Wall clock time and date at job start Tue Mar 31 2020 19:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34861 * 119.10591 * 2 1 4 4 C 1.41668 * 119.34143 * 180.02562 * 3 2 1 5 5 O 1.22091 * 121.06789 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86396 * 359.97438 * 4 3 2 7 7 C 1.47290 * 120.88097 * 180.02562 * 6 4 3 8 8 O 1.21622 * 120.00105 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99847 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99935 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46011 * 34.96498 * 10 9 7 12 12 C 1.53046 * 109.45799 * 275.00063 * 10 9 7 13 13 C 1.53193 * 109.31222 * 178.62772 * 12 10 9 14 14 N 1.46925 * 108.77400 * 54.63475 * 13 12 10 15 15 C 1.36944 * 120.63206 * 126.11670 * 14 13 12 16 16 H 1.07993 * 119.99754 * 334.93774 * 15 14 13 17 17 C 1.38807 * 119.99835 * 154.93603 * 15 14 13 18 18 N 1.31621 * 119.99704 * 156.75516 * 17 15 14 19 19 Si 1.86799 * 120.00509 * 336.75138 * 17 15 14 20 20 H 1.48506 * 109.47283 * 94.64617 * 19 17 15 21 21 H 1.48496 * 109.47576 * 214.65045 * 19 17 15 22 22 H 1.48506 * 109.46736 * 334.64832 * 19 17 15 23 23 C 1.46928 * 118.74015 * 306.38974 * 14 13 12 24 24 C 1.53036 * 109.45178 * 154.94109 * 10 9 7 25 25 H 1.09000 * 109.50028 * 61.38771 * 24 10 9 26 26 O 1.42904 * 109.49215 * 301.32968 * 24 10 9 27 27 C 1.37986 * 118.23330 * 0.27822 * 6 4 3 28 28 N 1.34345 * 120.37471 * 359.46453 * 27 6 4 29 29 C 1.46500 * 118.80703 * 180.26785 * 28 27 6 30 30 H 1.09002 * 109.46889 * 90.29786 * 1 2 3 31 31 H 1.08997 * 109.47260 * 210.29883 * 1 2 3 32 32 H 1.09001 * 109.46390 * 330.30245 * 1 2 3 33 33 H 1.07999 * 120.32757 * 359.97112 * 3 2 1 34 34 H 0.96998 * 120.00098 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.49964 * 58.67244 * 12 10 9 36 36 H 1.09007 * 109.52430 * 298.59450 * 12 10 9 37 37 H 1.09001 * 109.58553 * 294.84709 * 13 12 10 38 38 H 1.09000 * 109.58601 * 174.41946 * 13 12 10 39 39 H 0.97000 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.58992 * 173.39646 * 23 14 13 41 41 H 1.08996 * 109.58480 * 293.82684 * 23 14 13 42 42 H 0.96703 * 113.99888 * 180.02562 * 26 24 10 43 43 H 1.08003 * 119.81219 * 179.70435 * 27 6 4 44 44 H 1.09000 * 109.47000 * 264.50804 * 29 28 27 45 45 H 1.09000 * 109.47101 * 24.50832 * 29 28 27 46 46 H 1.09000 * 109.47051 * 144.50884 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1841 -0.0006 5 8 4.2054 2.2325 -0.0010 6 6 4.2725 -0.1135 -0.0005 7 6 5.7437 -0.1849 -0.0005 8 8 6.4022 0.8376 -0.0001 9 7 6.3601 -1.3835 -0.0010 10 6 7.8234 -1.4546 -0.0004 11 1 8.2267 -0.6314 0.5892 12 6 8.3393 -1.3528 -1.4377 13 6 9.8707 -1.3930 -1.4303 14 7 10.3086 -2.6000 -0.7160 15 6 11.1706 -3.4857 -1.3058 16 1 11.2252 -3.5505 -2.3824 17 6 11.9742 -4.3000 -0.5198 18 7 12.4450 -5.4282 -1.0077 19 14 12.3877 -3.7949 1.2304 20 1 11.4261 -4.4277 2.1686 21 1 13.7660 -4.2377 1.5610 22 1 12.2997 -2.3175 1.3531 23 6 9.7992 -2.8419 0.6407 24 6 8.2687 -2.7854 0.6101 25 1 7.8857 -3.6086 0.0070 26 8 7.7607 -2.8929 1.9414 27 6 3.5076 -1.2619 -0.0059 28 7 2.1663 -1.1848 -0.0001 29 6 1.3879 -2.4258 -0.0001 30 1 -0.3633 -0.0053 -1.0277 31 1 -0.3633 -0.8873 0.5184 32 1 -0.3632 0.8927 0.5092 33 1 1.6138 2.1082 -0.0005 34 1 5.8349 -2.1990 -0.0017 35 1 8.0021 -0.4153 -1.8798 36 1 7.9562 -2.1893 -2.0224 37 1 10.2570 -0.5084 -0.9240 38 1 10.2404 -1.4207 -2.4553 39 1 13.0062 -5.9974 -0.4583 40 1 10.1218 -3.8254 0.9823 41 1 10.1797 -2.0754 1.3159 42 1 8.0050 -3.7138 2.3906 43 1 3.9898 -2.2282 -0.0108 44 1 1.1073 -2.6787 -1.0225 45 1 1.9887 -3.2316 0.4217 46 1 0.4885 -2.2905 0.6007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090341026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:14 Heat of formation + Delta-G solvation = -79.990574 kcal Electronic energy + Delta-G solvation = -29523.040513 eV Core-core repulsion = 25413.118127 eV Total energy + Delta-G solvation = -4109.922386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24067 -40.93513 -39.57586 -38.77678 -37.04076 -35.83726 -34.60881 -34.02850 -33.53493 -31.78561 -30.73552 -29.06704 -27.67558 -26.84668 -25.25647 -24.63435 -23.57697 -22.63338 -21.67145 -21.31197 -19.42220 -18.80070 -18.54662 -18.28946 -17.48588 -17.25835 -16.97490 -16.86186 -16.51094 -16.13594 -15.84448 -15.61361 -15.29071 -15.11049 -14.82706 -14.73493 -14.60182 -14.23872 -14.16896 -13.99588 -13.84899 -13.83845 -13.66860 -13.33592 -13.09681 -12.71589 -12.64436 -12.50760 -12.46743 -12.37420 -12.02387 -11.74224 -11.42392 -11.18866 -11.10540 -10.70000 -10.49641 -10.31355 -10.07963 -9.06932 -9.04834 -8.19457 -5.49783 -0.20384 0.32929 1.24289 1.41942 1.47034 1.50321 1.90842 2.08376 2.37313 2.79360 2.87334 3.11986 3.22807 3.32430 3.59965 3.63313 3.76727 3.80071 3.99380 4.06849 4.19046 4.22385 4.26399 4.34152 4.42832 4.49345 4.55189 4.67204 4.72578 4.73601 4.78991 4.82574 4.87951 4.89413 4.91337 4.98978 5.16794 5.26207 5.33355 5.45600 5.71311 5.79920 5.80051 6.09716 6.62847 6.73765 6.87015 7.10115 7.36324 7.55568 7.95468 8.99606 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.002764 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.158415 B =10127.299596 C =10603.429498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.187 3.813 3 C -0.305 4.305 4 C 0.381 3.619 5 O -0.569 6.569 6 C -0.351 4.351 7 C 0.568 3.432 8 O -0.580 6.580 9 N -0.701 5.701 10 C 0.169 3.831 11 H 0.055 0.945 12 C -0.126 4.126 13 C 0.144 3.856 14 N -0.612 5.612 15 C -0.250 4.250 16 H 0.063 0.937 17 C -0.025 4.025 18 N -0.946 5.946 19 Si 0.933 3.067 20 H -0.263 1.263 21 H -0.310 1.310 22 H -0.277 1.277 23 C 0.097 3.903 24 C 0.102 3.898 25 H 0.082 0.918 26 O -0.569 6.569 27 C 0.223 3.777 28 N -0.455 5.455 29 C 0.031 3.969 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.264 0.736 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.395 0.605 43 H 0.210 0.790 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.005 -1.424 3.760 34.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 C -0.328 4.328 4 C 0.274 3.726 5 O -0.458 6.458 6 C -0.362 4.362 7 C 0.357 3.643 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.063 3.937 11 H 0.073 0.927 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.338 5.338 15 C -0.379 4.379 16 H 0.080 0.920 17 C -0.221 4.221 18 N -0.592 5.592 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.239 1.239 22 H -0.202 1.202 23 C -0.029 4.029 24 C 0.041 3.959 25 H 0.099 0.901 26 O -0.376 6.376 27 C 0.088 3.912 28 N -0.138 5.138 29 C -0.107 4.107 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.245 0.755 43 H 0.227 0.773 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -33.551 0.106 3.648 33.749 hybrid contribution 1.542 -0.265 0.805 1.760 sum -32.009 -0.159 4.453 32.318 Atomic orbital electron populations 1.21427 0.83868 1.06893 1.06124 1.20846 0.97072 0.83909 0.90204 1.22127 0.93949 0.99534 1.17180 1.18987 0.90428 0.87838 0.75346 1.90773 1.71765 1.35650 1.47607 1.22165 0.92967 0.96464 1.24555 1.18026 0.87490 0.83179 0.75579 1.90811 1.67456 1.36225 1.51471 1.45600 1.06410 1.07781 1.75618 1.20635 0.80231 0.96688 0.96119 0.92664 1.22220 0.96557 1.02296 0.95539 1.21062 0.92689 0.87457 0.96906 1.44429 1.51921 1.23192 1.14238 1.18888 1.14608 1.12359 0.92055 0.91968 1.25733 0.98473 0.96642 1.01254 1.69960 1.38464 1.11519 1.39250 0.86127 0.76558 0.78621 0.82472 1.18938 1.23885 1.20227 1.22041 0.93996 0.99808 0.87033 1.22365 0.92966 0.96554 0.84062 0.90064 1.86450 1.77049 1.46586 1.27520 1.22631 0.82972 0.99508 0.86118 1.43209 1.04930 1.09056 1.56646 1.23151 0.98602 0.82082 1.06909 0.87161 0.86767 0.88347 0.82818 0.75214 0.91602 0.90134 0.95850 0.91137 0.92728 0.91193 0.95644 0.75530 0.77312 0.87598 0.86444 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.19 9.45 71.24 0.67 0.87 16 2 C 0.19 1.68 6.64 41.20 0.27 1.95 16 3 C -0.30 -6.30 9.57 22.34 0.21 -6.09 16 4 C 0.38 12.89 6.96 25.44 0.18 13.06 16 5 O -0.57 -26.83 16.41 13.53 0.22 -26.61 16 6 C -0.35 -9.71 6.05 -18.63 -0.11 -9.82 16 7 C 0.57 20.33 7.74 86.62 0.67 21.00 16 8 O -0.58 -28.32 15.24 15.04 0.23 -28.09 16 9 N -0.70 -19.90 4.87 -445.80 -2.17 -22.07 16 10 C 0.17 5.87 2.12 45.02 0.10 5.97 16 11 H 0.06 2.35 7.57 -2.39 -0.02 2.33 16 12 C -0.13 -4.46 5.65 30.67 0.17 -4.29 16 13 C 0.14 5.97 6.52 86.36 0.56 6.53 16 14 N -0.61 -28.71 2.79 -699.11 -1.95 -30.66 16 15 C -0.25 -13.79 10.03 84.03 0.84 -12.95 16 16 H 0.06 3.71 8.04 -2.91 -0.02 3.69 16 17 C -0.03 -1.44 5.20 84.86 0.44 -1.00 16 18 N -0.95 -57.25 13.97 21.65 0.30 -56.95 16 19 Si 0.93 45.55 24.39 68.60 1.67 47.23 16 20 H -0.26 -11.57 6.65 99.48 0.66 -10.91 16 21 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 22 H -0.28 -13.75 6.67 99.48 0.66 -13.09 16 23 C 0.10 4.06 3.85 86.36 0.33 4.40 16 24 C 0.10 3.32 3.14 30.67 0.10 3.41 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 O -0.57 -15.95 13.16 -148.98 -1.96 -17.91 16 27 C 0.22 2.70 9.79 84.25 0.83 3.53 16 28 N -0.46 -2.55 2.97 -532.77 -1.58 -4.14 16 29 C 0.03 -0.18 9.98 127.77 1.27 1.09 16 30 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.11 -0.86 5.76 -2.39 -0.01 -0.87 16 32 H 0.10 -0.11 8.05 -2.39 -0.02 -0.13 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.41 7.61 6.68 -92.71 -0.62 6.99 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 2.87 7.92 -2.39 -0.02 2.85 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 40 H 0.07 3.03 4.42 -2.39 -0.01 3.02 16 41 H 0.03 1.13 7.18 -2.39 -0.02 1.11 16 42 H 0.39 7.92 9.08 -74.06 -0.67 7.25 16 43 H 0.21 0.68 6.29 -2.91 -0.02 0.66 16 44 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H 0.12 -1.06 7.87 -2.39 -0.02 -1.07 16 46 H 0.12 -1.23 5.86 -2.39 -0.01 -1.25 16 Total: -1.00 -102.50 366.86 0.96 -101.54 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -0.34 Total: 10.00 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 6.54 Total: 27.66 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.40 Total: -113.81 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: -1.51 Total: -72.61 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.23 kcal Total: -102.50 0.96 -101.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090341026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.547 kcal (2) G-P(sol) polarization free energy of solvation -102.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds