Wall clock time and date at job start Tue Mar 31 2020 19:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99771 * 2 1 4 4 H 1.09002 * 110.64068 * 26.85528 * 3 2 1 5 5 C 1.54335 * 110.99865 * 263.77707 * 3 2 1 6 6 N 1.47023 * 107.26672 * 219.59980 * 5 3 2 7 7 C 1.36929 * 125.65071 * 178.85216 * 6 5 3 8 8 H 1.07997 * 120.00517 * 185.64869 * 7 6 5 9 9 C 1.38814 * 119.99900 * 5.64783 * 7 6 5 10 10 N 1.31617 * 119.99894 * 6.58264 * 9 7 6 11 11 Si 1.86801 * 120.00013 * 186.58791 * 9 7 6 12 12 H 1.48508 * 109.46756 * 265.00528 * 11 9 7 13 13 H 1.48495 * 109.47206 * 145.00711 * 11 9 7 14 14 H 1.48504 * 109.47238 * 25.00083 * 11 9 7 15 15 C 1.47426 * 108.70119 * 358.58579 * 6 5 3 16 16 C 1.54912 * 104.83245 * 24.35667 * 15 6 5 17 17 H 1.08997 * 111.00291 * 81.06418 * 16 15 6 18 18 N 1.46494 * 111.00570 * 204.91410 * 16 15 6 19 19 C 1.34778 * 120.00352 * 273.54781 * 18 16 15 20 20 O 1.21622 * 119.99657 * 359.97438 * 19 18 16 21 21 C 1.47291 * 120.00305 * 179.97438 * 19 18 16 22 22 C 1.37985 * 120.88036 * 359.71573 * 21 19 18 23 23 N 1.34341 * 120.37095 * 179.73816 * 22 21 19 24 24 C 1.46495 * 118.81059 * 180.28377 * 23 22 21 25 25 C 1.35589 * 122.39084 * 0.58515 * 23 22 21 26 26 C 1.50691 * 119.10188 * 179.70450 * 25 23 22 27 27 C 1.34868 * 121.79472 * 359.68054 * 25 23 22 28 28 C 1.41665 * 119.34233 * 0.02562 * 27 25 23 29 29 O 1.22086 * 121.07014 * 180.02562 * 28 27 25 30 30 H 1.09001 * 109.46836 * 60.00394 * 1 2 3 31 31 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47310 * 300.00402 * 1 2 3 33 33 H 1.09002 * 109.98831 * 100.12570 * 5 3 2 34 34 H 1.08993 * 109.78039 * 338.96019 * 5 3 2 35 35 H 0.97003 * 119.99820 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.36575 * 143.19163 * 15 6 5 37 37 H 1.09001 * 110.36701 * 265.51807 * 15 6 5 38 38 H 0.97002 * 120.00148 * 93.54070 * 18 16 15 39 39 H 1.08004 * 119.81540 * 0.02562 * 22 21 19 40 40 H 1.09000 * 109.47763 * 264.33315 * 24 23 22 41 41 H 1.09005 * 109.46559 * 24.33595 * 24 23 22 42 42 H 1.09000 * 109.47203 * 144.32608 * 24 23 22 43 43 H 1.09001 * 109.47385 * 275.94015 * 26 25 23 44 44 H 1.09001 * 109.47631 * 35.94654 * 26 25 23 45 45 H 1.09001 * 109.47168 * 155.94315 * 26 25 23 46 46 H 1.07999 * 120.33025 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4608 5 6 2.3778 1.7472 -1.4324 6 7 3.6669 2.4501 -1.3550 7 6 4.3516 2.9804 -2.4156 8 1 5.3363 3.3986 -2.2679 9 6 3.7801 2.9805 -3.6806 10 7 2.5329 2.5910 -3.8393 11 14 4.7812 3.5332 -5.1577 12 1 4.5165 4.9698 -5.4254 13 1 4.3962 2.7293 -6.3454 14 1 6.2265 3.3402 -4.8765 15 6 4.0970 2.4949 0.0544 16 6 3.3816 1.2959 0.7256 17 1 3.9172 0.3657 0.5365 18 7 3.2163 1.5212 2.1637 19 6 4.2041 1.1842 3.0166 20 8 5.2324 0.6927 2.5923 21 6 4.0381 1.4112 4.4624 22 6 2.8814 1.9730 4.9629 23 7 2.7388 2.1706 6.2840 24 6 1.4940 2.7637 6.7788 25 6 3.7075 1.8466 7.1757 26 6 3.4715 2.1067 8.6411 27 6 4.8763 1.2975 6.7868 28 6 5.1036 1.0508 5.4104 29 8 6.1498 0.5546 5.0236 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6128 2.4180 -1.8233 34 1 2.4706 0.8724 -2.0758 35 1 2.1337 2.5908 -4.7233 36 1 5.1785 2.3790 0.1248 37 1 3.7839 3.4309 0.5170 38 1 2.3960 1.9129 2.5022 39 1 2.0844 2.2511 4.2892 40 1 1.6270 3.8387 6.9008 41 1 0.6928 2.5755 6.0641 42 1 1.2359 2.3181 7.7395 43 1 3.7230 3.1420 8.8715 44 1 2.4230 1.9261 8.8780 45 1 4.0979 1.4401 9.2339 46 1 5.6316 1.0482 7.5174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081823489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:19 Heat of formation + Delta-G solvation = -34.152701 kcal Electronic energy + Delta-G solvation = -29294.050254 eV Core-core repulsion = 25186.115548 eV Total energy + Delta-G solvation = -4107.934706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44963 -39.43798 -38.23949 -37.55271 -35.83185 -34.14054 -33.60749 -32.82707 -31.58503 -29.08158 -28.36991 -27.26344 -26.85045 -26.11787 -24.59602 -24.03381 -22.07642 -20.86583 -20.46853 -19.96125 -18.34896 -17.79686 -16.97099 -16.45912 -16.41293 -16.28604 -15.91515 -15.39927 -14.74813 -14.59209 -14.54827 -14.38375 -14.20351 -13.94140 -13.82305 -13.55098 -13.46206 -13.28959 -13.16664 -12.80948 -12.64054 -12.31662 -12.24098 -12.14317 -11.84648 -11.53198 -11.18670 -10.99141 -10.76759 -10.71883 -10.13891 -9.93579 -9.82069 -9.74392 -9.73680 -9.23847 -9.00268 -8.69193 -8.54347 -8.11523 -6.83159 -5.69278 -3.04773 0.67859 1.08740 2.03043 3.12120 3.32362 3.43911 3.49652 3.53051 3.72882 3.87904 4.05131 4.13528 4.20205 4.37575 4.46980 4.55535 4.70681 4.79326 4.84376 4.88525 5.08559 5.20185 5.25233 5.38748 5.45615 5.50358 5.54194 5.56085 5.66477 5.75093 5.88040 5.90712 6.08055 6.18222 6.21518 6.29318 6.50244 6.62596 6.75599 6.94635 7.25737 7.54956 7.74829 7.80760 7.85233 8.12148 8.24598 8.63598 9.21480 9.82066 10.45642 11.41424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002797 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.477310 B =10008.301614 C =10784.741362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.057 3.943 4 H 0.062 0.938 5 C 0.162 3.838 6 N -0.599 5.599 7 C -0.225 4.225 8 H 0.081 0.919 9 C -0.009 4.009 10 N -0.923 5.923 11 Si 0.913 3.087 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.105 0.895 18 N -0.721 5.721 19 C 0.570 3.430 20 O -0.505 6.505 21 C -0.289 4.289 22 C 0.169 3.831 23 N -0.473 5.473 24 C 0.049 3.951 25 C 0.153 3.847 26 C -0.126 4.126 27 C -0.268 4.268 28 C 0.406 3.594 29 O -0.476 6.476 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.022 0.978 38 H 0.386 0.614 39 H 0.166 0.834 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 1.524 27.593 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.002 4.002 4 H 0.080 0.920 5 C 0.036 3.964 6 N -0.327 5.327 7 C -0.353 4.353 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.744 3.256 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.123 0.877 18 N -0.374 5.374 19 C 0.356 3.644 20 O -0.378 6.378 21 C -0.300 4.300 22 C 0.039 3.961 23 N -0.160 5.160 24 C -0.093 4.093 25 C 0.047 3.953 26 C -0.183 4.183 27 C -0.292 4.292 28 C 0.291 3.709 29 O -0.356 6.356 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.220 0.780 39 H 0.183 0.817 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.528 0.809 26.920 28.567 hybrid contribution -0.494 0.843 -0.668 1.184 sum -10.021 1.652 26.251 28.148 Atomic orbital electron populations 1.22705 0.81858 1.02017 0.99663 1.87929 1.18970 1.27654 1.95030 1.23835 0.92917 0.83863 0.99547 0.92012 1.21588 0.89034 0.96775 0.88974 1.44259 1.21689 1.65949 1.00806 1.19096 0.98183 1.32241 0.85793 0.90162 1.24806 0.96365 1.01598 0.97691 1.69925 1.11787 1.53616 1.21740 0.86070 0.79372 0.77811 0.82369 1.21688 1.21625 1.20495 1.21838 0.98117 0.93731 0.86059 1.22337 0.96214 1.00963 0.77333 0.87746 1.45856 1.18745 1.65442 1.07345 1.17456 0.83753 0.78793 0.84386 1.90878 1.27151 1.41994 1.77810 1.22635 0.97854 1.13451 0.96056 1.22196 0.97783 0.92461 0.83710 1.42517 1.16091 1.52376 1.05050 1.22534 0.84262 0.99874 1.02585 1.20242 0.88668 0.94598 0.91787 1.21176 1.03887 1.04225 0.89056 1.22289 0.98097 1.10044 0.98777 1.18164 0.86559 0.78655 0.87495 1.90840 1.26180 1.37235 1.81377 0.93603 0.90271 0.94995 0.91864 0.93400 0.93761 0.92921 0.96053 0.78027 0.81704 0.89954 0.88818 0.88849 0.89368 0.90182 0.88908 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.95 10.45 -35.23 -0.37 -7.31 16 3 C 0.06 1.09 3.05 -24.89 -0.08 1.01 16 4 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 5 C 0.16 3.98 5.20 -3.06 -0.02 3.96 16 6 N -0.60 -15.87 3.39 -170.07 -0.58 -16.45 16 7 C -0.22 -6.48 10.26 -15.06 -0.15 -6.63 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 9 C -0.01 -0.25 5.46 -17.43 -0.10 -0.34 16 10 N -0.92 -27.28 10.44 55.49 0.58 -26.70 16 11 Si 0.91 22.66 29.56 -169.99 -5.02 17.63 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.13 2.93 6.93 -2.53 -0.02 2.91 16 16 C 0.14 2.70 3.04 -65.78 -0.20 2.50 16 17 H 0.10 2.38 7.73 -51.93 -0.40 1.98 16 18 N -0.72 -11.26 5.18 -52.85 -0.27 -11.53 16 19 C 0.57 10.29 7.77 -12.58 -0.10 10.19 16 20 O -0.50 -11.94 15.32 -14.76 -0.23 -12.17 16 21 C -0.29 -4.08 6.05 -102.72 -0.62 -4.70 16 22 C 0.17 1.37 9.79 -16.55 -0.16 1.21 16 23 N -0.47 -2.63 2.97 -119.75 -0.36 -2.99 16 24 C 0.05 0.04 9.98 59.84 0.60 0.64 16 25 C 0.15 0.99 6.64 -82.13 -0.54 0.45 16 26 C -0.13 -0.28 9.34 36.00 0.34 0.06 16 27 C -0.27 -2.83 9.57 -39.47 -0.38 -3.20 16 28 C 0.41 6.51 6.96 -34.68 -0.24 6.27 16 29 O -0.48 -10.18 16.41 -15.17 -0.25 -10.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.06 1.67 7.04 -51.93 -0.37 1.31 16 34 H 0.05 1.33 7.78 -51.93 -0.40 0.93 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.39 4.32 6.59 -40.82 -0.27 4.05 16 39 H 0.17 0.77 6.29 -52.48 -0.33 0.44 16 40 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.09 -0.05 7.86 -51.93 -0.41 -0.45 16 42 H 0.09 -0.08 5.94 -51.93 -0.31 -0.39 16 43 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.08 0.02 6.00 -51.93 -0.31 -0.29 16 45 H 0.09 0.17 7.97 -51.93 -0.41 -0.24 16 46 H 0.15 1.37 8.01 -52.49 -0.42 0.95 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -42.02 377.94 -7.91 -49.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.54 Total: -1.56 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -0.58 Total: 15.89 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.63 Total: -57.67 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.84 Total: -29.91 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -42.02 -7.91 -49.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081823489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.774 kcal (2) G-P(sol) polarization free energy of solvation -42.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds