Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99771 * 2 1 4 4 H 1.09002 * 110.64068 * 26.85528 * 3 2 1 5 5 C 1.54335 * 110.99865 * 263.77707 * 3 2 1 6 6 N 1.47023 * 107.26672 * 219.59980 * 5 3 2 7 7 C 1.36929 * 125.65071 * 178.85216 * 6 5 3 8 8 H 1.07997 * 120.00517 * 185.64869 * 7 6 5 9 9 C 1.38814 * 119.99900 * 5.64783 * 7 6 5 10 10 N 1.31617 * 119.99894 * 6.58264 * 9 7 6 11 11 Si 1.86801 * 120.00013 * 186.58791 * 9 7 6 12 12 H 1.48508 * 109.46756 * 265.00528 * 11 9 7 13 13 H 1.48495 * 109.47206 * 145.00711 * 11 9 7 14 14 H 1.48504 * 109.47238 * 25.00083 * 11 9 7 15 15 C 1.47426 * 108.70119 * 358.58579 * 6 5 3 16 16 C 1.54912 * 104.83245 * 24.35667 * 15 6 5 17 17 H 1.08997 * 111.00291 * 81.06418 * 16 15 6 18 18 N 1.46494 * 111.00570 * 204.91410 * 16 15 6 19 19 C 1.34778 * 120.00352 * 273.54781 * 18 16 15 20 20 O 1.21622 * 119.99657 * 359.97438 * 19 18 16 21 21 C 1.47291 * 120.00305 * 179.97438 * 19 18 16 22 22 C 1.37985 * 120.88036 * 359.71573 * 21 19 18 23 23 N 1.34341 * 120.37095 * 179.73816 * 22 21 19 24 24 C 1.46495 * 118.81059 * 180.28377 * 23 22 21 25 25 C 1.35589 * 122.39084 * 0.58515 * 23 22 21 26 26 C 1.50691 * 119.10188 * 179.70450 * 25 23 22 27 27 C 1.34868 * 121.79472 * 359.68054 * 25 23 22 28 28 C 1.41665 * 119.34233 * 0.02562 * 27 25 23 29 29 O 1.22086 * 121.07014 * 180.02562 * 28 27 25 30 30 H 1.09001 * 109.46836 * 60.00394 * 1 2 3 31 31 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47310 * 300.00402 * 1 2 3 33 33 H 1.09002 * 109.98831 * 100.12570 * 5 3 2 34 34 H 1.08993 * 109.78039 * 338.96019 * 5 3 2 35 35 H 0.97003 * 119.99820 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.36575 * 143.19163 * 15 6 5 37 37 H 1.09001 * 110.36701 * 265.51807 * 15 6 5 38 38 H 0.97002 * 120.00148 * 93.54070 * 18 16 15 39 39 H 1.08004 * 119.81540 * 0.02562 * 22 21 19 40 40 H 1.09000 * 109.47763 * 264.33315 * 24 23 22 41 41 H 1.09005 * 109.46559 * 24.33595 * 24 23 22 42 42 H 1.09000 * 109.47203 * 144.32608 * 24 23 22 43 43 H 1.09001 * 109.47385 * 275.94015 * 26 25 23 44 44 H 1.09001 * 109.47631 * 35.94654 * 26 25 23 45 45 H 1.09001 * 109.47168 * 155.94315 * 26 25 23 46 46 H 1.07999 * 120.33025 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4608 5 6 2.3778 1.7472 -1.4324 6 7 3.6669 2.4501 -1.3550 7 6 4.3516 2.9804 -2.4156 8 1 5.3363 3.3986 -2.2679 9 6 3.7801 2.9805 -3.6806 10 7 2.5329 2.5910 -3.8393 11 14 4.7812 3.5332 -5.1577 12 1 4.5165 4.9698 -5.4254 13 1 4.3962 2.7293 -6.3454 14 1 6.2265 3.3402 -4.8765 15 6 4.0970 2.4949 0.0544 16 6 3.3816 1.2959 0.7256 17 1 3.9172 0.3657 0.5365 18 7 3.2163 1.5212 2.1637 19 6 4.2041 1.1842 3.0166 20 8 5.2324 0.6927 2.5923 21 6 4.0381 1.4112 4.4624 22 6 2.8814 1.9730 4.9629 23 7 2.7388 2.1706 6.2840 24 6 1.4940 2.7637 6.7788 25 6 3.7075 1.8466 7.1757 26 6 3.4715 2.1067 8.6411 27 6 4.8763 1.2975 6.7868 28 6 5.1036 1.0508 5.4104 29 8 6.1498 0.5546 5.0236 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6128 2.4180 -1.8233 34 1 2.4706 0.8724 -2.0758 35 1 2.1337 2.5908 -4.7233 36 1 5.1785 2.3790 0.1248 37 1 3.7839 3.4309 0.5170 38 1 2.3960 1.9129 2.5022 39 1 2.0844 2.2511 4.2892 40 1 1.6270 3.8387 6.9008 41 1 0.6928 2.5755 6.0641 42 1 1.2359 2.3181 7.7395 43 1 3.7230 3.1420 8.8715 44 1 2.4230 1.9261 8.8780 45 1 4.0979 1.4401 9.2339 46 1 5.6316 1.0482 7.5174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081823489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = -67.652625 kcal Electronic energy + Delta-G solvation = -29295.502920 eV Core-core repulsion = 25186.115548 eV Total energy + Delta-G solvation = -4109.387372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22495 -40.85898 -39.60046 -38.78936 -37.48967 -35.66204 -34.48091 -33.86498 -33.24161 -30.64242 -29.47208 -28.38927 -27.64347 -27.48646 -26.10020 -25.15811 -23.20580 -22.31699 -21.93962 -21.52985 -19.51266 -18.90836 -18.51202 -17.80098 -17.28620 -17.18080 -16.95539 -16.82538 -16.36889 -15.86897 -15.78634 -15.76309 -15.54733 -15.08553 -14.90784 -14.78325 -14.38142 -14.22211 -14.02942 -13.82488 -13.80490 -13.61142 -13.30264 -13.24257 -12.96060 -12.77314 -12.64069 -12.59376 -12.48932 -12.30356 -12.10421 -11.88246 -11.62131 -11.22135 -10.79455 -10.61026 -10.48308 -10.30974 -10.11636 -9.05356 -8.96468 -7.88839 -5.27898 -0.19605 0.34676 1.43658 1.46589 1.48510 1.56181 1.89708 1.99404 2.45456 2.77728 2.80002 3.23825 3.28549 3.52081 3.59353 3.62234 3.79203 3.84665 3.91184 4.06051 4.23507 4.26119 4.38379 4.45620 4.47128 4.50322 4.61961 4.68413 4.74922 4.75340 4.82803 4.85463 4.89853 4.90983 4.97827 5.18242 5.28200 5.33362 5.41975 5.43701 5.63726 5.73340 5.81100 6.13057 6.33130 6.60390 7.03638 7.11950 7.35227 7.67756 8.30928 9.19540 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002797 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.477310 B =10008.301614 C =10784.741362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.084 3.916 4 H 0.108 0.892 5 C 0.170 3.830 6 N -0.620 5.620 7 C -0.250 4.250 8 H 0.076 0.924 9 C -0.059 4.059 10 N -0.945 5.945 11 Si 0.980 3.020 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.131 3.869 16 C 0.152 3.848 17 H 0.063 0.937 18 N -0.698 5.698 19 C 0.568 3.432 20 O -0.579 6.579 21 C -0.350 4.350 22 C 0.225 3.775 23 N -0.455 5.455 24 C 0.031 3.969 25 C 0.188 3.812 26 C -0.125 4.125 27 C -0.304 4.304 28 C 0.380 3.620 29 O -0.570 6.570 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.001 0.999 35 H 0.250 0.750 36 H 0.023 0.977 37 H 0.045 0.955 38 H 0.413 0.587 39 H 0.215 0.785 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 3.875 31.341 35.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.024 3.976 4 H 0.125 0.875 5 C 0.044 3.956 6 N -0.348 5.348 7 C -0.378 4.378 8 H 0.094 0.906 9 C -0.252 4.252 10 N -0.593 5.593 11 Si 0.807 3.193 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.201 1.201 15 C 0.005 3.995 16 C 0.045 3.955 17 H 0.082 0.918 18 N -0.352 5.352 19 C 0.358 3.642 20 O -0.458 6.458 21 C -0.361 4.361 22 C 0.090 3.910 23 N -0.138 5.138 24 C -0.107 4.107 25 C 0.080 3.920 26 C -0.182 4.182 27 C -0.327 4.327 28 C 0.273 3.727 29 O -0.459 6.459 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.252 0.748 39 H 0.231 0.769 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.115 0.885 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.344 3.214 30.774 34.104 hybrid contribution 0.717 0.197 -1.628 1.790 sum -13.627 3.411 29.145 32.354 Atomic orbital electron populations 1.23034 0.79028 1.03921 1.01144 1.87919 1.22083 1.26989 1.94918 1.23446 0.93148 0.85383 0.95576 0.87456 1.21385 0.87785 0.94278 0.92117 1.44509 1.22475 1.65932 1.01887 1.19400 0.98554 1.32690 0.87198 0.90600 1.25635 0.97520 1.01916 1.00151 1.70115 1.12942 1.54187 1.22026 0.85056 0.77947 0.77667 0.78597 1.20468 1.21639 1.20138 1.21899 0.96866 0.95898 0.84881 1.21761 0.96136 0.97800 0.79775 0.91844 1.45429 1.19531 1.65134 1.05067 1.18112 0.82732 0.77172 0.86204 1.90837 1.30217 1.45515 1.79267 1.22089 1.00806 1.19824 0.93386 1.22653 0.95815 0.87077 0.85408 1.43215 1.17365 1.49020 1.04156 1.23157 0.81826 1.01096 1.04625 1.20837 0.86747 0.90155 0.94242 1.21403 1.06286 1.05583 0.84905 1.22126 1.00830 1.13527 0.96189 1.19019 0.86023 0.77579 0.90083 1.90781 1.29521 1.42656 1.82956 0.94536 0.88361 0.90936 0.93832 0.98027 0.94036 0.95809 0.93734 0.74810 0.76893 0.87683 0.86191 0.86083 0.87155 0.86668 0.88482 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.85 113.37 1.23 1.83 16 2 O -0.40 -14.35 10.45 -148.98 -1.56 -15.91 16 3 C 0.08 3.11 3.05 31.79 0.10 3.21 16 4 H 0.11 3.04 7.68 -2.39 -0.02 3.02 16 5 C 0.17 8.64 5.20 86.73 0.45 9.09 16 6 N -0.62 -34.25 3.39 -691.97 -2.35 -36.59 16 7 C -0.25 -14.95 10.26 84.04 0.86 -14.09 16 8 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 9 C -0.06 -3.46 5.46 84.86 0.46 -3.00 16 10 N -0.94 -57.42 10.44 21.65 0.23 -57.19 16 11 Si 0.98 47.65 29.56 68.60 2.03 49.67 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.13 6.16 6.93 86.86 0.60 6.76 16 16 C 0.15 6.18 3.04 46.38 0.14 6.32 16 17 H 0.06 3.13 7.73 -2.39 -0.02 3.11 16 18 N -0.70 -21.26 5.18 -439.35 -2.28 -23.54 16 19 C 0.57 21.56 7.77 86.62 0.67 22.23 16 20 O -0.58 -30.40 15.32 15.04 0.23 -30.17 16 21 C -0.35 -9.97 6.05 -18.63 -0.11 -10.09 16 22 C 0.23 2.67 9.79 84.25 0.83 3.50 16 23 N -0.45 -2.39 2.97 -532.78 -1.58 -3.98 16 24 C 0.03 -0.21 9.98 127.77 1.27 1.07 16 25 C 0.19 1.69 6.64 41.20 0.27 1.97 16 26 C -0.13 0.20 9.34 71.23 0.67 0.86 16 27 C -0.30 -6.44 9.57 22.34 0.21 -6.23 16 28 C 0.38 13.24 6.96 25.44 0.18 13.42 16 29 O -0.57 -27.83 16.41 13.54 0.22 -27.61 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 33 H 0.04 2.36 7.04 -2.39 -0.02 2.35 16 34 H 0.00 0.09 7.78 -2.39 -0.02 0.07 16 35 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 7.56 6.59 -92.71 -0.61 6.95 16 39 H 0.21 0.42 6.29 -2.91 -0.02 0.40 16 40 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.12 -1.24 7.86 -2.38 -0.02 -1.26 16 42 H 0.12 -1.31 5.94 -2.39 -0.01 -1.33 16 43 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.12 -0.88 6.00 -2.39 -0.01 -0.90 16 45 H 0.10 -0.09 7.97 -2.39 -0.02 -0.11 16 46 H 0.15 2.98 8.01 -2.91 -0.02 2.96 16 Total: -1.00 -110.28 377.94 3.18 -107.10 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 0.40 Total: 1.35 kcal Atomic # 6 Polarization: 29.02 SS G_CDS: 7.84 Total: 36.86 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.98 Total: -121.30 kcal Atomic # 8 Polarization: -72.59 SS G_CDS: -1.10 Total: -73.69 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -110.28 3.18 -107.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081823489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.451 kcal (2) G-P(sol) polarization free energy of solvation -110.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds