Wall clock time and date at job start Tue Mar 31 2020 19:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34874 * 119.09793 * 2 1 4 4 C 1.41667 * 119.33558 * 179.72403 * 3 2 1 5 5 O 1.22088 * 121.06511 * 180.29874 * 4 3 2 6 6 C 1.47101 * 117.86749 * 0.27646 * 4 3 2 7 7 C 1.47282 * 120.88163 * 179.97438 * 6 4 3 8 8 O 1.21620 * 120.00151 * 0.02562 * 7 6 4 9 9 N 1.34781 * 120.00198 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00238 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46061 * 35.00075 * 10 9 7 12 12 C 1.53041 * 109.46090 * 275.02531 * 10 9 7 13 13 C 1.53163 * 109.32725 * 301.36280 * 12 10 9 14 14 N 1.46925 * 108.76807 * 305.35161 * 13 12 10 15 15 C 1.36936 * 120.63186 * 233.63039 * 14 13 12 16 16 H 1.08003 * 119.99923 * 151.80362 * 15 14 13 17 17 C 1.38807 * 120.00247 * 331.81202 * 15 14 13 18 18 N 1.31618 * 119.99972 * 343.07997 * 17 15 14 19 19 Si 1.86802 * 120.00314 * 163.08788 * 17 15 14 20 20 H 1.48501 * 109.47063 * 59.99803 * 19 17 15 21 21 H 1.48498 * 109.47025 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47136 * 299.99660 * 19 17 15 23 23 C 1.46930 * 118.73652 * 53.61060 * 14 13 12 24 24 C 1.53038 * 109.45737 * 154.97428 * 10 9 7 25 25 H 1.09005 * 109.49604 * 178.63618 * 24 10 9 26 26 O 1.42903 * 109.49928 * 298.70098 * 24 10 9 27 27 C 1.37985 * 118.23255 * 0.02562 * 6 4 3 28 28 N 1.34349 * 120.37643 * 0.02562 * 27 6 4 29 29 C 1.46495 * 118.80675 * 180.02562 * 28 27 6 30 30 H 1.08997 * 109.47497 * 89.99890 * 1 2 3 31 31 H 1.08999 * 109.46909 * 209.99944 * 1 2 3 32 32 H 1.09005 * 109.47528 * 329.99758 * 1 2 3 33 33 H 1.07996 * 120.33074 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99686 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.49814 * 61.29213 * 12 10 9 36 36 H 1.08992 * 109.49829 * 181.39420 * 12 10 9 37 37 H 1.09000 * 109.58976 * 185.57083 * 13 12 10 38 38 H 1.09003 * 109.59632 * 65.13568 * 13 12 10 39 39 H 0.97002 * 120.00294 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.58351 * 186.60313 * 23 14 13 41 41 H 1.08997 * 109.70456 * 66.25153 * 23 14 13 42 42 H 0.96698 * 113.99828 * 180.02562 * 26 24 10 43 43 H 1.08003 * 119.81423 * 179.97438 * 27 6 4 44 44 H 1.08994 * 109.47722 * 89.99741 * 29 28 27 45 45 H 1.09001 * 109.47332 * 210.00240 * 29 28 27 46 46 H 1.09003 * 109.47011 * 329.99817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0059 5 8 4.2051 2.2328 0.0116 6 6 4.2725 -0.1131 0.0056 7 6 5.7436 -0.1845 0.0110 8 8 6.4020 0.8381 0.0163 9 7 6.3602 -1.3830 0.0112 10 6 7.8234 -1.4539 0.0171 11 1 8.2245 -0.6319 0.6100 12 6 8.3448 -1.3495 -1.4179 13 6 7.7521 -2.4858 -2.2566 14 7 8.0508 -3.7648 -1.5980 15 6 8.6696 -4.7752 -2.2844 16 1 9.2818 -5.4911 -1.7560 17 6 8.5103 -4.8794 -3.6594 18 7 7.5279 -4.2403 -4.2583 19 14 9.6901 -5.9267 -4.6598 20 1 9.6296 -7.3321 -4.1841 21 1 9.3062 -5.8727 -6.0932 22 1 11.0721 -5.4081 -4.4971 23 6 7.6732 -3.9388 -0.1888 24 6 8.2667 -2.7858 0.6267 25 1 9.3548 -2.8497 0.6093 26 8 7.8056 -2.8696 1.9767 27 6 3.5077 -1.2616 -0.0010 28 7 2.1664 -1.1846 -0.0074 29 6 1.3881 -2.4257 -0.0137 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6136 2.1084 -0.0004 34 1 5.8350 -2.1986 0.0073 35 1 8.0485 -0.3908 -1.8438 36 1 9.4320 -1.4270 -1.4165 37 1 8.1959 -2.4751 -3.2521 38 1 6.6724 -2.3582 -2.3341 39 1 7.4163 -4.3134 -5.2191 40 1 8.0649 -4.8869 0.1800 41 1 6.5873 -3.9312 -0.0956 42 1 8.0514 -3.6897 2.4261 43 1 3.9900 -2.2280 -0.0018 44 1 1.1900 -2.7357 1.0122 45 1 0.4436 -2.2597 -0.5319 46 1 1.9516 -3.2053 -0.5264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090341025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:10 Heat of formation + Delta-G solvation = -81.819659 kcal Electronic energy + Delta-G solvation = -30120.484018 eV Core-core repulsion = 26010.482318 eV Total energy + Delta-G solvation = -4110.001701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.25085 -40.99563 -39.43525 -38.67170 -36.93592 -35.58858 -34.52366 -33.82676 -33.20409 -31.75922 -30.25403 -28.92596 -27.68588 -27.12285 -25.27881 -24.06723 -23.66758 -22.98975 -21.83507 -20.35696 -19.40904 -18.85370 -18.37403 -17.96904 -17.29314 -17.01501 -16.94110 -16.79063 -16.52737 -15.96743 -15.81306 -15.62562 -15.44698 -14.99415 -14.77197 -14.69096 -14.35705 -14.19502 -13.89684 -13.84814 -13.78696 -13.52484 -13.33641 -13.23928 -12.99558 -12.70546 -12.64494 -12.56668 -12.36996 -12.22027 -11.98317 -11.83355 -11.30420 -11.14164 -10.99736 -10.49999 -10.48940 -10.31231 -10.02498 -9.05465 -8.69666 -7.87781 -5.33988 -0.20942 0.31635 1.46352 1.48727 1.53071 1.57791 1.92342 2.18284 2.50802 2.79489 3.15073 3.21733 3.29294 3.59251 3.63246 3.66277 3.81794 3.89589 4.06783 4.18448 4.25870 4.34142 4.38289 4.38608 4.49504 4.53264 4.67493 4.69612 4.73819 4.82439 4.86791 4.88770 4.95312 5.05328 5.12656 5.13888 5.30393 5.40788 5.54194 5.64279 5.69143 5.69844 5.79618 6.36597 6.62129 6.92325 7.08819 7.13013 7.36172 7.81945 8.33793 9.18208 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003475 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.472325 B = 8054.833890 C = 8782.916756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.187 3.813 3 C -0.303 4.303 4 C 0.384 3.616 5 O -0.566 6.566 6 C -0.349 4.349 7 C 0.567 3.433 8 O -0.581 6.581 9 N -0.698 5.698 10 C 0.169 3.831 11 H 0.063 0.937 12 C -0.142 4.142 13 C 0.189 3.811 14 N -0.599 5.599 15 C -0.265 4.265 16 H 0.074 0.926 17 C -0.043 4.043 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.283 1.283 23 C 0.122 3.878 24 C 0.097 3.903 25 H 0.069 0.931 26 O -0.570 6.570 27 C 0.217 3.783 28 N -0.456 5.456 29 C 0.031 3.969 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.007 0.993 39 H 0.249 0.751 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.396 0.604 43 H 0.195 0.805 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.080 -3.599 11.494 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 C -0.326 4.326 4 C 0.277 3.723 5 O -0.455 6.455 6 C -0.360 4.360 7 C 0.356 3.644 8 O -0.461 6.461 9 N -0.350 5.350 10 C 0.064 3.936 11 H 0.081 0.919 12 C -0.183 4.183 13 C 0.063 3.937 14 N -0.324 5.324 15 C -0.394 4.394 16 H 0.091 0.909 17 C -0.239 4.239 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.197 1.197 21 H -0.225 1.225 22 H -0.209 1.209 23 C -0.005 4.005 24 C 0.036 3.964 25 H 0.086 0.914 26 O -0.377 6.377 27 C 0.083 3.917 28 N -0.139 5.139 29 C -0.107 4.107 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.177 0.823 34 H 0.241 0.759 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.246 0.754 43 H 0.212 0.788 44 H 0.128 0.872 45 H 0.143 0.857 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.737 -1.980 11.214 21.926 hybrid contribution 1.245 -0.827 -0.912 1.751 sum -17.492 -2.806 10.301 20.493 Atomic orbital electron populations 1.21394 0.83576 1.07052 1.06104 1.20937 0.97210 0.83763 0.90178 1.22140 0.93792 0.99560 1.17142 1.18928 0.90474 0.87551 0.75318 1.90750 1.71759 1.35373 1.47614 1.22266 0.93259 0.96510 1.23974 1.17991 0.87490 0.83242 0.75646 1.90764 1.67396 1.35980 1.51951 1.45660 1.06999 1.07462 1.74922 1.20655 0.80299 0.97278 0.95408 0.91890 1.22404 1.00916 0.99234 0.95723 1.20418 0.95557 0.82772 0.94937 1.44126 1.69416 1.11313 1.07555 1.19467 1.22088 1.07287 0.90605 0.90881 1.25723 0.98476 1.00730 0.98992 1.70152 1.30719 1.47486 1.09163 0.85423 0.79004 0.79172 0.77305 1.19657 1.22491 1.20949 1.21669 0.97309 0.96850 0.84632 1.22338 0.97940 0.94202 0.81966 0.91356 1.86478 1.80888 1.45674 1.24700 1.22473 0.83314 0.99295 0.86653 1.43179 1.04667 1.09216 1.56828 1.23104 0.98473 0.82176 1.06946 0.87214 0.86908 0.87877 0.82286 0.75895 0.93519 0.91273 0.92934 0.97495 0.94182 0.90718 0.94939 0.75387 0.78824 0.87160 0.85734 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 8.95 71.23 0.64 0.33 16 2 C 0.19 2.62 6.64 41.20 0.27 2.89 16 3 C -0.30 -7.55 9.57 22.34 0.21 -7.34 16 4 C 0.38 14.82 6.96 25.44 0.18 15.00 16 5 O -0.57 -28.75 16.41 13.54 0.22 -28.53 16 6 C -0.35 -12.05 6.05 -18.63 -0.11 -12.16 16 7 C 0.57 23.94 7.74 86.62 0.67 24.61 16 8 O -0.58 -30.90 15.23 15.04 0.23 -30.67 16 9 N -0.70 -25.14 4.11 -445.81 -1.83 -26.97 16 10 C 0.17 6.48 2.47 45.02 0.11 6.59 16 11 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 12 C -0.14 -6.09 5.77 30.66 0.18 -5.92 16 13 C 0.19 9.00 5.05 86.35 0.44 9.44 16 14 N -0.60 -27.36 2.99 -699.15 -2.09 -29.45 16 15 C -0.26 -13.38 9.58 84.03 0.81 -12.58 16 16 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 17 C -0.04 -2.27 4.92 84.86 0.42 -1.85 16 18 N -0.93 -52.27 11.20 21.65 0.24 -52.03 16 19 Si 0.96 42.73 29.59 68.60 2.03 44.76 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.12 4.23 5.84 86.36 0.50 4.73 16 24 C 0.10 3.12 3.36 30.67 0.10 3.22 16 25 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 26 O -0.57 -15.34 13.21 -148.98 -1.97 -17.31 16 27 C 0.22 4.49 9.79 84.25 0.83 5.31 16 28 N -0.46 -5.70 2.97 -532.78 -1.58 -7.28 16 29 C 0.03 0.04 9.62 127.77 1.23 1.27 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.11 -0.38 6.50 -2.39 -0.02 -0.39 16 32 H 0.10 0.19 8.06 -2.38 -0.02 0.17 16 33 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 34 H 0.40 12.19 4.95 -92.70 -0.46 11.73 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 38 H 0.01 0.35 7.74 -2.39 -0.02 0.33 16 39 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 40 H 0.07 2.39 7.93 -2.38 -0.02 2.37 16 41 H 0.03 1.06 6.64 -2.39 -0.02 1.05 16 42 H 0.40 6.67 9.08 -74.06 -0.67 6.00 16 43 H 0.20 2.88 6.35 -2.91 -0.02 2.86 16 44 H 0.11 -0.31 8.14 -2.39 -0.02 -0.32 16 45 H 0.12 -0.47 6.39 -2.39 -0.02 -0.49 16 46 H 0.11 0.06 7.96 -2.39 -0.02 0.05 16 Total: -1.00 -94.85 369.55 1.62 -93.23 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.10 Total: 20.68 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 6.47 Total: 33.56 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -5.26 Total: -115.73 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -1.52 Total: -76.50 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -94.85 1.62 -93.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.414 kcal (2) G-P(sol) polarization free energy of solvation -94.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds