Wall clock time and date at job start Tue Mar 31 2020 19:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99807 * 2 1 4 4 H 1.08996 * 110.78054 * 26.76511 * 3 2 1 5 5 C 1.54319 * 110.72255 * 263.52175 * 3 2 1 6 6 N 1.47019 * 107.27221 * 219.44786 * 5 3 2 7 7 C 1.36938 * 125.64791 * 178.90235 * 6 5 3 8 8 H 1.08002 * 119.99982 * 180.02562 * 7 6 5 9 9 C 1.38813 * 120.00080 * 0.02562 * 7 6 5 10 10 N 1.31617 * 119.99752 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46931 * 60.00064 * 11 9 7 13 13 H 1.48492 * 109.47059 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47153 * 300.00006 * 11 9 7 15 15 C 1.47463 * 108.72355 * 358.97276 * 6 5 3 16 16 C 1.54913 * 104.81179 * 24.07098 * 15 6 5 17 17 H 1.09003 * 111.00080 * 81.13661 * 16 15 6 18 18 N 1.46503 * 111.00524 * 204.95003 * 16 15 6 19 19 C 1.34781 * 119.99920 * 270.41381 * 18 16 15 20 20 O 1.21280 * 119.99926 * 354.85890 * 19 18 16 21 21 C 1.50698 * 119.99713 * 175.12829 * 19 18 16 22 22 C 1.50699 * 115.55158 * 304.62067 * 21 19 18 23 23 C 1.35449 * 126.77471 * 330.21604 * 22 21 19 24 24 C 1.41381 * 103.98594 * 179.90837 * 23 22 21 25 25 C 1.50694 * 126.80515 * 180.16288 * 24 23 22 26 26 N 1.30177 * 106.39519 * 0.36340 * 24 23 22 27 27 O 1.20925 * 111.60053 * 359.76482 * 26 24 23 28 28 C 1.53001 * 117.49424 * 158.95179 * 21 19 18 29 29 C 1.52996 * 117.49520 * 90.29348 * 21 19 18 30 30 H 1.08997 * 109.46852 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46759 * 299.99980 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99481 * 1 2 3 33 33 H 1.09003 * 109.88018 * 338.86689 * 5 3 2 34 34 H 1.08994 * 109.88406 * 99.87278 * 5 3 2 35 35 H 0.97005 * 119.99931 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.35198 * 265.25660 * 15 6 5 37 37 H 1.09000 * 110.40805 * 142.91875 * 15 6 5 38 38 H 0.97001 * 119.99917 * 90.42029 * 18 16 15 39 39 H 1.07997 * 128.01341 * 0.02562 * 23 22 21 40 40 H 1.08999 * 109.47460 * 270.26192 * 25 24 23 41 41 H 1.09003 * 109.47105 * 30.26530 * 25 24 23 42 42 H 1.09005 * 109.47012 * 150.26191 * 25 24 23 43 43 H 1.09001 * 117.50165 * 0.02562 * 28 21 19 44 44 H 1.09004 * 117.49871 * 145.02287 * 28 21 19 45 45 H 1.09010 * 117.49254 * 214.97575 * 29 21 19 46 46 H 1.08993 * 117.50111 * 359.97203 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3811 1.7381 -1.4341 6 7 3.6686 2.4439 -1.3580 7 6 4.3548 2.9692 -2.4203 8 1 5.2974 3.4712 -2.2593 9 6 3.8389 2.8563 -3.7041 10 7 2.6900 2.2449 -3.9002 11 14 4.7753 3.5722 -5.1532 12 1 6.1110 2.9297 -5.2455 13 1 4.0178 3.3202 -6.4053 14 1 4.9420 5.0352 -4.9609 15 6 4.0998 2.4913 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9156 0.3639 0.5395 18 7 3.2168 1.5251 2.1632 19 6 4.1768 1.1306 3.0230 20 8 5.1328 0.5035 2.6185 21 6 4.0593 1.4636 4.4881 22 6 3.8882 2.9257 4.8107 23 6 4.3616 3.9745 4.0962 24 6 3.9263 5.1069 4.8223 25 6 4.1726 6.5522 4.4739 26 7 3.2744 4.6536 5.8538 27 8 3.2426 3.4448 5.8644 28 6 4.8635 0.6123 5.4726 29 6 3.3434 0.4533 5.3868 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.4768 0.8602 -2.0731 34 1 1.6140 2.4031 -1.8308 35 1 2.3296 2.1658 -4.7973 36 1 3.7888 3.4291 0.5116 37 1 5.1811 2.3733 0.1222 38 1 2.4167 1.9608 2.4962 39 1 4.9366 3.9514 3.1823 40 1 5.1042 6.8830 4.9330 41 1 4.2434 6.6580 3.3913 42 1 3.3483 7.1610 4.8453 43 1 5.4779 -0.1883 5.0607 44 1 5.2685 1.1096 6.3540 45 1 2.7490 0.8463 6.2118 46 1 2.9571 -0.4518 4.9184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082061873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:13 Heat of formation + Delta-G solvation = 44.311446 kcal Electronic energy + Delta-G solvation = -29839.437898 eV Core-core repulsion = 25734.905652 eV Total energy + Delta-G solvation = -4104.532246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.11905 -40.25715 -38.49115 -36.82966 -35.90118 -34.96106 -34.15429 -31.89393 -31.56984 -28.95352 -28.81295 -27.41718 -26.15383 -25.19477 -23.93368 -23.43088 -22.74077 -21.36802 -20.58380 -20.24935 -19.46994 -18.20250 -17.75262 -17.11138 -16.74262 -16.48085 -15.63602 -15.40763 -15.09462 -14.65352 -14.39833 -14.30689 -14.18091 -13.80495 -13.55618 -13.46831 -13.27153 -13.18120 -12.91071 -12.59663 -12.32174 -11.93522 -11.91054 -11.67724 -11.56720 -11.36384 -11.26595 -11.06580 -11.04895 -10.82277 -10.78731 -10.22265 -10.16311 -10.07126 -9.91322 -9.81882 -9.39334 -9.16693 -8.83061 -8.62568 -6.93222 -5.76506 -3.11954 1.18533 2.03409 2.22100 2.86793 3.10969 3.39088 3.43394 3.44444 3.48737 3.98349 4.01894 4.08678 4.40707 4.46837 4.49093 4.61412 4.86620 5.04912 5.06971 5.27638 5.29106 5.32326 5.33380 5.35030 5.44870 5.53425 5.54105 5.58711 5.59321 5.64929 5.66379 5.79346 5.79949 5.88717 5.95111 5.98877 6.10091 6.42297 6.53240 6.76197 7.20822 7.43313 7.53221 7.67159 7.82305 8.06507 8.15356 8.21362 9.13766 9.73937 10.36584 11.34739 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.003548 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.383968 B = 7889.459695 C = 9052.898318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.599 5.599 7 C -0.231 4.231 8 H 0.080 0.920 9 C -0.005 4.005 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.108 0.892 18 N -0.705 5.705 19 C 0.561 3.439 20 O -0.521 6.521 21 C -0.095 4.095 22 C 0.007 3.993 23 C -0.212 4.212 24 C 0.023 3.977 25 C -0.078 4.078 26 N -0.366 5.366 27 O 0.100 5.900 28 C -0.124 4.124 29 C -0.144 4.144 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.398 0.602 39 H 0.173 0.827 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 0.305 19.299 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.359 4.359 8 H 0.098 0.902 9 C -0.201 4.201 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.126 0.874 18 N -0.355 5.355 19 C 0.344 3.656 20 O -0.397 6.397 21 C -0.099 4.099 22 C -0.056 4.056 23 C -0.233 4.233 24 C -0.136 4.136 25 C -0.135 4.135 26 N -0.071 5.071 27 O 0.034 5.966 28 C -0.162 4.162 29 C -0.181 4.181 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.232 0.768 39 H 0.191 0.809 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.179 0.300 19.754 19.876 hybrid contribution 0.165 0.791 -1.426 1.639 sum -2.014 1.090 18.328 18.471 Atomic orbital electron populations 1.22715 0.81682 1.02104 0.99765 1.87912 1.19121 1.27461 1.95041 1.23831 0.92820 0.84142 0.99499 0.91933 1.21555 0.88232 0.97300 0.88916 1.44234 1.21324 1.66535 1.00570 1.19017 1.02371 1.29847 0.84678 0.90196 1.24812 0.97367 1.00574 0.97392 1.69925 1.19118 1.47063 1.20779 0.86162 0.78910 0.78676 0.81792 1.21018 1.21547 1.21122 1.21823 0.97675 0.93744 0.86389 1.22489 0.96740 1.01218 0.76971 0.87376 1.45860 1.21609 1.60779 1.07232 1.18801 0.82767 0.79200 0.84798 1.90752 1.31716 1.39404 1.77790 1.19491 1.12428 0.85469 0.92553 1.22843 0.98111 0.94627 0.90052 1.22445 1.06618 0.90139 1.04117 1.23594 0.98463 0.99098 0.92421 1.20204 1.02902 0.87284 1.03118 1.73849 1.20652 0.90983 1.21629 1.84782 1.56971 1.15183 1.39634 1.23192 0.94468 1.00398 0.98141 1.23223 0.95985 0.98791 1.00086 0.90178 0.94845 0.93617 0.91892 0.93318 0.93569 0.95956 0.93182 0.76835 0.80934 0.90108 0.89551 0.90514 0.86203 0.87385 0.86827 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.76 10.43 -35.23 -0.37 -7.13 16 3 C 0.06 1.03 3.08 -24.90 -0.08 0.96 16 4 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 5 C 0.17 3.93 5.15 -3.07 -0.02 3.92 16 6 N -0.60 -15.04 3.40 -170.05 -0.58 -15.62 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 9 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 10 N -0.92 -26.58 10.31 55.49 0.57 -26.01 16 11 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.69 6.93 -2.51 -0.02 2.68 16 16 C 0.13 2.36 3.13 -65.78 -0.21 2.16 16 17 H 0.11 2.23 7.57 -51.93 -0.39 1.84 16 18 N -0.71 -10.03 5.17 -51.72 -0.27 -10.30 16 19 C 0.56 8.04 6.78 -10.98 -0.07 7.97 16 20 O -0.52 -9.39 16.13 5.56 0.09 -9.30 16 21 C -0.09 -1.04 2.44 -156.82 -0.38 -1.42 16 22 C 0.01 0.08 6.74 -35.30 -0.24 -0.15 16 23 C -0.21 -2.52 10.59 -39.38 -0.42 -2.94 16 24 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 25 C -0.08 -0.68 10.47 36.00 0.38 -0.30 16 26 N -0.37 -4.67 12.07 33.42 0.40 -4.27 16 27 O 0.10 1.19 10.97 17.19 0.19 1.38 16 28 C -0.12 -1.13 9.75 -26.69 -0.26 -1.39 16 29 C -0.14 -1.18 9.89 -26.69 -0.26 -1.45 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.39 8.11 -51.93 -0.42 -0.04 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.71 7.30 -51.93 -0.38 1.33 16 34 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 4.82 8.54 -40.82 -0.35 4.47 16 39 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.12 1.15 7.82 -51.93 -0.41 0.75 16 44 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.11 0.77 8.00 -51.92 -0.42 0.36 16 46 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -32.57 388.25 -7.39 -39.96 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.93 Total: 4.10 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.33 Total: 4.50 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.13 Total: -56.19 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.09 Total: -15.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.57 -7.39 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082061873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.273 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds