Wall clock time and date at job start Tue Mar 31 2020 19:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34861 * 119.10591 * 2 1 4 4 C 1.41668 * 119.34143 * 180.02562 * 3 2 1 5 5 O 1.22091 * 121.06789 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86396 * 359.97438 * 4 3 2 7 7 C 1.47290 * 120.88097 * 180.02562 * 6 4 3 8 8 O 1.21622 * 120.00105 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99847 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99935 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46011 * 34.96498 * 10 9 7 12 12 C 1.53046 * 109.45799 * 275.00063 * 10 9 7 13 13 C 1.53193 * 109.31222 * 178.62772 * 12 10 9 14 14 N 1.46925 * 108.77400 * 54.63475 * 13 12 10 15 15 C 1.36944 * 120.63206 * 126.11670 * 14 13 12 16 16 H 1.07993 * 119.99754 * 334.93774 * 15 14 13 17 17 C 1.38807 * 119.99835 * 154.93603 * 15 14 13 18 18 N 1.31621 * 119.99704 * 156.75516 * 17 15 14 19 19 Si 1.86799 * 120.00509 * 336.75138 * 17 15 14 20 20 H 1.48506 * 109.47283 * 94.64617 * 19 17 15 21 21 H 1.48496 * 109.47576 * 214.65045 * 19 17 15 22 22 H 1.48506 * 109.46736 * 334.64832 * 19 17 15 23 23 C 1.46928 * 118.74015 * 306.38974 * 14 13 12 24 24 C 1.53036 * 109.45178 * 154.94109 * 10 9 7 25 25 H 1.09000 * 109.50028 * 61.38771 * 24 10 9 26 26 O 1.42904 * 109.49215 * 301.32968 * 24 10 9 27 27 C 1.37986 * 118.23330 * 0.27822 * 6 4 3 28 28 N 1.34345 * 120.37471 * 359.46453 * 27 6 4 29 29 C 1.46500 * 118.80703 * 180.26785 * 28 27 6 30 30 H 1.09002 * 109.46889 * 90.29786 * 1 2 3 31 31 H 1.08997 * 109.47260 * 210.29883 * 1 2 3 32 32 H 1.09001 * 109.46390 * 330.30245 * 1 2 3 33 33 H 1.07999 * 120.32757 * 359.97112 * 3 2 1 34 34 H 0.96998 * 120.00098 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.49964 * 58.67244 * 12 10 9 36 36 H 1.09007 * 109.52430 * 298.59450 * 12 10 9 37 37 H 1.09001 * 109.58553 * 294.84709 * 13 12 10 38 38 H 1.09000 * 109.58601 * 174.41946 * 13 12 10 39 39 H 0.97000 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.58992 * 173.39646 * 23 14 13 41 41 H 1.08996 * 109.58480 * 293.82684 * 23 14 13 42 42 H 0.96703 * 113.99888 * 180.02562 * 26 24 10 43 43 H 1.08003 * 119.81219 * 179.70435 * 27 6 4 44 44 H 1.09000 * 109.47000 * 264.50804 * 29 28 27 45 45 H 1.09000 * 109.47101 * 24.50832 * 29 28 27 46 46 H 1.09000 * 109.47051 * 144.50884 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1841 -0.0006 5 8 4.2054 2.2325 -0.0010 6 6 4.2725 -0.1135 -0.0005 7 6 5.7437 -0.1849 -0.0005 8 8 6.4022 0.8376 -0.0001 9 7 6.3601 -1.3835 -0.0010 10 6 7.8234 -1.4546 -0.0004 11 1 8.2267 -0.6314 0.5892 12 6 8.3393 -1.3528 -1.4377 13 6 9.8707 -1.3930 -1.4303 14 7 10.3086 -2.6000 -0.7160 15 6 11.1706 -3.4857 -1.3058 16 1 11.2252 -3.5505 -2.3824 17 6 11.9742 -4.3000 -0.5198 18 7 12.4450 -5.4282 -1.0077 19 14 12.3877 -3.7949 1.2304 20 1 11.4261 -4.4277 2.1686 21 1 13.7660 -4.2377 1.5610 22 1 12.2997 -2.3175 1.3531 23 6 9.7992 -2.8419 0.6407 24 6 8.2687 -2.7854 0.6101 25 1 7.8857 -3.6086 0.0070 26 8 7.7607 -2.8929 1.9414 27 6 3.5076 -1.2619 -0.0059 28 7 2.1663 -1.1848 -0.0001 29 6 1.3879 -2.4258 -0.0001 30 1 -0.3633 -0.0053 -1.0277 31 1 -0.3633 -0.8873 0.5184 32 1 -0.3632 0.8927 0.5092 33 1 1.6138 2.1082 -0.0005 34 1 5.8349 -2.1990 -0.0017 35 1 8.0021 -0.4153 -1.8798 36 1 7.9562 -2.1893 -2.0224 37 1 10.2570 -0.5084 -0.9240 38 1 10.2404 -1.4207 -2.4553 39 1 13.0062 -5.9974 -0.4583 40 1 10.1218 -3.8254 0.9823 41 1 10.1797 -2.0754 1.3159 42 1 8.0050 -3.7138 2.3906 43 1 3.9898 -2.2282 -0.0108 44 1 1.1073 -2.6787 -1.0225 45 1 1.9887 -3.2316 0.4217 46 1 0.4885 -2.2905 0.6007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090341026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:15 Heat of formation + Delta-G solvation = -45.606554 kcal Electronic energy + Delta-G solvation = -29521.549510 eV Core-core repulsion = 25413.118127 eV Total energy + Delta-G solvation = -4108.431383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48958 -39.61947 -38.28935 -37.54763 -35.50756 -34.38791 -33.79063 -32.96554 -32.02097 -30.19963 -29.25623 -28.30603 -27.26892 -25.17743 -24.36230 -23.04658 -22.22052 -21.45762 -20.54030 -19.76812 -18.30359 -17.84226 -17.00218 -16.84787 -16.46134 -16.40531 -16.04287 -15.86782 -14.89231 -14.66896 -14.58709 -14.32496 -14.00391 -13.94573 -13.86690 -13.59140 -13.50155 -13.28726 -13.25301 -12.83609 -12.78162 -12.42699 -12.33339 -12.29354 -12.19230 -12.08964 -11.39179 -10.96846 -10.84560 -10.50887 -10.32004 -9.94904 -9.79708 -9.77717 -9.64784 -9.52028 -9.17867 -8.73271 -8.66339 -8.15460 -7.09556 -6.02319 -3.35702 0.64111 1.05275 2.00135 3.06696 3.24779 3.29677 3.46016 3.51238 3.70381 3.83105 4.02908 4.17018 4.31696 4.36359 4.46124 4.47370 4.67874 4.78032 4.81936 4.86472 4.91926 5.10426 5.20918 5.25390 5.29238 5.42806 5.47798 5.51045 5.63792 5.79675 5.85524 6.05663 6.10013 6.25938 6.30472 6.36299 6.43505 6.47119 6.52467 6.61515 6.80207 6.86633 7.75910 7.78651 7.94228 8.07518 8.25352 8.57146 8.85767 9.64483 10.00572 11.13137 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.002764 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.158415 B =10127.299596 C =10603.429498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 C -0.269 4.269 4 C 0.406 3.594 5 O -0.478 6.478 6 C -0.291 4.291 7 C 0.570 3.430 8 O -0.512 6.512 9 N -0.721 5.721 10 C 0.164 3.836 11 H 0.090 0.910 12 C -0.141 4.141 13 C 0.148 3.852 14 N -0.602 5.602 15 C -0.261 4.261 16 H 0.089 0.911 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.103 3.897 24 C 0.081 3.919 25 H 0.062 0.938 26 O -0.571 6.571 27 C 0.171 3.829 28 N -0.472 5.472 29 C 0.048 3.952 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.389 0.611 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.376 0.624 43 H 0.167 0.833 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.165 1.864 2.750 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 C -0.293 4.293 4 C 0.292 3.708 5 O -0.359 6.359 6 C -0.302 4.302 7 C 0.357 3.643 8 O -0.387 6.387 9 N -0.372 5.372 10 C 0.060 3.940 11 H 0.108 0.892 12 C -0.181 4.181 13 C 0.022 3.978 14 N -0.327 5.327 15 C -0.389 4.389 16 H 0.107 0.893 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.707 3.293 20 H -0.218 1.218 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.024 4.024 24 C 0.019 3.981 25 H 0.080 0.920 26 O -0.375 6.375 27 C 0.041 3.959 28 N -0.160 5.160 29 C -0.094 4.094 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.169 0.831 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.222 0.778 43 H 0.184 0.816 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.585 3.485 2.608 28.914 hybrid contribution 0.276 -1.128 1.162 1.643 sum -28.309 2.357 3.770 28.656 Atomic orbital electron populations 1.21205 0.88099 1.04881 1.04304 1.20257 0.94821 0.85008 0.95129 1.22275 0.96349 0.97186 1.13537 1.18163 0.88215 0.87949 0.76476 1.90832 1.69923 1.33205 1.41919 1.22623 0.94582 0.95062 1.17977 1.17463 0.85978 0.83775 0.77093 1.90853 1.65746 1.33903 1.48159 1.45950 1.07650 1.07362 1.76287 1.20915 0.78517 0.97597 0.96929 0.89203 1.22427 0.98789 1.01941 0.94994 1.20974 0.90778 0.88795 0.97301 1.44353 1.52078 1.22847 1.13413 1.18944 1.14373 1.12611 0.92946 0.89304 1.25240 0.98038 0.96607 0.97722 1.69867 1.36893 1.10290 1.37603 0.87043 0.76865 0.79579 0.85804 1.21842 1.22937 1.19365 1.21995 0.91016 1.00818 0.88582 1.22795 0.96100 0.96450 0.82713 0.92036 1.86460 1.77645 1.44945 1.28450 1.22222 0.82084 0.99986 0.91653 1.42539 1.05285 1.07178 1.60972 1.22556 0.97882 0.84410 1.04503 0.89241 0.90157 0.88897 0.83084 0.77787 0.91181 0.91634 0.95213 0.91145 0.92712 0.90404 0.94549 0.77761 0.81626 0.89919 0.88733 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.27 9.45 36.01 0.34 0.07 16 2 C 0.15 0.98 6.64 -82.13 -0.54 0.44 16 3 C -0.27 -2.78 9.57 -39.47 -0.38 -3.16 16 4 C 0.41 6.38 6.96 -34.68 -0.24 6.13 16 5 O -0.48 -9.98 16.41 -15.18 -0.25 -10.23 16 6 C -0.29 -4.03 6.05 -102.72 -0.62 -4.65 16 7 C 0.57 9.89 7.74 -12.58 -0.10 9.79 16 8 O -0.51 -11.51 15.24 -14.76 -0.22 -11.73 16 9 N -0.72 -10.69 4.87 -54.88 -0.27 -10.96 16 10 C 0.16 2.90 2.12 -67.89 -0.14 2.76 16 11 H 0.09 1.85 7.57 -51.93 -0.39 1.45 16 12 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 13 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 14 N -0.60 -14.12 2.79 -172.32 -0.48 -14.60 16 15 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 16 H 0.09 2.57 8.04 -52.49 -0.42 2.15 16 17 C 0.02 0.65 5.20 -17.43 -0.09 0.56 16 18 N -0.90 -27.02 13.97 55.49 0.78 -26.24 16 19 Si 0.88 21.98 24.39 -169.99 -4.15 17.84 16 20 H -0.29 -6.87 6.65 56.52 0.38 -6.49 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.80 6.67 56.52 0.38 -6.42 16 23 C 0.10 2.20 3.85 -3.71 -0.01 2.19 16 24 C 0.08 1.40 3.14 -26.62 -0.08 1.32 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 O -0.57 -8.90 13.16 -35.23 -0.46 -9.36 16 27 C 0.17 1.38 9.79 -16.54 -0.16 1.22 16 28 N -0.47 -2.61 2.97 -119.75 -0.36 -2.97 16 29 C 0.05 0.04 9.98 59.85 0.60 0.64 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.01 5.76 -51.93 -0.30 -0.29 16 32 H 0.09 0.16 8.05 -51.93 -0.42 -0.26 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.39 4.34 6.68 -40.82 -0.27 4.06 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.76 4.42 -51.93 -0.23 1.53 16 41 H 0.04 0.82 7.18 -51.93 -0.37 0.44 16 42 H 0.38 4.52 9.08 45.56 0.41 4.94 16 43 H 0.17 0.81 6.29 -52.48 -0.33 0.48 16 44 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.09 -0.02 7.87 -51.93 -0.41 -0.43 16 46 H 0.09 -0.07 5.86 -51.93 -0.30 -0.38 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -41.07 366.86 -7.24 -48.31 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.59 Total: 4.06 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.77 Total: 10.37 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.33 Total: -54.77 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.94 Total: -31.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.07 -7.24 -48.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.703 kcal (2) G-P(sol) polarization free energy of solvation -41.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds