Wall clock time and date at job start Tue Mar 31 2020 19:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34871 * 119.10187 * 2 1 4 4 C 1.41664 * 119.33944 * 180.02562 * 3 2 1 5 5 O 1.22092 * 121.06695 * 179.97438 * 4 3 2 6 6 C 1.47089 * 117.86512 * 0.02562 * 4 3 2 7 7 C 1.47298 * 120.88020 * 179.97438 * 6 4 3 8 8 O 1.21619 * 120.00308 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99659 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99739 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46038 * 324.97571 * 10 9 7 12 12 C 1.53040 * 109.46202 * 84.93390 * 10 9 7 13 13 C 1.52761 * 109.38481 * 181.25979 * 12 10 9 14 14 N 1.46926 * 109.00981 * 305.58864 * 13 12 10 15 15 C 1.36935 * 120.62957 * 233.58548 * 14 13 12 16 16 H 1.07998 * 119.99875 * 36.78926 * 15 14 13 17 17 C 1.38812 * 119.99964 * 216.79753 * 15 14 13 18 18 N 1.31621 * 120.00083 * 193.72420 * 17 15 14 19 19 Si 1.86798 * 119.99873 * 13.71990 * 17 15 14 20 20 H 1.48500 * 109.47173 * 273.14886 * 19 17 15 21 21 H 1.48503 * 109.47312 * 33.14922 * 19 17 15 22 22 H 1.48499 * 109.47089 * 153.14987 * 19 17 15 23 23 C 1.46926 * 118.73554 * 53.30715 * 14 13 12 24 24 C 1.53043 * 109.45965 * 205.00138 * 10 9 7 25 25 H 1.08994 * 109.49529 * 298.56538 * 24 10 9 26 26 O 1.42902 * 109.49577 * 58.66307 * 24 10 9 27 27 C 1.37987 * 118.23744 * 0.27353 * 6 4 3 28 28 N 1.34342 * 120.37348 * 359.46707 * 27 6 4 29 29 C 1.46494 * 118.81186 * 180.26545 * 28 27 6 30 30 H 1.08991 * 109.47199 * 96.49572 * 1 2 3 31 31 H 1.09000 * 109.46623 * 216.49828 * 1 2 3 32 32 H 1.09001 * 109.46959 * 336.49565 * 1 2 3 33 33 H 1.08000 * 120.32607 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00550 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.49661 * 301.33829 * 12 10 9 36 36 H 1.09001 * 109.49877 * 61.43333 * 12 10 9 37 37 H 1.09001 * 109.51144 * 185.70476 * 13 12 10 38 38 H 1.08999 * 109.43258 * 65.42745 * 13 12 10 39 39 H 0.97000 * 119.99982 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.58677 * 66.43343 * 23 14 13 41 41 H 1.09006 * 109.58317 * 186.71571 * 23 14 13 42 42 H 0.96703 * 113.99396 * 179.83287 * 26 24 10 43 43 H 1.08006 * 119.81475 * 179.70336 * 27 6 4 44 44 H 1.08996 * 109.47046 * 264.66828 * 29 28 27 45 45 H 1.09007 * 109.46884 * 24.66421 * 29 28 27 46 46 H 1.08999 * 109.47457 * 144.66044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1132 -0.0017 7 6 5.7437 -0.1845 -0.0029 8 8 6.4022 0.8380 -0.0025 9 7 6.3602 -1.3831 -0.0044 10 6 7.8235 -1.4541 -0.0050 11 1 8.2268 -0.6304 -0.5941 12 6 8.3395 -1.3531 1.4322 13 6 9.8665 -1.3958 1.4269 14 7 10.3091 -2.5992 0.7096 15 6 11.1754 -3.4823 1.2968 16 1 11.1018 -3.6887 2.3543 17 6 12.1483 -4.1122 0.5328 18 7 12.7988 -5.1478 1.0193 19 14 12.5343 -3.4899 -1.1856 20 1 11.6138 -4.1272 -2.1612 21 1 12.3588 -2.0159 -1.2294 22 1 13.9371 -3.8319 -1.5325 23 6 9.7997 -2.8403 -0.6473 24 6 8.2691 -2.7844 -0.6166 25 1 7.8870 -3.6080 -0.0136 26 8 7.7611 -2.8912 -1.9479 27 6 3.5077 -1.2617 -0.0080 28 7 2.1665 -1.1847 -0.0021 29 6 1.3881 -2.4257 -0.0031 30 1 -0.3633 -0.1162 -1.0210 31 1 -0.3632 -0.8261 0.6113 32 1 -0.3633 0.9424 0.4099 33 1 1.6137 2.1083 -0.0004 34 1 5.8351 -2.1986 -0.0051 35 1 8.0021 -0.4159 1.8749 36 1 7.9567 -2.1903 2.0159 37 1 10.2334 -1.4262 2.4528 38 1 10.2523 -0.5085 0.9248 39 1 13.4784 -5.5882 0.4853 40 1 10.1800 -2.0733 -1.3220 41 1 10.1247 -3.8226 -0.9904 42 1 8.0075 -3.7107 -2.3983 43 1 3.9900 -2.2280 -0.0138 44 1 1.1099 -2.6792 -1.0260 45 1 1.9880 -3.2312 0.4205 46 1 0.4873 -2.2902 0.5956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090341024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:07 Heat of formation + Delta-G solvation = -85.092299 kcal Electronic energy + Delta-G solvation = -29497.568070 eV Core-core repulsion = 25387.424457 eV Total energy + Delta-G solvation = -4110.143613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23834 -40.92976 -39.56346 -38.77234 -37.02637 -35.82667 -34.60957 -34.04122 -33.54005 -31.80708 -30.70658 -29.05948 -27.67480 -26.83967 -25.24939 -24.56626 -23.56935 -22.62663 -21.67148 -21.31788 -19.42955 -18.79606 -18.54015 -18.28509 -17.43530 -17.25532 -16.97660 -16.86003 -16.51760 -16.11632 -15.84698 -15.61517 -15.30159 -15.06200 -14.82319 -14.72210 -14.66659 -14.20965 -14.14658 -13.96248 -13.83971 -13.83068 -13.65218 -13.32206 -13.05276 -12.70388 -12.66410 -12.54713 -12.51288 -12.38019 -12.05935 -11.75825 -11.45496 -11.18755 -11.06099 -10.73146 -10.49683 -10.31581 -10.07857 -9.05406 -8.88330 -8.20980 -5.66041 -0.20249 0.32970 1.25001 1.40486 1.47161 1.49730 1.90926 2.08608 2.36986 2.79429 2.91909 3.12817 3.22527 3.31246 3.59980 3.63464 3.78205 3.81137 3.99901 4.08519 4.19483 4.23524 4.27412 4.36122 4.43895 4.47914 4.57743 4.68655 4.72694 4.73853 4.80335 4.84078 4.87419 4.91511 4.92571 5.00456 5.16221 5.26262 5.33553 5.45870 5.71495 5.79923 5.88308 6.12946 6.63164 6.75843 6.89863 7.10180 7.36626 7.52595 7.97963 8.98169 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.002734 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.457291 B =10237.246219 C =10683.193543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.187 3.813 3 C -0.305 4.305 4 C 0.380 3.620 5 O -0.569 6.569 6 C -0.351 4.351 7 C 0.567 3.433 8 O -0.580 6.580 9 N -0.701 5.701 10 C 0.168 3.832 11 H 0.054 0.946 12 C -0.126 4.126 13 C 0.143 3.857 14 N -0.613 5.613 15 C -0.253 4.253 16 H 0.056 0.944 17 C -0.019 4.019 18 N -0.951 5.951 19 Si 0.942 3.058 20 H -0.258 1.258 21 H -0.279 1.279 22 H -0.308 1.308 23 C 0.097 3.903 24 C 0.103 3.897 25 H 0.083 0.917 26 O -0.570 6.570 27 C 0.223 3.777 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.395 0.605 43 H 0.211 0.789 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.699 -2.214 -3.948 34.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 C -0.328 4.328 4 C 0.274 3.726 5 O -0.458 6.458 6 C -0.362 4.362 7 C 0.357 3.643 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.063 3.937 11 H 0.072 0.928 12 C -0.166 4.166 13 C 0.018 3.982 14 N -0.339 5.339 15 C -0.383 4.383 16 H 0.074 0.926 17 C -0.215 4.215 18 N -0.596 5.596 19 Si 0.771 3.229 20 H -0.184 1.184 21 H -0.204 1.204 22 H -0.236 1.236 23 C -0.029 4.029 24 C 0.042 3.958 25 H 0.101 0.899 26 O -0.377 6.377 27 C 0.088 3.912 28 N -0.138 5.138 29 C -0.107 4.107 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.245 0.755 43 H 0.227 0.773 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -34.222 -0.677 -3.836 34.443 hybrid contribution 1.522 -0.177 -0.808 1.732 sum -32.699 -0.854 -4.644 33.039 Atomic orbital electron populations 1.21403 0.83854 1.06848 1.06082 1.20849 0.97074 0.83904 0.90219 1.22140 0.93944 0.99526 1.17167 1.18994 0.90442 0.87850 0.75348 1.90774 1.71778 1.35661 1.47615 1.22162 0.92959 0.96468 1.24579 1.18033 0.87498 0.83191 0.75581 1.90812 1.67469 1.36255 1.51476 1.45589 1.06400 1.07770 1.75612 1.20638 0.80215 0.96792 0.96085 0.92810 1.22137 0.96560 1.02277 0.95586 1.20993 0.92645 0.87673 0.96883 1.44341 1.52157 1.23128 1.14255 1.18783 1.07709 1.17097 0.94703 0.92650 1.26061 0.96097 0.97529 1.01796 1.69886 1.27844 1.22142 1.39680 0.85976 0.76299 0.78896 0.81731 1.18387 1.20407 1.23642 1.22092 0.93897 0.99781 0.87150 1.22353 0.92963 0.96464 0.84064 0.89906 1.86453 1.76953 1.46786 1.27485 1.22633 0.82969 0.99500 0.86095 1.43205 1.04926 1.09057 1.56641 1.23142 0.98588 0.82090 1.06874 0.87133 0.86767 0.88437 0.82836 0.75185 0.91704 0.90080 0.91290 0.96197 0.92627 0.95925 0.91040 0.75470 0.77269 0.87665 0.86415 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.21 9.33 71.24 0.66 0.87 16 2 C 0.19 1.66 6.64 41.21 0.27 1.93 16 3 C -0.30 -6.29 9.57 22.34 0.21 -6.07 16 4 C 0.38 12.88 6.96 25.44 0.18 13.05 16 5 O -0.57 -26.89 16.41 13.52 0.22 -26.67 16 6 C -0.35 -9.69 6.05 -18.63 -0.11 -9.81 16 7 C 0.57 20.32 7.74 86.63 0.67 20.99 16 8 O -0.58 -28.43 15.24 15.05 0.23 -28.20 16 9 N -0.70 -19.78 4.87 -445.78 -2.17 -21.96 16 10 C 0.17 5.84 2.12 45.02 0.10 5.94 16 11 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 12 C -0.13 -4.46 5.64 30.53 0.17 -4.29 16 13 C 0.14 6.01 6.49 86.22 0.56 6.57 16 14 N -0.61 -28.73 2.65 -699.92 -1.85 -30.58 16 15 C -0.25 -14.02 9.98 84.03 0.84 -13.18 16 16 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 17 C -0.02 -1.06 5.29 84.86 0.45 -0.61 16 18 N -0.95 -57.86 13.97 21.65 0.30 -57.56 16 19 Si 0.94 46.06 24.39 68.60 1.67 47.74 16 20 H -0.26 -11.33 6.57 99.48 0.65 -10.67 16 21 H -0.28 -13.93 6.85 99.48 0.68 -13.25 16 22 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 23 C 0.10 4.00 3.84 86.36 0.33 4.33 16 24 C 0.10 3.29 3.14 30.67 0.10 3.39 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 O -0.57 -15.66 13.16 -148.98 -1.96 -17.62 16 27 C 0.22 2.67 9.79 84.25 0.83 3.49 16 28 N -0.46 -2.48 2.97 -532.77 -1.58 -4.06 16 29 C 0.03 -0.19 9.99 127.77 1.28 1.08 16 30 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.11 -0.85 6.03 -2.39 -0.01 -0.87 16 32 H 0.10 -0.11 7.97 -2.39 -0.02 -0.12 16 33 H 0.15 2.89 8.00 -2.91 -0.02 2.86 16 34 H 0.41 7.48 6.68 -92.71 -0.62 6.86 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.86 7.93 -2.39 -0.02 2.84 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.02 1.00 7.02 -2.39 -0.02 0.98 16 41 H 0.07 3.02 5.17 -2.38 -0.01 3.01 16 42 H 0.40 7.61 9.08 -74.05 -0.67 6.94 16 43 H 0.21 0.62 6.29 -2.91 -0.02 0.60 16 44 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H 0.12 -1.09 7.87 -2.38 -0.02 -1.11 16 46 H 0.12 -1.25 5.93 -2.39 -0.01 -1.27 16 Total: -1.00 -103.22 367.50 1.06 -102.17 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.33 Total: 9.05 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 6.53 Total: 27.69 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -5.30 Total: -114.15 kcal Atomic # 8 Polarization: -70.99 SS G_CDS: -1.51 Total: -72.50 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Total: -103.22 1.06 -102.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.073 kcal (2) G-P(sol) polarization free energy of solvation -103.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds