Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99607 * 2 1 4 4 H 1.08995 * 110.91996 * 26.10126 * 3 2 1 5 5 C 1.54901 * 111.00558 * 262.19458 * 3 2 1 6 6 N 1.47429 * 104.83474 * 204.92344 * 5 3 2 7 7 C 1.36940 * 125.64644 * 204.09508 * 6 5 3 8 8 H 1.07993 * 119.99693 * 169.97485 * 7 6 5 9 9 C 1.38810 * 119.99983 * 349.98035 * 7 6 5 10 10 N 1.31613 * 120.00397 * 350.42160 * 9 7 6 11 11 Si 1.86802 * 119.99666 * 170.42275 * 9 7 6 12 12 H 1.48495 * 109.47147 * 94.14119 * 11 9 7 13 13 H 1.48500 * 109.47054 * 214.13856 * 11 9 7 14 14 H 1.48501 * 109.47259 * 334.13744 * 11 9 7 15 15 C 1.47015 * 108.70197 * 24.12802 * 6 5 3 16 16 C 1.54322 * 107.27201 * 358.94352 * 15 6 5 17 17 H 1.08996 * 110.72264 * 96.17501 * 16 15 6 18 18 N 1.46509 * 110.72192 * 219.26787 * 16 15 6 19 19 C 1.34771 * 119.99814 * 271.15828 * 18 16 15 20 20 O 1.21610 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.47395 * 119.99999 * 179.97438 * 19 18 16 22 22 C 1.37359 * 128.56916 * 270.02622 * 21 19 18 23 23 C 1.50698 * 126.82821 * 359.96195 * 22 21 19 24 24 O 1.33493 * 106.34646 * 179.97438 * 22 21 19 25 25 N 1.20660 * 113.15281 * 0.02562 * 24 22 21 26 26 C 1.30018 * 112.30428 * 359.73043 * 25 24 22 27 27 C 1.50694 * 127.33848 * 180.27510 * 26 25 24 28 28 C 1.52998 * 117.49794 * 8.89633 * 27 26 25 29 29 C 1.53002 * 117.49885 * 300.23817 * 27 26 25 30 30 H 1.08999 * 109.47419 * 60.00164 * 1 2 3 31 31 H 1.09001 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47057 * 299.99965 * 1 2 3 33 33 H 1.09000 * 110.37034 * 86.07849 * 5 3 2 34 34 H 1.09008 * 110.36771 * 323.76049 * 5 3 2 35 35 H 0.97002 * 120.00714 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.88285 * 239.52496 * 15 6 5 37 37 H 1.08997 * 110.01232 * 118.43539 * 15 6 5 38 38 H 0.96998 * 119.99807 * 91.15783 * 18 16 15 39 39 H 1.09004 * 109.47326 * 89.99481 * 23 22 21 40 40 H 1.08999 * 109.47637 * 209.99934 * 23 22 21 41 41 H 1.09003 * 109.47406 * 330.00325 * 23 22 21 42 42 H 1.09000 * 115.55160 * 154.56307 * 27 26 25 43 43 H 1.09003 * 117.50246 * 0.02562 * 28 27 26 44 44 H 1.09002 * 117.50322 * 145.02123 * 28 27 26 45 45 H 1.08996 * 117.49755 * 214.97785 * 29 27 26 46 46 H 1.09000 * 117.49844 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4154 1.7329 -1.4327 6 7 3.4909 2.7229 -1.2412 7 6 3.8430 3.7012 -2.1325 8 1 4.5326 4.4779 -1.8370 9 6 3.3134 3.6944 -3.4155 10 7 2.6263 2.6546 -3.8385 11 14 3.5759 5.1613 -4.5420 12 1 4.7677 4.9233 -5.3951 13 1 2.3797 5.3448 -5.4027 14 1 3.7887 6.3821 -3.7236 15 6 4.1233 2.4854 0.0645 16 6 3.3824 1.3033 0.7242 17 1 3.9119 0.3677 0.5445 18 7 3.2145 1.5337 2.1613 19 6 4.1697 1.1340 3.0239 20 8 5.1708 0.5817 2.6096 21 6 4.0010 1.3663 4.4697 22 6 4.3885 2.4544 5.2131 23 6 5.0917 3.6884 4.7095 24 8 4.0184 2.2013 6.4705 25 7 3.4710 1.1336 6.5982 26 6 3.3715 0.4923 5.4716 27 6 2.7466 -0.8596 5.2415 28 6 1.9732 -1.4872 6.4029 29 6 3.3385 -2.0496 5.9993 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5685 2.1873 -1.9469 34 1 2.7852 0.8749 -1.9942 35 1 2.2565 2.6497 -4.7352 36 1 4.0316 3.3748 0.6881 37 1 5.1753 2.2346 -0.0706 38 1 2.4158 1.9739 2.4918 39 1 4.3524 4.4312 4.4099 40 1 5.7183 4.0984 5.5016 41 1 5.7132 3.4283 3.8526 42 1 2.3741 -1.0399 4.2331 43 1 1.9161 -0.9222 7.3333 44 1 1.0922 -2.0808 6.1587 45 1 3.3551 -3.0129 5.4896 46 1 4.1801 -1.8549 6.6640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081954627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = 16.760462 kcal Electronic energy + Delta-G solvation = -29561.557958 eV Core-core repulsion = 25455.831013 eV Total energy + Delta-G solvation = -4105.726946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.97513 -41.13621 -39.62195 -38.50019 -37.53527 -35.68495 -34.84546 -33.92661 -33.60472 -30.65655 -29.35656 -28.65175 -27.51335 -26.55716 -25.68757 -24.73460 -23.38125 -22.54491 -22.14489 -21.53278 -20.38755 -19.36330 -18.92424 -18.72056 -18.03527 -17.69968 -17.21313 -16.70690 -16.46087 -16.01305 -15.93539 -15.78025 -15.48214 -15.33220 -14.98381 -14.64034 -14.31945 -14.10193 -13.96240 -13.81979 -13.69181 -13.12745 -13.08263 -13.00683 -12.73393 -12.67121 -12.62003 -12.53763 -12.37766 -12.31929 -12.05897 -11.87572 -11.68859 -11.51682 -11.37899 -10.76171 -10.65511 -10.60375 -10.43511 -10.21547 -8.93575 -7.89552 -5.27656 0.23171 0.71342 1.22162 1.48806 1.49658 1.59435 1.67374 2.11939 2.45829 2.71471 2.76564 2.87725 3.19859 3.30796 3.51685 3.63489 3.76008 3.84470 3.86968 3.92901 3.97319 3.98875 4.04509 4.32198 4.36895 4.43243 4.58225 4.59562 4.63610 4.64707 4.66209 4.67689 4.84005 4.87263 4.89583 4.90304 5.01650 5.07912 5.13990 5.25724 5.33940 5.43586 5.62010 6.12107 6.27438 6.32833 6.99072 7.03152 7.12767 7.68729 8.33379 9.21480 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003149 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.241516 B = 8890.068958 C =10180.089984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.077 3.923 4 H 0.094 0.906 5 C 0.171 3.829 6 N -0.616 5.616 7 C -0.247 4.247 8 H 0.085 0.915 9 C -0.059 4.059 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.265 1.265 15 C 0.131 3.869 16 C 0.153 3.847 17 H 0.082 0.918 18 N -0.686 5.686 19 C 0.610 3.390 20 O -0.564 6.564 21 C -0.272 4.272 22 C 0.041 3.959 23 C -0.083 4.083 24 O 0.097 5.903 25 N -0.369 5.369 26 C 0.087 3.913 27 C -0.115 4.115 28 C -0.143 4.143 29 C -0.157 4.157 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.049 0.951 34 H -0.001 1.001 35 H 0.250 0.750 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.415 0.585 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.120 0.880 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -2.324 21.221 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.112 0.888 5 C 0.045 3.955 6 N -0.344 5.344 7 C -0.376 4.376 8 H 0.103 0.897 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.808 3.192 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.189 1.189 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.100 0.900 18 N -0.337 5.337 19 C 0.395 3.605 20 O -0.442 6.442 21 C -0.280 4.280 22 C -0.022 4.022 23 C -0.140 4.140 24 O 0.037 5.963 25 N -0.076 5.076 26 C -0.074 4.074 27 C -0.134 4.134 28 C -0.180 4.180 29 C -0.195 4.195 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.017 0.983 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.252 0.748 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.814 -3.052 21.998 22.534 hybrid contribution -0.026 0.738 -1.908 2.046 sum -3.839 -2.314 20.090 20.584 Atomic orbital electron populations 1.22999 0.79235 1.04007 1.00708 1.87861 1.21767 1.26739 1.94917 1.23588 0.93224 0.85143 0.96271 0.88800 1.21483 0.91443 0.90734 0.91873 1.44535 1.37121 1.35783 1.16996 1.19419 1.24152 1.02103 0.91911 0.89734 1.25695 1.00972 1.00439 0.98188 1.70145 1.41368 1.29999 1.17942 0.85056 0.76647 0.79114 0.78409 1.21650 1.21823 1.18916 1.21686 0.95017 0.95576 0.87216 1.21726 0.96139 0.98391 0.79039 0.89988 1.45694 1.22495 1.60131 1.05391 1.16991 0.82301 0.77187 0.83980 1.90828 1.30531 1.43416 1.79397 1.21659 1.12869 0.98408 0.95028 1.25150 0.96204 0.97808 0.83088 1.20736 1.00715 0.89818 1.02741 1.84524 1.55624 1.28319 1.27847 1.73523 1.15975 0.95408 1.22695 1.23986 0.98824 0.97642 0.86996 1.20403 1.06353 0.86892 0.99732 1.23103 0.95993 1.01956 0.96951 1.23129 0.97597 0.96653 1.02079 0.94539 0.87860 0.92036 0.93281 0.98254 0.94093 0.93171 0.96485 0.74760 0.86271 0.86479 0.89464 0.85417 0.88445 0.85592 0.86142 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.39 -13.42 10.51 -148.98 -1.57 -14.98 16 3 C 0.08 2.78 3.17 31.98 0.10 2.88 16 4 H 0.09 2.89 7.70 -2.39 -0.02 2.87 16 5 C 0.17 8.27 5.15 86.85 0.45 8.72 16 6 N -0.62 -31.15 3.39 -692.01 -2.35 -33.50 16 7 C -0.25 -13.53 10.24 84.03 0.86 -12.67 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 9 C -0.06 -3.28 5.40 84.86 0.46 -2.82 16 10 N -0.95 -55.76 10.68 21.65 0.23 -55.53 16 11 Si 0.98 44.39 29.56 68.60 2.03 46.41 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 C 0.13 5.46 6.99 86.73 0.61 6.07 16 16 C 0.15 5.48 3.01 46.18 0.14 5.62 16 17 H 0.08 3.38 7.62 -2.39 -0.02 3.36 16 18 N -0.69 -19.10 5.12 -440.19 -2.25 -21.35 16 19 C 0.61 18.50 7.60 86.66 0.66 19.16 16 20 O -0.56 -22.05 16.79 -4.06 -0.07 -22.12 16 21 C -0.27 -6.90 6.24 -18.74 -0.12 -7.02 16 22 C 0.04 0.84 7.55 25.48 0.19 1.03 16 23 C -0.08 -1.10 10.33 71.24 0.74 -0.37 16 24 O 0.10 2.10 11.06 76.99 0.85 2.95 16 25 N -0.37 -8.94 11.71 -44.76 -0.52 -9.46 16 26 C 0.09 2.13 7.08 45.16 0.32 2.45 16 27 C -0.11 -2.39 6.31 -11.54 -0.07 -2.47 16 28 C -0.14 -2.25 10.16 30.62 0.31 -1.94 16 29 C -0.16 -2.77 10.24 30.62 0.31 -2.46 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.05 2.60 6.94 -2.39 -0.02 2.58 16 34 H 0.00 -0.03 8.07 -2.38 -0.02 -0.05 16 35 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.05 1.89 8.03 -2.38 -0.02 1.87 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.42 9.04 8.53 -92.71 -0.79 8.25 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 42 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.10 1.65 7.97 -2.39 -0.02 1.63 16 44 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.38 391.01 2.75 -70.64 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.21 Total: 18.88 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.18 Total: 18.07 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.89 Total: -119.85 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.78 Total: -34.15 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -73.38 2.75 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081954627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.397 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds