Wall clock time and date at job start Tue Mar 31 2020 19:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34871 * 119.10187 * 2 1 4 4 C 1.41664 * 119.33944 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06695 * 179.97438 * 4 3 2 6 6 C 1.47089 * 117.86512 * 0.02562 * 4 3 2 7 7 C 1.47298 * 120.88020 * 179.97438 * 6 4 3 8 8 O 1.21619 * 120.00308 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99659 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99739 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46038 * 324.97571 * 10 9 7 12 12 C 1.53040 * 109.46202 * 84.93390 * 10 9 7 13 13 C 1.52761 * 109.38481 * 181.25979 * 12 10 9 14 14 N 1.46926 * 109.00981 * 305.58864 * 13 12 10 15 15 C 1.36935 * 120.62957 * 233.58548 * 14 13 12 16 16 H 1.07998 * 119.99875 * 36.78926 * 15 14 13 17 17 C 1.38812 * 119.99964 * 216.79753 * 15 14 13 18 18 N 1.31621 * 120.00083 * 193.72420 * 17 15 14 19 19 Si 1.86798 * 119.99873 * 13.71990 * 17 15 14 20 20 H 1.48500 * 109.47173 * 273.14886 * 19 17 15 21 21 H 1.48503 * 109.47312 * 33.14922 * 19 17 15 22 22 H 1.48499 * 109.47089 * 153.14987 * 19 17 15 23 23 C 1.46926 * 118.73554 * 53.30715 * 14 13 12 24 24 C 1.53043 * 109.45965 * 205.00138 * 10 9 7 25 25 H 1.08994 * 109.49529 * 298.56538 * 24 10 9 26 26 O 1.42902 * 109.49577 * 58.66307 * 24 10 9 27 27 C 1.37987 * 118.23744 * 0.27353 * 6 4 3 28 28 N 1.34342 * 120.37348 * 359.46707 * 27 6 4 29 29 C 1.46494 * 118.81186 * 180.26545 * 28 27 6 30 30 H 1.08991 * 109.47199 * 96.49572 * 1 2 3 31 31 H 1.09000 * 109.46623 * 216.49828 * 1 2 3 32 32 H 1.09001 * 109.46959 * 336.49565 * 1 2 3 33 33 H 1.08000 * 120.32607 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00550 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.49661 * 301.33829 * 12 10 9 36 36 H 1.09001 * 109.49877 * 61.43333 * 12 10 9 37 37 H 1.09001 * 109.51144 * 185.70476 * 13 12 10 38 38 H 1.08999 * 109.43258 * 65.42745 * 13 12 10 39 39 H 0.97000 * 119.99982 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.58677 * 66.43343 * 23 14 13 41 41 H 1.09006 * 109.58317 * 186.71571 * 23 14 13 42 42 H 0.96703 * 113.99396 * 179.83287 * 26 24 10 43 43 H 1.08006 * 119.81475 * 179.70336 * 27 6 4 44 44 H 1.08996 * 109.47046 * 264.66828 * 29 28 27 45 45 H 1.09007 * 109.46884 * 24.66421 * 29 28 27 46 46 H 1.08999 * 109.47457 * 144.66044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1132 -0.0017 7 6 5.7437 -0.1845 -0.0029 8 8 6.4022 0.8380 -0.0025 9 7 6.3602 -1.3831 -0.0044 10 6 7.8235 -1.4541 -0.0050 11 1 8.2268 -0.6304 -0.5941 12 6 8.3395 -1.3531 1.4322 13 6 9.8665 -1.3958 1.4269 14 7 10.3091 -2.5992 0.7096 15 6 11.1754 -3.4823 1.2968 16 1 11.1018 -3.6887 2.3543 17 6 12.1483 -4.1122 0.5328 18 7 12.7988 -5.1478 1.0193 19 14 12.5343 -3.4899 -1.1856 20 1 11.6138 -4.1272 -2.1612 21 1 12.3588 -2.0159 -1.2294 22 1 13.9371 -3.8319 -1.5325 23 6 9.7997 -2.8403 -0.6473 24 6 8.2691 -2.7844 -0.6166 25 1 7.8870 -3.6080 -0.0136 26 8 7.7611 -2.8912 -1.9479 27 6 3.5077 -1.2617 -0.0080 28 7 2.1665 -1.1847 -0.0021 29 6 1.3881 -2.4257 -0.0031 30 1 -0.3633 -0.1162 -1.0210 31 1 -0.3632 -0.8261 0.6113 32 1 -0.3633 0.9424 0.4099 33 1 1.6137 2.1083 -0.0004 34 1 5.8351 -2.1986 -0.0051 35 1 8.0021 -0.4159 1.8749 36 1 7.9567 -2.1903 2.0159 37 1 10.2334 -1.4262 2.4528 38 1 10.2523 -0.5085 0.9248 39 1 13.4784 -5.5882 0.4853 40 1 10.1800 -2.0733 -1.3220 41 1 10.1247 -3.8226 -0.9904 42 1 8.0075 -3.7107 -2.3983 43 1 3.9900 -2.2280 -0.0138 44 1 1.1099 -2.6792 -1.0260 45 1 1.9880 -3.2312 0.4205 46 1 0.4873 -2.2902 0.5956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090341024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:08 Heat of formation + Delta-G solvation = -50.622456 kcal Electronic energy + Delta-G solvation = -29496.073346 eV Core-core repulsion = 25387.424457 eV Total energy + Delta-G solvation = -4108.648888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49060 -39.61935 -38.28467 -37.54331 -35.50152 -34.37956 -33.79149 -32.96236 -32.02612 -30.22028 -29.23798 -28.29969 -27.27396 -25.17194 -24.36242 -22.97646 -22.21894 -21.44999 -20.53773 -19.76457 -18.30506 -17.84251 -16.99953 -16.85818 -16.46030 -16.41850 -16.03079 -15.84266 -14.86706 -14.68427 -14.59352 -14.31509 -13.97959 -13.97561 -13.79892 -13.55946 -13.55007 -13.30761 -13.20210 -12.86144 -12.78963 -12.44049 -12.35691 -12.28022 -12.21624 -12.07089 -11.36517 -10.93464 -10.82693 -10.54718 -10.35087 -9.94734 -9.79959 -9.76701 -9.66500 -9.58139 -9.17096 -8.73302 -8.65764 -8.15741 -6.92114 -6.02378 -3.50299 0.63851 1.04899 1.99808 3.06544 3.25395 3.29537 3.44565 3.50681 3.69986 3.82903 4.02941 4.16752 4.32777 4.37588 4.44628 4.46966 4.67925 4.76264 4.81259 4.85947 4.96570 5.09808 5.20580 5.24216 5.30155 5.42437 5.47395 5.50755 5.65100 5.79234 5.87445 6.06531 6.10918 6.25614 6.31685 6.37158 6.45710 6.46839 6.53485 6.65566 6.80623 6.88192 7.76135 7.82946 8.00627 8.07272 8.30285 8.57048 8.87224 9.62999 10.04045 11.13114 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.002734 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.457291 B =10237.246219 C =10683.193543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 C -0.269 4.269 4 C 0.406 3.594 5 O -0.478 6.478 6 C -0.291 4.291 7 C 0.570 3.430 8 O -0.512 6.512 9 N -0.721 5.721 10 C 0.164 3.836 11 H 0.090 0.910 12 C -0.141 4.141 13 C 0.147 3.853 14 N -0.603 5.603 15 C -0.265 4.265 16 H 0.084 0.916 17 C 0.030 3.970 18 N -0.909 5.909 19 Si 0.888 3.112 20 H -0.287 1.287 21 H -0.269 1.269 22 H -0.301 1.301 23 C 0.102 3.898 24 C 0.081 3.919 25 H 0.061 0.939 26 O -0.571 6.571 27 C 0.171 3.829 28 N -0.472 5.472 29 C 0.048 3.952 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.388 0.612 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.375 0.625 43 H 0.167 0.833 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.776 1.198 -2.906 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 C -0.293 4.293 4 C 0.292 3.708 5 O -0.359 6.359 6 C -0.302 4.302 7 C 0.357 3.643 8 O -0.386 6.386 9 N -0.373 5.373 10 C 0.060 3.940 11 H 0.108 0.892 12 C -0.181 4.181 13 C 0.020 3.980 14 N -0.328 5.328 15 C -0.394 4.394 16 H 0.102 0.898 17 C -0.170 4.170 18 N -0.551 5.551 19 Si 0.718 3.282 20 H -0.214 1.214 21 H -0.194 1.194 22 H -0.229 1.229 23 C -0.025 4.025 24 C 0.020 3.980 25 H 0.079 0.921 26 O -0.375 6.375 27 C 0.040 3.960 28 N -0.160 5.160 29 C -0.093 4.093 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.169 0.831 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.222 0.778 43 H 0.184 0.816 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.171 2.833 -2.767 29.438 hybrid contribution 0.240 -1.068 -1.165 1.598 sum -28.931 1.766 -3.932 29.250 Atomic orbital electron populations 1.21179 0.88092 1.05043 1.04042 1.20259 0.94820 0.85006 0.95167 1.22289 0.96350 0.97172 1.13485 1.18165 0.88222 0.87953 0.76484 1.90833 1.69927 1.33201 1.41898 1.22624 0.94585 0.95063 1.17968 1.17463 0.85977 0.83778 0.77104 1.90854 1.65744 1.33901 1.48132 1.45945 1.07655 1.07351 1.76301 1.20918 0.78487 0.97623 0.96952 0.89215 1.22350 0.98911 1.01902 0.94956 1.20928 0.90611 0.89024 0.97389 1.44278 1.52214 1.22901 1.13411 1.18874 1.07325 1.17516 0.95673 0.89821 1.25530 0.95913 0.97245 0.98307 1.69778 1.26646 1.20602 1.38039 0.86856 0.76478 0.80061 0.84778 1.21419 1.19377 1.22891 1.22056 0.90860 1.00676 0.88904 1.22791 0.96143 0.96400 0.82678 0.92112 1.86465 1.77558 1.45087 1.28418 1.22220 0.82086 0.99978 0.91669 1.42533 1.05280 1.07181 1.60986 1.22545 0.97851 0.84416 1.04487 0.89375 0.90133 0.88886 0.83081 0.77807 0.91184 0.91739 0.91126 0.95322 0.92602 0.94725 0.90482 0.77783 0.81633 0.89953 0.88754 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 9.33 36.01 0.34 0.08 16 2 C 0.15 0.97 6.64 -82.13 -0.54 0.43 16 3 C -0.27 -2.77 9.57 -39.47 -0.38 -3.15 16 4 C 0.41 6.37 6.96 -34.69 -0.24 6.13 16 5 O -0.48 -9.98 16.41 -15.18 -0.25 -10.23 16 6 C -0.29 -4.02 6.05 -102.72 -0.62 -4.64 16 7 C 0.57 9.88 7.74 -12.58 -0.10 9.78 16 8 O -0.51 -11.52 15.24 -14.76 -0.22 -11.75 16 9 N -0.72 -10.65 4.87 -54.88 -0.27 -10.92 16 10 C 0.16 2.89 2.12 -67.89 -0.14 2.75 16 11 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 12 C -0.14 -2.51 5.64 -26.83 -0.15 -2.66 16 13 C 0.15 3.01 6.49 -3.93 -0.03 2.98 16 14 N -0.60 -14.13 2.65 -172.58 -0.46 -14.59 16 15 C -0.27 -7.26 9.98 -15.06 -0.15 -7.41 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C 0.03 0.85 5.29 -17.43 -0.09 0.76 16 18 N -0.91 -27.27 13.97 55.49 0.78 -26.49 16 19 Si 0.89 22.25 24.39 -169.99 -4.15 18.10 16 20 H -0.29 -6.75 6.57 56.52 0.37 -6.38 16 21 H -0.27 -6.82 6.85 56.52 0.39 -6.43 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 23 C 0.10 2.16 3.84 -3.71 -0.01 2.15 16 24 C 0.08 1.39 3.14 -26.61 -0.08 1.31 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 O -0.57 -8.79 13.16 -35.23 -0.46 -9.25 16 27 C 0.17 1.37 9.79 -16.55 -0.16 1.21 16 28 N -0.47 -2.58 2.97 -119.75 -0.36 -2.94 16 29 C 0.05 0.04 9.99 59.84 0.60 0.64 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.08 0.01 6.03 -51.93 -0.31 -0.30 16 32 H 0.09 0.16 7.97 -51.93 -0.41 -0.26 16 33 H 0.15 1.33 8.00 -52.49 -0.42 0.91 16 34 H 0.39 4.29 6.68 -40.82 -0.27 4.02 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.03 0.77 7.02 -51.93 -0.36 0.41 16 41 H 0.08 1.71 5.17 -51.93 -0.27 1.44 16 42 H 0.38 4.39 9.08 45.56 0.41 4.81 16 43 H 0.17 0.79 6.29 -52.48 -0.33 0.46 16 44 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.09 -0.04 7.87 -51.92 -0.41 -0.44 16 46 H 0.09 -0.08 5.93 -51.93 -0.31 -0.39 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -41.17 367.50 -7.25 -48.42 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.63 Total: 3.75 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.77 Total: 10.36 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.30 Total: -54.94 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.94 Total: -31.23 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -41.17 -7.25 -48.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.204 kcal (2) G-P(sol) polarization free energy of solvation -41.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds