Wall clock time and date at job start Tue Mar 31 2020 19:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34874 * 119.09793 * 2 1 4 4 C 1.41667 * 119.33558 * 179.72403 * 3 2 1 5 5 O 1.22088 * 121.06511 * 180.29874 * 4 3 2 6 6 C 1.47101 * 117.86749 * 0.27646 * 4 3 2 7 7 C 1.47282 * 120.88163 * 179.97438 * 6 4 3 8 8 O 1.21620 * 120.00151 * 0.02562 * 7 6 4 9 9 N 1.34781 * 120.00198 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00238 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46061 * 35.00075 * 10 9 7 12 12 C 1.53041 * 109.46090 * 275.02531 * 10 9 7 13 13 C 1.53163 * 109.32725 * 301.36280 * 12 10 9 14 14 N 1.46925 * 108.76807 * 305.35161 * 13 12 10 15 15 C 1.36936 * 120.63186 * 233.63039 * 14 13 12 16 16 H 1.08003 * 119.99923 * 151.80362 * 15 14 13 17 17 C 1.38807 * 120.00247 * 331.81202 * 15 14 13 18 18 N 1.31618 * 119.99972 * 343.07997 * 17 15 14 19 19 Si 1.86802 * 120.00314 * 163.08788 * 17 15 14 20 20 H 1.48501 * 109.47063 * 59.99803 * 19 17 15 21 21 H 1.48498 * 109.47025 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47136 * 299.99660 * 19 17 15 23 23 C 1.46930 * 118.73652 * 53.61060 * 14 13 12 24 24 C 1.53038 * 109.45737 * 154.97428 * 10 9 7 25 25 H 1.09005 * 109.49604 * 178.63618 * 24 10 9 26 26 O 1.42903 * 109.49928 * 298.70098 * 24 10 9 27 27 C 1.37985 * 118.23255 * 0.02562 * 6 4 3 28 28 N 1.34349 * 120.37643 * 0.02562 * 27 6 4 29 29 C 1.46495 * 118.80675 * 180.02562 * 28 27 6 30 30 H 1.08997 * 109.47497 * 89.99890 * 1 2 3 31 31 H 1.08999 * 109.46909 * 209.99944 * 1 2 3 32 32 H 1.09005 * 109.47528 * 329.99758 * 1 2 3 33 33 H 1.07996 * 120.33074 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99686 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.49814 * 61.29213 * 12 10 9 36 36 H 1.08992 * 109.49829 * 181.39420 * 12 10 9 37 37 H 1.09000 * 109.58976 * 185.57083 * 13 12 10 38 38 H 1.09003 * 109.59632 * 65.13568 * 13 12 10 39 39 H 0.97002 * 120.00294 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.58351 * 186.60313 * 23 14 13 41 41 H 1.08997 * 109.70456 * 66.25153 * 23 14 13 42 42 H 0.96698 * 113.99828 * 180.02562 * 26 24 10 43 43 H 1.08003 * 119.81423 * 179.97438 * 27 6 4 44 44 H 1.08994 * 109.47722 * 89.99741 * 29 28 27 45 45 H 1.09001 * 109.47332 * 210.00240 * 29 28 27 46 46 H 1.09003 * 109.47011 * 329.99817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0059 5 8 4.2051 2.2328 0.0116 6 6 4.2725 -0.1131 0.0056 7 6 5.7436 -0.1845 0.0110 8 8 6.4020 0.8381 0.0163 9 7 6.3602 -1.3830 0.0112 10 6 7.8234 -1.4539 0.0171 11 1 8.2245 -0.6319 0.6100 12 6 8.3448 -1.3495 -1.4179 13 6 7.7521 -2.4858 -2.2566 14 7 8.0508 -3.7648 -1.5980 15 6 8.6696 -4.7752 -2.2844 16 1 9.2818 -5.4911 -1.7560 17 6 8.5103 -4.8794 -3.6594 18 7 7.5279 -4.2403 -4.2583 19 14 9.6901 -5.9267 -4.6598 20 1 9.6296 -7.3321 -4.1841 21 1 9.3062 -5.8727 -6.0932 22 1 11.0721 -5.4081 -4.4971 23 6 7.6732 -3.9388 -0.1888 24 6 8.2667 -2.7858 0.6267 25 1 9.3548 -2.8497 0.6093 26 8 7.8056 -2.8696 1.9767 27 6 3.5077 -1.2616 -0.0010 28 7 2.1664 -1.1846 -0.0074 29 6 1.3881 -2.4257 -0.0137 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6136 2.1084 -0.0004 34 1 5.8350 -2.1986 0.0073 35 1 8.0485 -0.3908 -1.8438 36 1 9.4320 -1.4270 -1.4165 37 1 8.1959 -2.4751 -3.2521 38 1 6.6724 -2.3582 -2.3341 39 1 7.4163 -4.3134 -5.2191 40 1 8.0649 -4.8869 0.1800 41 1 6.5873 -3.9312 -0.0956 42 1 8.0514 -3.6897 2.4261 43 1 3.9900 -2.2280 -0.0018 44 1 1.1900 -2.7357 1.0122 45 1 0.4436 -2.2597 -0.5319 46 1 1.9516 -3.2053 -0.5264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090341025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:11 Heat of formation + Delta-G solvation = -51.999609 kcal Electronic energy + Delta-G solvation = -30119.190924 eV Core-core repulsion = 26010.482318 eV Total energy + Delta-G solvation = -4108.708606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27558 -39.53736 -38.08166 -37.25928 -35.42013 -33.99899 -33.56204 -32.74020 -31.55308 -30.15540 -28.78531 -27.97663 -27.04660 -25.32358 -24.26905 -22.48162 -22.10776 -21.60167 -20.67678 -18.74466 -18.22024 -17.55088 -17.02389 -16.54752 -16.25670 -16.18208 -15.80758 -15.10325 -14.91383 -14.51739 -14.40271 -14.22760 -13.86008 -13.75453 -13.70246 -13.49845 -13.34970 -13.14633 -13.10692 -12.67289 -12.55766 -12.22338 -12.17509 -11.99606 -11.92551 -11.63201 -11.18880 -10.89695 -10.62815 -10.42750 -10.19350 -9.96883 -9.81025 -9.64220 -9.57154 -9.40425 -8.96946 -8.55894 -8.45986 -7.94214 -6.79734 -5.89641 -3.34413 0.86637 1.25707 2.22820 3.28528 3.31588 3.38646 3.39618 3.58063 3.91621 4.05240 4.27715 4.35568 4.42558 4.53338 4.58706 4.69466 4.91117 4.93781 5.01550 5.05785 5.26536 5.29472 5.34414 5.40104 5.48564 5.59873 5.63101 5.70643 5.74452 6.02862 6.11811 6.27096 6.32540 6.44501 6.47811 6.59620 6.66141 6.68618 6.75988 7.06921 7.29119 7.59069 7.69155 7.92803 8.03701 8.26907 8.33499 8.81631 9.08827 9.71128 10.26739 11.18208 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003475 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.472325 B = 8054.833890 C = 8782.916756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.272 4.272 4 C 0.408 3.592 5 O -0.482 6.482 6 C -0.291 4.291 7 C 0.572 3.428 8 O -0.521 6.521 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.154 4.154 13 C 0.173 3.827 14 N -0.586 5.586 15 C -0.261 4.261 16 H 0.065 0.935 17 C 0.008 3.992 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.121 3.879 24 C 0.075 3.925 25 H 0.066 0.934 26 O -0.570 6.570 27 C 0.174 3.826 28 N -0.472 5.472 29 C 0.048 3.952 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.392 0.608 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.372 0.628 43 H 0.167 0.833 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 0.164 10.060 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 C -0.296 4.296 4 C 0.294 3.706 5 O -0.363 6.363 6 C -0.302 4.302 7 C 0.359 3.641 8 O -0.396 6.396 9 N -0.363 5.363 10 C 0.064 3.936 11 H 0.098 0.902 12 C -0.195 4.195 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.390 4.390 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.007 4.007 24 C 0.014 3.986 25 H 0.084 0.916 26 O -0.374 6.374 27 C 0.044 3.956 28 N -0.159 5.159 29 C -0.093 4.093 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.168 0.832 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.218 0.782 43 H 0.184 0.816 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.653 1.895 9.728 18.527 hybrid contribution 0.506 -1.802 -0.541 1.948 sum -15.147 0.093 9.187 17.715 Atomic orbital electron populations 1.21156 0.88198 1.04762 1.04228 1.20264 0.94759 0.85077 0.95013 1.22250 0.96373 0.97098 1.13907 1.18146 0.88180 0.87933 0.76332 1.90809 1.69976 1.33221 1.42292 1.22596 0.94671 0.94938 1.17980 1.17413 0.85962 0.83754 0.76974 1.90813 1.65809 1.34030 1.48979 1.45828 1.07468 1.07485 1.75521 1.20776 0.79564 0.96339 0.96904 0.90244 1.22588 1.00911 1.01186 0.94766 1.20776 0.96744 0.81539 0.96151 1.44005 1.69145 1.12032 1.05895 1.19108 1.22363 1.07363 0.90170 0.91684 1.25043 0.97109 0.99134 0.97889 1.70014 1.29061 1.45650 1.09550 0.86358 0.81053 0.80053 0.79200 1.20880 1.21574 1.20882 1.21508 0.96334 0.95555 0.87258 1.22768 0.98114 0.96577 0.81109 0.91569 1.86506 1.80984 1.43773 1.26154 1.22253 0.82047 1.00139 0.91206 1.42543 1.05316 1.07127 1.60901 1.22533 0.97830 0.84631 1.04320 0.89283 0.90298 0.88952 0.83193 0.77214 0.91679 0.91530 0.89317 0.96132 0.93444 0.92339 0.96424 0.78177 0.81607 0.90058 0.88812 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 8.95 36.00 0.32 -0.18 16 2 C 0.15 1.34 6.64 -82.13 -0.55 0.79 16 3 C -0.27 -3.36 9.57 -39.47 -0.38 -3.74 16 4 C 0.41 7.28 6.96 -34.68 -0.24 7.04 16 5 O -0.48 -10.91 16.41 -15.18 -0.25 -11.16 16 6 C -0.29 -4.82 6.05 -102.72 -0.62 -5.44 16 7 C 0.57 11.36 7.74 -12.58 -0.10 11.27 16 8 O -0.52 -12.64 15.23 -14.76 -0.22 -12.86 16 9 N -0.71 -12.61 4.11 -54.89 -0.23 -12.84 16 10 C 0.17 3.18 2.47 -67.89 -0.17 3.02 16 11 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 12 C -0.15 -3.16 5.77 -26.63 -0.15 -3.32 16 13 C 0.17 4.03 5.05 -3.73 -0.02 4.01 16 14 N -0.59 -13.62 2.99 -172.34 -0.52 -14.13 16 15 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 16 H 0.07 1.64 7.89 -52.48 -0.41 1.22 16 17 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16 18 N -0.90 -24.93 11.20 55.49 0.62 -24.31 16 19 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.12 2.25 5.84 -3.71 -0.02 2.23 16 24 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 O -0.57 -8.48 13.21 -35.23 -0.47 -8.95 16 27 C 0.17 1.98 9.79 -16.54 -0.16 1.82 16 28 N -0.47 -3.93 2.97 -119.75 -0.36 -4.29 16 29 C 0.05 0.18 9.62 59.84 0.58 0.76 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.16 6.50 -51.93 -0.34 -0.17 16 32 H 0.09 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.39 6.18 4.95 -40.82 -0.20 5.98 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 38 H 0.02 0.50 7.74 -51.93 -0.40 0.09 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.02 0.32 6.64 -51.93 -0.35 -0.02 16 42 H 0.37 3.88 9.08 45.56 0.41 4.29 16 43 H 0.17 1.54 6.35 -52.48 -0.33 1.21 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 0.18 6.39 -51.93 -0.33 -0.15 16 46 H 0.10 0.33 7.96 -51.93 -0.41 -0.08 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -38.60 369.55 -8.28 -46.88 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.57 Total: 7.59 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -1.83 Total: 12.68 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.48 Total: -55.57 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.94 Total: -32.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.60 -8.28 -46.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.123 kcal (2) G-P(sol) polarization free energy of solvation -38.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds