Wall clock time and date at job start Tue Mar 31 2020 19:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99807 * 2 1 4 4 H 1.08996 * 110.78054 * 26.76511 * 3 2 1 5 5 C 1.54319 * 110.72255 * 263.52175 * 3 2 1 6 6 N 1.47019 * 107.27221 * 219.44786 * 5 3 2 7 7 C 1.36938 * 125.64791 * 178.90235 * 6 5 3 8 8 H 1.08002 * 119.99982 * 180.02562 * 7 6 5 9 9 C 1.38813 * 120.00080 * 0.02562 * 7 6 5 10 10 N 1.31617 * 119.99752 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46931 * 60.00064 * 11 9 7 13 13 H 1.48492 * 109.47059 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47153 * 300.00006 * 11 9 7 15 15 C 1.47463 * 108.72355 * 358.97276 * 6 5 3 16 16 C 1.54913 * 104.81179 * 24.07098 * 15 6 5 17 17 H 1.09003 * 111.00080 * 81.13661 * 16 15 6 18 18 N 1.46503 * 111.00524 * 204.95003 * 16 15 6 19 19 C 1.34781 * 119.99920 * 270.41381 * 18 16 15 20 20 O 1.21280 * 119.99926 * 354.85890 * 19 18 16 21 21 C 1.50698 * 119.99713 * 175.12829 * 19 18 16 22 22 C 1.50699 * 115.55158 * 304.62067 * 21 19 18 23 23 C 1.35449 * 126.77471 * 330.21604 * 22 21 19 24 24 C 1.41381 * 103.98594 * 179.90837 * 23 22 21 25 25 C 1.50694 * 126.80515 * 180.16288 * 24 23 22 26 26 N 1.30177 * 106.39519 * 0.36340 * 24 23 22 27 27 O 1.20925 * 111.60053 * 359.76482 * 26 24 23 28 28 C 1.53001 * 117.49424 * 158.95179 * 21 19 18 29 29 C 1.52996 * 117.49520 * 90.29348 * 21 19 18 30 30 H 1.08997 * 109.46852 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46759 * 299.99980 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99481 * 1 2 3 33 33 H 1.09003 * 109.88018 * 338.86689 * 5 3 2 34 34 H 1.08994 * 109.88406 * 99.87278 * 5 3 2 35 35 H 0.97005 * 119.99931 * 180.02562 * 10 9 7 36 36 H 1.08996 * 110.35198 * 265.25660 * 15 6 5 37 37 H 1.09000 * 110.40805 * 142.91875 * 15 6 5 38 38 H 0.97001 * 119.99917 * 90.42029 * 18 16 15 39 39 H 1.07997 * 128.01341 * 0.02562 * 23 22 21 40 40 H 1.08999 * 109.47460 * 270.26192 * 25 24 23 41 41 H 1.09003 * 109.47105 * 30.26530 * 25 24 23 42 42 H 1.09005 * 109.47012 * 150.26191 * 25 24 23 43 43 H 1.09001 * 117.50165 * 0.02562 * 28 21 19 44 44 H 1.09004 * 117.49871 * 145.02287 * 28 21 19 45 45 H 1.09010 * 117.49254 * 214.97575 * 29 21 19 46 46 H 1.08993 * 117.50111 * 359.97203 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3811 1.7381 -1.4341 6 7 3.6686 2.4439 -1.3580 7 6 4.3548 2.9692 -2.4203 8 1 5.2974 3.4712 -2.2593 9 6 3.8389 2.8563 -3.7041 10 7 2.6900 2.2449 -3.9002 11 14 4.7753 3.5722 -5.1532 12 1 6.1110 2.9297 -5.2455 13 1 4.0178 3.3202 -6.4053 14 1 4.9420 5.0352 -4.9609 15 6 4.0998 2.4913 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9156 0.3639 0.5395 18 7 3.2168 1.5251 2.1632 19 6 4.1768 1.1306 3.0230 20 8 5.1328 0.5035 2.6185 21 6 4.0593 1.4636 4.4881 22 6 3.8882 2.9257 4.8107 23 6 4.3616 3.9745 4.0962 24 6 3.9263 5.1069 4.8223 25 6 4.1726 6.5522 4.4739 26 7 3.2744 4.6536 5.8538 27 8 3.2426 3.4448 5.8644 28 6 4.8635 0.6123 5.4726 29 6 3.3434 0.4533 5.3868 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.4768 0.8602 -2.0731 34 1 1.6140 2.4031 -1.8308 35 1 2.3296 2.1658 -4.7973 36 1 3.7888 3.4291 0.5116 37 1 5.1811 2.3733 0.1222 38 1 2.4167 1.9608 2.4962 39 1 4.9366 3.9514 3.1823 40 1 5.1042 6.8830 4.9330 41 1 4.2434 6.6580 3.3913 42 1 3.3483 7.1610 4.8453 43 1 5.4779 -0.1883 5.0607 44 1 5.2685 1.1096 6.3540 45 1 2.7490 0.8463 6.2118 46 1 2.9571 -0.4518 4.9184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082061873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:12 Heat of formation + Delta-G solvation = 22.312001 kcal Electronic energy + Delta-G solvation = -29840.391865 eV Core-core repulsion = 25734.905652 eV Total energy + Delta-G solvation = -4105.486213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.01340 -41.45025 -39.93288 -37.85432 -37.42809 -35.83287 -35.65998 -33.69332 -32.53015 -30.63224 -29.62920 -29.03985 -27.54454 -26.57390 -25.36249 -24.34805 -23.46545 -22.56990 -22.18055 -21.80926 -20.52276 -19.33154 -18.83892 -18.66030 -18.00016 -17.63789 -17.24291 -16.59398 -16.38459 -16.00262 -15.82967 -15.58919 -15.43032 -15.08276 -14.79025 -14.54477 -14.31113 -14.22239 -14.07120 -13.91705 -13.62306 -13.43468 -13.22640 -13.00735 -12.74337 -12.62748 -12.58307 -12.40980 -12.33099 -12.18351 -12.10478 -11.89860 -11.85532 -11.66274 -11.09051 -11.00208 -10.76656 -10.64199 -10.24290 -10.15838 -8.97526 -7.87376 -5.25626 0.30805 1.14758 1.17389 1.46381 1.49857 1.55851 1.76874 2.09258 2.46314 2.65133 2.75088 3.17353 3.19776 3.32256 3.45244 3.49389 3.66332 3.78164 3.86850 3.89032 4.03367 4.07766 4.21910 4.34852 4.42637 4.49004 4.57809 4.61303 4.63927 4.66575 4.68470 4.78894 4.82101 4.84717 4.86856 4.90779 4.96515 5.13770 5.20335 5.29034 5.35514 5.41957 5.65384 6.12793 6.29055 6.37038 7.03349 7.05948 7.19082 7.69510 8.31706 9.21882 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.003548 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.383968 B = 7889.459695 C = 9052.898318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.175 3.825 6 N -0.620 5.620 7 C -0.248 4.248 8 H 0.084 0.916 9 C -0.060 4.060 10 N -0.949 5.949 11 Si 0.980 3.020 12 H -0.279 1.279 13 H -0.293 1.293 14 H -0.274 1.274 15 C 0.133 3.867 16 C 0.150 3.850 17 H 0.081 0.919 18 N -0.693 5.693 19 C 0.564 3.436 20 O -0.561 6.561 21 C -0.109 4.109 22 C 0.017 3.983 23 C -0.228 4.228 24 C 0.021 3.979 25 C -0.079 4.079 26 N -0.385 5.385 27 O 0.103 5.897 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.248 0.752 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.412 0.588 39 H 0.168 0.832 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 0.824 21.511 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.017 3.983 4 H 0.110 0.890 5 C 0.049 3.951 6 N -0.348 5.348 7 C -0.377 4.377 8 H 0.102 0.898 9 C -0.253 4.253 10 N -0.597 5.597 11 Si 0.807 3.193 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.199 1.199 15 C 0.006 3.994 16 C 0.044 3.956 17 H 0.099 0.901 18 N -0.343 5.343 19 C 0.350 3.650 20 O -0.439 6.439 21 C -0.114 4.114 22 C -0.046 4.046 23 C -0.250 4.250 24 C -0.137 4.137 25 C -0.136 4.136 26 N -0.091 5.091 27 O 0.038 5.962 28 C -0.157 4.157 29 C -0.156 4.156 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.186 0.814 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.695 0.829 22.024 22.204 hybrid contribution 0.325 0.588 -2.080 2.186 sum -2.370 1.417 19.944 20.134 Atomic orbital electron populations 1.22994 0.79317 1.03978 1.00685 1.87896 1.21740 1.26837 1.94924 1.23472 0.93570 0.85280 0.95950 0.88958 1.21273 0.87217 0.94757 0.91811 1.44492 1.21859 1.66437 1.01984 1.19411 1.02743 1.29709 0.85805 0.89804 1.25649 0.98364 1.01343 0.99943 1.70150 1.20506 1.48288 1.20732 0.85140 0.77541 0.78369 0.78201 1.20536 1.21894 1.19933 1.21919 0.97320 0.95555 0.84601 1.21909 0.95816 0.98743 0.79154 0.90134 1.45620 1.22443 1.60846 1.05427 1.19283 0.81668 0.77968 0.86059 1.90740 1.33165 1.41180 1.78815 1.19267 1.15712 0.85953 0.90436 1.22819 0.97436 0.94582 0.89801 1.22505 1.07321 0.90736 1.04404 1.23999 0.97657 1.00244 0.91846 1.20332 1.03825 0.85780 1.03683 1.73839 1.21619 0.91324 1.22354 1.84763 1.56896 1.14973 1.39576 1.23314 0.95292 0.99487 0.97640 1.23409 0.95584 0.97580 0.99075 0.87972 0.91847 0.94672 0.96330 0.96055 0.94228 0.94039 0.94298 0.75107 0.81406 0.88748 0.88943 0.89882 0.86958 0.85659 0.84654 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -13.91 10.43 -148.98 -1.55 -15.47 16 3 C 0.08 2.79 3.08 31.78 0.10 2.89 16 4 H 0.09 2.83 7.68 -2.39 -0.02 2.81 16 5 C 0.18 8.64 5.15 86.73 0.45 9.08 16 6 N -0.62 -31.97 3.40 -691.90 -2.35 -34.32 16 7 C -0.25 -13.94 10.28 84.03 0.86 -13.08 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 10 N -0.95 -56.64 10.31 21.65 0.22 -56.42 16 11 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.13 5.49 6.93 86.85 0.60 6.09 16 16 C 0.15 5.41 3.13 46.38 0.15 5.56 16 17 H 0.08 3.41 7.57 -2.39 -0.02 3.39 16 18 N -0.69 -18.74 5.17 -435.94 -2.25 -20.99 16 19 C 0.56 15.54 6.78 87.66 0.59 16.14 16 20 O -0.56 -20.18 16.13 -3.03 -0.05 -20.23 16 21 C -0.11 -2.16 2.44 -53.68 -0.13 -2.29 16 22 C 0.02 0.36 6.74 25.04 0.17 0.53 16 23 C -0.23 -5.11 10.59 22.40 0.24 -4.87 16 24 C 0.02 0.45 7.33 43.58 0.32 0.77 16 25 C -0.08 -1.23 10.47 71.23 0.75 -0.49 16 26 N -0.38 -9.09 12.07 -49.56 -0.60 -9.69 16 27 O 0.10 2.20 10.97 71.69 0.79 2.99 16 28 C -0.12 -1.88 9.75 30.62 0.30 -1.59 16 29 C -0.12 -1.58 9.89 30.62 0.30 -1.27 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 34 H 0.02 1.15 7.50 -2.39 -0.02 1.13 16 35 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.41 8.94 8.54 -92.71 -0.79 8.15 16 39 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.11 1.99 7.82 -2.39 -0.02 1.97 16 44 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.14 1.26 8.00 -2.38 -0.02 1.25 16 46 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.28 388.25 2.83 -70.45 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.21 Total: 19.61 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.39 Total: 16.46 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -4.98 Total: -121.41 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.82 Total: -32.71 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.28 2.83 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082061873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.765 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds