Total: -124.86 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.67 Total: -39.33 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -87.13 3.60 -83.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074197045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.338 kcal (2) G-P(sol) polarization free energy of solvation -87.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds