Wall clock time and date at job start Tue Mar 31 2020 19:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34866 * 119.09673 * 2 1 4 4 C 1.41668 * 119.33267 * 180.27382 * 3 2 1 5 5 O 1.22084 * 121.06488 * 179.97438 * 4 3 2 6 6 C 1.47101 * 117.86748 * 359.97438 * 4 3 2 7 7 C 1.47289 * 120.87935 * 180.02562 * 6 4 3 8 8 O 1.21619 * 120.00270 * 359.97400 * 7 6 4 9 9 N 1.34778 * 119.99612 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99761 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46276 * 325.01920 * 10 9 7 12 12 C 1.53037 * 109.46279 * 84.99902 * 10 9 7 13 13 C 1.53193 * 109.31316 * 58.65678 * 12 10 9 14 14 N 1.46922 * 108.77895 * 54.63251 * 13 12 10 15 15 C 1.36937 * 120.63185 * 126.36861 * 14 13 12 16 16 H 1.07996 * 120.00131 * 207.68545 * 15 14 13 17 17 C 1.38820 * 119.99667 * 27.68668 * 15 14 13 18 18 N 1.31614 * 120.00183 * 17.37033 * 17 15 14 19 19 Si 1.86795 * 119.99788 * 197.37071 * 17 15 14 20 20 H 1.48498 * 109.47415 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47289 * 120.00099 * 19 17 15 22 22 H 1.48501 * 109.47350 * 239.99991 * 19 17 15 23 23 C 1.46928 * 118.73787 * 306.39529 * 14 13 12 24 24 C 1.53046 * 109.45590 * 205.06670 * 10 9 7 25 25 H 1.09003 * 109.49878 * 181.39210 * 24 10 9 26 26 O 1.42902 * 109.49695 * 61.29583 * 24 10 9 27 27 C 1.37979 * 118.23438 * 0.02562 * 6 4 3 28 28 N 1.34351 * 120.37602 * 0.02562 * 27 6 4 29 29 C 1.46498 * 118.80675 * 179.97438 * 28 27 6 30 30 H 1.08993 * 109.47197 * 269.73222 * 1 2 3 31 31 H 1.09002 * 109.46651 * 29.73466 * 1 2 3 32 32 H 1.09004 * 109.46975 * 149.72866 * 1 2 3 33 33 H 1.07997 * 120.33167 * 0.25467 * 3 2 1 34 34 H 0.97000 * 120.00342 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.49759 * 178.60601 * 12 10 9 36 36 H 1.08994 * 109.49847 * 298.66987 * 12 10 9 37 37 H 1.08995 * 109.58771 * 174.42640 * 13 12 10 38 38 H 1.09010 * 109.58490 * 294.70261 * 13 12 10 39 39 H 0.96996 * 120.00500 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.58719 * 173.39754 * 23 14 13 41 41 H 1.08998 * 109.58666 * 293.81722 * 23 14 13 42 42 H 0.96707 * 113.99613 * 179.97438 * 26 24 10 43 43 H 1.08009 * 119.81322 * 180.02562 * 27 6 4 44 44 H 1.09005 * 109.47254 * 269.98048 * 29 28 27 45 45 H 1.08994 * 109.47334 * 29.97876 * 29 28 27 46 46 H 1.08998 * 109.46781 * 149.98261 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5796 1.1843 -0.0059 5 8 4.2052 2.2326 -0.0065 6 6 4.2725 -0.1133 -0.0112 7 6 5.7437 -0.1846 -0.0169 8 8 6.4021 0.8379 -0.0178 9 7 6.3601 -1.3831 -0.0212 10 6 7.8234 -1.4541 -0.0264 11 1 8.2250 -0.6295 -0.6154 12 6 8.3437 -1.3558 1.4095 13 6 7.7504 -2.4964 2.2425 14 7 8.0495 -3.7723 1.5784 15 6 8.6679 -4.7859 2.2606 16 1 9.2737 -5.5042 1.7282 17 6 8.5161 -4.8901 3.6365 18 7 7.5346 -4.2542 4.2403 19 14 9.7048 -5.9328 4.6310 20 1 10.7106 -6.5395 3.7225 21 1 10.3929 -5.0796 5.6329 22 1 8.9555 -7.0088 5.3282 23 6 7.6730 -3.9399 0.1681 24 6 8.2672 -2.7833 -0.6417 25 1 9.3552 -2.8475 -0.6233 26 8 7.8070 -2.8608 -1.9924 27 6 3.5077 -1.2617 -0.0107 28 7 2.1664 -1.1847 -0.0060 29 6 1.3881 -2.4258 -0.0062 30 1 -0.3633 -0.0048 1.0276 31 1 -0.3633 0.8924 -0.5097 32 1 -0.3633 -0.8876 -0.5181 33 1 1.6136 2.1083 0.0041 34 1 5.8350 -2.1987 -0.0202 35 1 9.4310 -1.4334 1.4086 36 1 8.0477 -0.3988 1.8390 37 1 8.1933 -2.4901 3.2384 38 1 6.6709 -2.3676 2.3220 39 1 7.4282 -4.3272 5.2017 40 1 8.0648 -4.8863 -0.2048 41 1 6.5869 -3.9303 0.0762 42 1 8.0531 -3.6789 -2.4454 43 1 3.9900 -2.2281 -0.0142 44 1 1.1912 -2.7311 -1.0340 45 1 1.9508 -3.2077 0.5036 46 1 0.4430 -2.2620 0.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090341023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:03 Heat of formation + Delta-G solvation = -81.758207 kcal Electronic energy + Delta-G solvation = -30120.383339 eV Core-core repulsion = 26010.384303 eV Total energy + Delta-G solvation = -4109.999036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25133 -40.99584 -39.43611 -38.67291 -36.93748 -35.59028 -34.52406 -33.82704 -33.20528 -31.76231 -30.25279 -28.92702 -27.68574 -27.12783 -25.27890 -24.06847 -23.67013 -22.99067 -21.83553 -20.35763 -19.41005 -18.85730 -18.37543 -17.96995 -17.29395 -17.02133 -16.93631 -16.79359 -16.52897 -15.96542 -15.81622 -15.62474 -15.44030 -14.99512 -14.77635 -14.69292 -14.36241 -14.19784 -13.89798 -13.84699 -13.78911 -13.52364 -13.33650 -13.24486 -13.00430 -12.75762 -12.64494 -12.56398 -12.37330 -12.14040 -11.99142 -11.82800 -11.30200 -11.14116 -11.00014 -10.50904 -10.49391 -10.31281 -10.02542 -9.05517 -8.70770 -7.88210 -5.33627 -0.20929 0.31633 1.46339 1.47275 1.52001 1.59924 1.92313 2.18276 2.50405 2.79470 3.15040 3.21653 3.29019 3.59164 3.63220 3.65971 3.81764 3.89608 4.06791 4.18415 4.25901 4.34111 4.38249 4.38534 4.49486 4.53180 4.67372 4.69529 4.73761 4.82424 4.86786 4.88715 4.95371 5.05259 5.12633 5.13691 5.30361 5.40654 5.54197 5.64471 5.69255 5.70070 5.79605 6.36217 6.62117 6.92377 7.08782 7.12687 7.36147 7.81739 8.33281 9.18118 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003473 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.284850 B = 8059.665001 C = 8782.700769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.187 3.813 3 C -0.303 4.303 4 C 0.384 3.616 5 O -0.566 6.566 6 C -0.349 4.349 7 C 0.567 3.433 8 O -0.581 6.581 9 N -0.698 5.698 10 C 0.169 3.831 11 H 0.063 0.937 12 C -0.142 4.142 13 C 0.189 3.811 14 N -0.600 5.600 15 C -0.261 4.261 16 H 0.074 0.926 17 C -0.044 4.044 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.292 1.292 23 C 0.121 3.879 24 C 0.097 3.903 25 H 0.069 0.931 26 O -0.570 6.570 27 C 0.217 3.783 28 N -0.456 5.456 29 C 0.031 3.969 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.007 0.993 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.396 0.604 43 H 0.195 0.805 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.041 -3.533 -11.613 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 C -0.326 4.326 4 C 0.277 3.723 5 O -0.455 6.455 6 C -0.360 4.360 7 C 0.356 3.644 8 O -0.461 6.461 9 N -0.350 5.350 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.183 4.183 13 C 0.063 3.937 14 N -0.324 5.324 15 C -0.391 4.391 16 H 0.092 0.908 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.225 1.225 22 H -0.219 1.219 23 C -0.005 4.005 24 C 0.036 3.964 25 H 0.087 0.913 26 O -0.377 6.377 27 C 0.083 3.917 28 N -0.139 5.139 29 C -0.107 4.107 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.241 0.759 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.246 0.754 43 H 0.212 0.788 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.686 -1.916 -11.344 21.944 hybrid contribution 1.224 -0.817 0.947 1.750 sum -17.462 -2.733 -10.397 20.506 Atomic orbital electron populations 1.21398 0.83574 1.07052 1.06105 1.20938 0.97213 0.83765 0.90177 1.22139 0.93793 0.99560 1.17143 1.18928 0.90474 0.87552 0.75318 1.90749 1.71756 1.35376 1.47611 1.22268 0.93264 0.96512 1.23971 1.17991 0.87488 0.83243 0.75646 1.90764 1.67393 1.35983 1.51949 1.45660 1.07005 1.07458 1.74923 1.20658 0.80296 0.97307 0.95389 0.91885 1.22405 1.00940 0.99210 0.95712 1.20420 0.95563 0.82783 0.94959 1.44147 1.69447 1.11409 1.07436 1.19536 1.22161 1.06887 0.90513 0.90813 1.25709 0.98583 1.00793 0.98961 1.70163 1.30823 1.47677 1.08924 0.85302 0.79056 0.77935 0.78679 1.18890 1.22508 1.21854 1.21677 0.97312 0.96866 0.84621 1.22337 0.97960 0.94202 0.81947 0.91333 1.86480 1.80912 1.45819 1.24524 1.22473 0.83314 0.99295 0.86656 1.43180 1.04668 1.09212 1.56834 1.23106 0.98469 0.82171 1.06957 0.87219 0.87877 0.86901 0.82287 0.75895 0.91244 0.93527 0.92905 0.97520 0.94205 0.90674 0.94928 0.75383 0.78819 0.87147 0.87540 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 8.96 71.24 0.64 0.33 16 2 C 0.19 2.62 6.64 41.21 0.27 2.89 16 3 C -0.30 -7.55 9.57 22.34 0.21 -7.34 16 4 C 0.38 14.82 6.96 25.45 0.18 15.00 16 5 O -0.57 -28.74 16.41 13.55 0.22 -28.52 16 6 C -0.35 -12.04 6.05 -18.63 -0.11 -12.15 16 7 C 0.57 23.92 7.74 86.62 0.67 24.59 16 8 O -0.58 -30.88 15.23 15.05 0.23 -30.65 16 9 N -0.70 -25.11 4.11 -445.79 -1.83 -26.94 16 10 C 0.17 6.47 2.47 45.02 0.11 6.58 16 11 H 0.06 2.66 7.57 -2.39 -0.02 2.64 16 12 C -0.14 -6.08 5.77 30.67 0.18 -5.90 16 13 C 0.19 8.98 5.05 86.36 0.44 9.41 16 14 N -0.60 -27.32 2.99 -699.10 -2.09 -29.41 16 15 C -0.26 -13.18 9.59 84.04 0.81 -12.37 16 16 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 17 C -0.04 -2.34 4.91 84.86 0.42 -1.93 16 18 N -0.93 -52.32 11.19 21.65 0.24 -52.08 16 19 Si 0.96 42.78 29.59 68.60 2.03 44.81 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 C 0.12 4.21 5.84 86.36 0.50 4.72 16 24 C 0.10 3.11 3.36 30.67 0.10 3.21 16 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 26 O -0.57 -15.30 13.21 -148.98 -1.97 -17.27 16 27 C 0.22 4.48 9.79 84.25 0.83 5.31 16 28 N -0.46 -5.70 2.97 -532.77 -1.58 -7.28 16 29 C 0.03 0.04 9.63 127.77 1.23 1.27 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.10 0.19 8.05 -2.39 -0.02 0.17 16 32 H 0.11 -0.38 6.49 -2.39 -0.02 -0.39 16 33 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.40 12.17 4.94 -92.71 -0.46 11.71 16 35 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.91 6.03 -2.39 -0.01 2.89 16 38 H 0.01 0.33 7.74 -2.38 -0.02 0.32 16 39 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.07 2.39 7.93 -2.38 -0.02 2.37 16 41 H 0.03 1.06 6.64 -2.39 -0.02 1.05 16 42 H 0.40 6.65 9.08 -74.05 -0.67 5.97 16 43 H 0.20 2.88 6.35 -2.91 -0.02 2.86 16 44 H 0.11 -0.31 8.14 -2.38 -0.02 -0.33 16 45 H 0.11 0.06 7.96 -2.39 -0.02 0.04 16 46 H 0.12 -0.47 6.37 -2.39 -0.02 -0.49 16 Total: -1.00 -94.96 369.50 1.62 -93.34 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.10 Total: 20.39 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 6.47 Total: 33.61 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -5.27 Total: -115.71 kcal Atomic # 8 Polarization: -74.92 SS G_CDS: -1.52 Total: -76.44 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -94.96 1.62 -93.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.581 kcal (2) G-P(sol) polarization free energy of solvation -94.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds