Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99607 * 2 1 4 4 H 1.08995 * 110.91996 * 26.10126 * 3 2 1 5 5 C 1.54901 * 111.00558 * 262.19458 * 3 2 1 6 6 N 1.47429 * 104.83474 * 204.92344 * 5 3 2 7 7 C 1.36940 * 125.64644 * 204.09508 * 6 5 3 8 8 H 1.07993 * 119.99693 * 169.97485 * 7 6 5 9 9 C 1.38810 * 119.99983 * 349.98035 * 7 6 5 10 10 N 1.31613 * 120.00397 * 350.42160 * 9 7 6 11 11 Si 1.86802 * 119.99666 * 170.42275 * 9 7 6 12 12 H 1.48495 * 109.47147 * 94.14119 * 11 9 7 13 13 H 1.48500 * 109.47054 * 214.13856 * 11 9 7 14 14 H 1.48501 * 109.47259 * 334.13744 * 11 9 7 15 15 C 1.47015 * 108.70197 * 24.12802 * 6 5 3 16 16 C 1.54322 * 107.27201 * 358.94352 * 15 6 5 17 17 H 1.08996 * 110.72264 * 96.17501 * 16 15 6 18 18 N 1.46509 * 110.72192 * 219.26787 * 16 15 6 19 19 C 1.34771 * 119.99814 * 271.15828 * 18 16 15 20 20 O 1.21610 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.47395 * 119.99999 * 179.97438 * 19 18 16 22 22 C 1.37359 * 128.56916 * 270.02622 * 21 19 18 23 23 C 1.50698 * 126.82821 * 359.96195 * 22 21 19 24 24 O 1.33493 * 106.34646 * 179.97438 * 22 21 19 25 25 N 1.20660 * 113.15281 * 0.02562 * 24 22 21 26 26 C 1.30018 * 112.30428 * 359.73043 * 25 24 22 27 27 C 1.50694 * 127.33848 * 180.27510 * 26 25 24 28 28 C 1.52998 * 117.49794 * 8.89633 * 27 26 25 29 29 C 1.53002 * 117.49885 * 300.23817 * 27 26 25 30 30 H 1.08999 * 109.47419 * 60.00164 * 1 2 3 31 31 H 1.09001 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47057 * 299.99965 * 1 2 3 33 33 H 1.09000 * 110.37034 * 86.07849 * 5 3 2 34 34 H 1.09008 * 110.36771 * 323.76049 * 5 3 2 35 35 H 0.97002 * 120.00714 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.88285 * 239.52496 * 15 6 5 37 37 H 1.08997 * 110.01232 * 118.43539 * 15 6 5 38 38 H 0.96998 * 119.99807 * 91.15783 * 18 16 15 39 39 H 1.09004 * 109.47326 * 89.99481 * 23 22 21 40 40 H 1.08999 * 109.47637 * 209.99934 * 23 22 21 41 41 H 1.09003 * 109.47406 * 330.00325 * 23 22 21 42 42 H 1.09000 * 115.55160 * 154.56307 * 27 26 25 43 43 H 1.09003 * 117.50246 * 0.02562 * 28 27 26 44 44 H 1.09002 * 117.50322 * 145.02123 * 28 27 26 45 45 H 1.08996 * 117.49755 * 214.97785 * 29 27 26 46 46 H 1.09000 * 117.49844 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7329 -1.4327 6 7 3.4909 2.7229 -1.2412 7 6 3.8430 3.7012 -2.1325 8 1 4.5326 4.4779 -1.8370 9 6 3.3134 3.6944 -3.4155 10 7 2.6263 2.6546 -3.8385 11 14 3.5759 5.1613 -4.5420 12 1 4.7677 4.9233 -5.3951 13 1 2.3797 5.3448 -5.4027 14 1 3.7887 6.3821 -3.7236 15 6 4.1233 2.4854 0.0645 16 6 3.3824 1.3033 0.7242 17 1 3.9119 0.3677 0.5445 18 7 3.2145 1.5337 2.1613 19 6 4.1697 1.1340 3.0239 20 8 5.1708 0.5817 2.6096 21 6 4.0010 1.3663 4.4697 22 6 4.3885 2.4544 5.2131 23 6 5.0917 3.6884 4.7095 24 8 4.0184 2.2013 6.4705 25 7 3.4710 1.1336 6.5982 26 6 3.3715 0.4923 5.4716 27 6 2.7466 -0.8596 5.2415 28 6 1.9732 -1.4872 6.4029 29 6 3.3385 -2.0496 5.9993 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5685 2.1873 -1.9469 34 1 2.7852 0.8749 -1.9942 35 1 2.2565 2.6497 -4.7352 36 1 4.0316 3.3748 0.6881 37 1 5.1753 2.2346 -0.0706 38 1 2.4158 1.9739 2.4918 39 1 4.3524 4.4312 4.4099 40 1 5.7183 4.0984 5.5016 41 1 5.7132 3.4283 3.8526 42 1 2.3741 -1.0399 4.2331 43 1 1.9161 -0.9222 7.3333 44 1 1.0922 -2.0808 6.1587 45 1 3.3551 -3.0129 5.4896 46 1 4.1801 -1.8549 6.6640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081954627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = 38.514354 kcal Electronic energy + Delta-G solvation = -29560.614639 eV Core-core repulsion = 25455.831013 eV Total energy + Delta-G solvation = -4104.783626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.03271 -39.75036 -38.17060 -37.70045 -35.98782 -34.17102 -33.82701 -33.02557 -31.78412 -28.98690 -28.26421 -27.25063 -26.15376 -25.26830 -24.37397 -23.59769 -22.66829 -21.01872 -20.68503 -20.03500 -19.43536 -18.17043 -17.87263 -17.12514 -16.69826 -16.52422 -15.66816 -15.58856 -15.12374 -14.84307 -14.64726 -14.41953 -14.23717 -13.92997 -13.55632 -13.49756 -13.26710 -12.98527 -12.83209 -12.30170 -12.27504 -12.04152 -11.89345 -11.77689 -11.55779 -11.47697 -11.30336 -11.03452 -10.90764 -10.85896 -10.68548 -10.26818 -10.13844 -10.03399 -9.88250 -9.73619 -9.51671 -9.21986 -8.78218 -8.67830 -6.91385 -5.82103 -3.16977 1.14144 1.66394 2.43526 2.67632 3.24272 3.35744 3.41440 3.43259 3.54131 3.76932 4.03057 4.07196 4.45283 4.55778 4.64104 4.66357 4.76251 4.87154 5.07695 5.15244 5.19735 5.33666 5.34680 5.35849 5.42214 5.46777 5.52187 5.59761 5.61426 5.64446 5.70808 5.74470 5.79870 5.82649 5.86317 5.99353 6.09978 6.35370 6.62252 6.78430 7.18804 7.37583 7.53300 7.65794 7.72609 8.04383 8.13396 8.22072 9.08981 9.70716 10.35472 11.30313 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003149 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.241516 B = 8890.068958 C =10180.089984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.163 3.837 6 N -0.598 5.598 7 C -0.232 4.232 8 H 0.079 0.921 9 C -0.005 4.005 10 N -0.916 5.916 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.105 0.895 18 N -0.703 5.703 19 C 0.599 3.401 20 O -0.521 6.521 21 C -0.243 4.243 22 C 0.019 3.981 23 C -0.081 4.081 24 O 0.095 5.905 25 N -0.357 5.357 26 C 0.089 3.911 27 C -0.091 4.091 28 C -0.161 4.161 29 C -0.157 4.157 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.254 0.746 36 H 0.030 0.970 37 H 0.035 0.965 38 H 0.399 0.601 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -3.379 19.216 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.006 4.006 4 H 0.085 0.915 5 C 0.037 3.963 6 N -0.326 5.326 7 C -0.360 4.360 8 H 0.097 0.903 9 C -0.202 4.202 10 N -0.563 5.563 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.003 3.997 16 C 0.031 3.969 17 H 0.123 0.877 18 N -0.353 5.353 19 C 0.383 3.617 20 O -0.396 6.396 21 C -0.250 4.250 22 C -0.044 4.044 23 C -0.138 4.138 24 O 0.034 5.966 25 N -0.063 5.063 26 C -0.073 4.073 27 C -0.110 4.110 28 C -0.199 4.199 29 C -0.195 4.195 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.886 -4.128 19.938 20.564 hybrid contribution -0.332 1.098 -1.319 1.748 sum -3.218 -3.030 18.619 19.136 Atomic orbital electron populations 1.22716 0.81585 1.02074 0.99841 1.87869 1.19193 1.27548 1.95050 1.24002 0.92652 0.83950 0.99957 0.91464 1.21745 0.92817 0.92704 0.88993 1.44280 1.36260 1.36076 1.16014 1.19018 1.24348 1.01469 0.91207 0.90314 1.24853 1.00809 0.97856 0.96647 1.69938 1.40251 1.28168 1.17920 0.86104 0.77261 0.81842 0.80536 1.21475 1.21587 1.20536 1.21608 0.95923 0.93770 0.88357 1.22232 0.96852 1.00603 0.77236 0.87680 1.45973 1.21906 1.60317 1.07105 1.16819 0.83261 0.78497 0.83155 1.90847 1.28751 1.41539 1.78456 1.21895 1.10166 0.96679 0.96252 1.24643 0.98229 0.97764 0.83774 1.20517 1.00165 0.90788 1.02359 1.84530 1.55755 1.28586 1.27747 1.73534 1.15128 0.94981 1.22622 1.23716 0.99195 0.97120 0.87269 1.20274 1.04707 0.87051 0.98997 1.23044 0.95642 1.02916 0.98273 1.23053 0.97292 0.96672 1.02469 0.93618 0.90179 0.94791 0.90665 0.94029 0.93536 0.95240 0.94697 0.76698 0.88459 0.89093 0.88382 0.85218 0.88003 0.87749 0.87549 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.58 10.51 -35.23 -0.37 -6.95 16 3 C 0.05 0.98 3.17 -24.58 -0.08 0.90 16 4 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 5 C 0.16 3.83 5.15 -2.53 -0.01 3.81 16 6 N -0.60 -14.84 3.39 -170.08 -0.58 -15.41 16 7 C -0.23 -6.29 10.24 -15.06 -0.15 -6.45 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 10 N -0.92 -26.17 10.68 55.49 0.59 -25.58 16 11 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.13 2.70 6.99 -3.07 -0.02 2.68 16 16 C 0.14 2.43 3.01 -66.09 -0.20 2.23 16 17 H 0.11 2.11 7.62 -51.93 -0.40 1.71 16 18 N -0.70 -10.23 5.12 -53.11 -0.27 -10.50 16 19 C 0.60 9.28 7.60 -12.54 -0.10 9.18 16 20 O -0.52 -10.07 16.79 5.27 0.09 -9.98 16 21 C -0.24 -3.22 6.24 -102.89 -0.64 -3.86 16 22 C 0.02 0.22 7.55 -34.63 -0.26 -0.05 16 23 C -0.08 -0.64 10.33 36.00 0.37 -0.27 16 24 O 0.10 1.13 11.06 18.65 0.21 1.33 16 25 N -0.36 -4.58 11.71 34.78 0.41 -4.17 16 26 C 0.09 1.14 7.08 -79.77 -0.56 0.57 16 27 C -0.09 -1.01 6.31 -91.77 -0.58 -1.59 16 28 C -0.16 -1.44 10.16 -26.70 -0.27 -1.71 16 29 C -0.16 -1.49 10.24 -26.69 -0.27 -1.76 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 33 H 0.08 1.92 6.94 -51.93 -0.36 1.56 16 34 H 0.04 1.10 8.07 -51.92 -0.42 0.68 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 4.83 8.53 -40.82 -0.35 4.48 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -32.68 391.01 -7.79 -40.46 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.95 Total: 3.46 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.78 Total: 5.03 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.15 Total: -55.66 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.08 Total: -15.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.68 -7.79 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081954627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.979 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds