Wall clock time and date at job start Tue Mar 31 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33491 * 126.83063 * 2 1 4 4 N 1.20658 * 113.15784 * 180.30032 * 3 2 1 5 5 C 1.30018 * 112.30119 * 359.75249 * 4 3 2 6 6 C 1.50700 * 127.33513 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49777 * 8.75210 * 6 5 4 8 8 C 1.52996 * 117.50037 * 300.09189 * 6 5 4 9 9 C 1.37367 * 126.82987 * 179.89137 * 2 1 3 10 10 C 1.47401 * 128.56276 * 359.97438 * 9 2 1 11 11 O 1.21602 * 119.99963 * 269.67864 * 10 9 2 12 12 N 1.34777 * 119.99648 * 89.67415 * 10 9 2 13 13 C 1.46496 * 119.99830 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46141 * 324.97995 * 13 12 10 15 15 C 1.53045 * 109.44597 * 84.94760 * 13 12 10 16 16 C 1.53192 * 109.31492 * 58.64694 * 15 13 12 17 17 N 1.47201 * 108.85247 * 54.65007 * 16 15 13 18 18 C 1.36941 * 120.81053 * 126.34026 * 17 16 15 19 19 H 1.08001 * 119.99573 * 207.53455 * 18 17 16 20 20 C 1.38804 * 120.00378 * 27.53087 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.26718 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.26803 * 20 18 17 23 23 H 1.48490 * 109.47145 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46826 * 120.00101 * 22 20 18 25 25 H 1.48498 * 109.47107 * 239.99663 * 22 20 18 26 26 C 1.46928 * 118.56064 * 306.47866 * 17 16 15 27 27 C 1.53044 * 109.45994 * 205.00405 * 13 12 10 28 28 H 1.09007 * 109.49718 * 181.41248 * 27 13 12 29 29 O 1.42900 * 109.49903 * 61.31387 * 27 13 12 30 30 H 1.08995 * 109.47182 * 270.10505 * 1 2 3 31 31 H 1.09000 * 109.46934 * 30.11271 * 1 2 3 32 32 H 1.09003 * 109.47125 * 150.11019 * 1 2 3 33 33 H 1.08997 * 115.54745 * 154.42058 * 6 5 4 34 34 H 1.09000 * 117.49726 * 359.97438 * 7 6 5 35 35 H 1.08995 * 117.49722 * 145.01536 * 7 6 5 36 36 H 1.09006 * 117.50041 * 214.97762 * 8 6 5 37 37 H 1.09002 * 117.50235 * 359.97194 * 8 6 5 38 38 H 0.97008 * 120.00203 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.49621 * 178.59655 * 15 13 12 40 40 H 1.08995 * 109.49793 * 298.69291 * 15 13 12 41 41 H 1.08993 * 109.58703 * 174.42473 * 16 15 13 42 42 H 1.08999 * 109.58106 * 294.84947 * 16 15 13 43 43 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.58611 * 293.68316 * 26 17 16 45 45 H 1.09000 * 109.59015 * 173.39820 * 26 17 16 46 46 H 0.96692 * 113.99978 * 180.15615 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0058 5 6 3.6747 -0.5022 -0.0055 6 6 4.9964 -1.2260 -0.0121 7 6 6.2615 -0.3886 0.1863 8 6 5.9362 -0.9699 -1.1919 9 6 2.3304 -1.0995 0.0021 10 6 1.9587 -2.5259 0.0053 11 8 1.8115 -3.1134 1.0597 12 7 1.7819 -3.1788 -1.1604 13 6 1.4130 -4.5965 -1.1573 14 1 1.8974 -5.0959 -0.3183 15 6 -0.1057 -4.7275 -1.0209 16 6 -0.7839 -3.9950 -2.1829 17 7 -0.2451 -4.5132 -3.4510 18 6 -1.0812 -4.9839 -4.4281 19 1 -0.7328 -5.7357 -5.1208 20 6 -2.3764 -4.4949 -4.5282 21 7 -2.7017 -3.3666 -3.9334 22 14 -3.6579 -5.4380 -5.5068 23 1 -3.0434 -6.6652 -6.0737 24 1 -4.7838 -5.8142 -4.6146 25 1 -4.1651 -4.5838 -6.6106 26 6 1.2112 -4.5178 -3.6459 27 6 1.8670 -5.2444 -2.4674 28 1 1.5706 -6.2933 -2.4764 29 8 3.2883 -5.1487 -2.5794 30 1 -0.3633 0.0019 1.0276 31 1 -0.3633 0.8890 -0.5156 32 1 -0.3633 -0.8910 -0.5121 33 1 4.9851 -2.2293 0.4136 34 1 6.1377 0.6859 0.3212 35 1 7.0825 -0.8411 0.7423 36 1 6.5435 -1.8046 -1.5421 37 1 5.5984 -0.2781 -1.9636 38 1 1.8997 -2.7101 -2.0016 39 1 -0.3834 -5.7813 -1.0435 40 1 -0.4255 -4.2867 -0.0768 41 1 -1.8593 -4.1680 -2.1460 42 1 -0.5808 -2.9266 -2.1096 43 1 -3.6066 -3.0247 -4.0036 44 1 1.5769 -3.4920 -3.6919 45 1 1.4541 -5.0343 -4.5745 46 1 3.6461 -5.5379 -3.3891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090437291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:19 Heat of formation + Delta-G solvation = 23.179439 kcal Electronic energy + Delta-G solvation = -30382.846759 eV Core-core repulsion = 26277.398161 eV Total energy + Delta-G solvation = -4105.448598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.84392 -39.83028 -37.96063 -37.55500 -35.48495 -34.09311 -33.71595 -32.84958 -31.72355 -30.24229 -28.70630 -27.91680 -25.63567 -24.85526 -23.81760 -22.57526 -22.36479 -21.93389 -20.83709 -19.34908 -18.80385 -18.00195 -17.71148 -17.14363 -16.72962 -16.47435 -15.64300 -15.36892 -15.00103 -14.88471 -14.48725 -14.31257 -13.95001 -13.78033 -13.45794 -13.25776 -13.19041 -12.81179 -12.67950 -12.35693 -12.10638 -12.05184 -11.78415 -11.74009 -11.61336 -11.30469 -11.24925 -10.95391 -10.76612 -10.56094 -10.42266 -10.27341 -10.04106 -9.98634 -9.79151 -9.57628 -9.50512 -9.31737 -8.71998 -8.58530 -6.84796 -5.93429 -3.36856 1.34095 1.83815 2.62463 2.87618 3.28874 3.37667 3.38866 3.48090 3.66658 3.92929 4.23988 4.30858 4.45965 4.68468 4.80322 4.82270 4.97047 5.05520 5.21708 5.24951 5.35645 5.39404 5.41192 5.44848 5.51364 5.57110 5.60047 5.64258 5.81081 5.88255 5.91647 5.93491 5.95179 5.99030 6.17886 6.38028 6.45428 6.57815 6.60781 6.83021 7.18763 7.49757 7.65905 7.75361 7.86184 8.22013 8.28640 8.40208 9.04646 9.66958 10.22311 11.15022 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.003646 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.157218 B = 7676.855402 C = 8538.702020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 O 0.094 5.906 4 N -0.359 5.359 5 C 0.088 3.912 6 C -0.088 4.088 7 C -0.163 4.163 8 C -0.155 4.155 9 C -0.243 4.243 10 C 0.601 3.399 11 O -0.537 6.537 12 N -0.690 5.690 13 C 0.165 3.835 14 H 0.080 0.920 15 C -0.154 4.154 16 C 0.171 3.829 17 N -0.587 5.587 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.118 3.882 27 C 0.076 3.924 28 H 0.068 0.932 29 O -0.570 6.570 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.667 4.030 5.763 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 O 0.033 5.967 4 N -0.065 5.065 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.201 4.201 8 C -0.193 4.193 9 C -0.251 4.251 10 C 0.384 3.616 11 O -0.414 6.414 12 N -0.340 5.340 13 C 0.061 3.939 14 H 0.099 0.901 15 C -0.195 4.195 16 C 0.046 3.954 17 N -0.311 5.311 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.217 1.217 26 C -0.010 4.010 27 C 0.015 3.985 28 H 0.086 0.914 29 O -0.374 6.374 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.240 0.760 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.093 5.044 7.063 14.885 hybrid contribution -0.968 -1.224 -1.450 2.130 sum 11.125 3.819 5.613 13.033 Atomic orbital electron populations 1.20532 0.82771 1.05828 1.04702 1.24683 0.96083 0.84935 0.98340 1.84515 1.11046 1.32995 1.68180 1.73514 0.96034 1.16343 1.20603 1.23682 0.94240 0.88609 1.00855 1.20235 0.84846 0.99630 1.05991 1.23034 0.97108 1.00165 0.99773 1.23047 1.01273 1.03522 0.91498 1.21880 0.92500 0.95469 1.15209 1.16779 0.76773 0.83780 0.84237 1.90786 1.51652 1.67709 1.31257 1.45910 1.68403 1.11623 1.08090 1.20904 0.95988 0.80042 0.96985 0.90149 1.22608 0.93270 1.02439 1.01142 1.20851 0.99196 0.93765 0.81605 1.44067 0.98861 1.73644 1.14505 1.19194 0.93575 1.16027 1.09970 0.91513 1.25024 0.99214 0.95679 0.99333 1.70025 1.19032 1.18221 1.46992 0.86221 0.81697 0.79452 0.79353 1.20236 1.21432 1.21667 1.21536 0.86893 0.97235 0.95299 1.22733 0.79934 0.99375 0.96430 0.91444 1.86480 1.21255 1.83933 1.45760 0.88727 0.89021 0.88063 0.85407 0.88040 0.87912 0.87597 0.88435 0.75972 0.91261 0.91739 0.89068 0.96122 0.93536 0.96047 0.92242 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.33 36.01 0.37 -0.53 16 2 C 0.02 0.32 7.55 -34.63 -0.26 0.05 16 3 O 0.09 1.32 11.06 18.66 0.21 1.53 16 4 N -0.36 -5.31 11.71 34.78 0.41 -4.90 16 5 C 0.09 1.29 7.08 -79.77 -0.56 0.73 16 6 C -0.09 -1.10 6.31 -91.77 -0.58 -1.68 16 7 C -0.16 -1.66 10.17 -26.69 -0.27 -1.93 16 8 C -0.16 -1.61 10.24 -26.70 -0.27 -1.88 16 9 C -0.24 -3.78 6.24 -102.89 -0.64 -4.42 16 10 C 0.60 10.29 7.57 -12.53 -0.09 10.19 16 11 O -0.54 -10.70 16.77 5.28 0.09 -10.61 16 12 N -0.69 -11.36 4.15 -54.85 -0.23 -11.59 16 13 C 0.17 2.82 2.47 -67.89 -0.17 2.65 16 14 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 15 C -0.15 -2.84 5.77 -26.61 -0.15 -2.99 16 16 C 0.17 3.72 5.07 -3.56 -0.02 3.70 16 17 N -0.59 -13.23 3.01 -172.10 -0.52 -13.75 16 18 C -0.26 -6.55 9.59 -15.06 -0.14 -6.69 16 19 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 20 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 21 N -0.90 -24.28 11.18 55.49 0.62 -23.66 16 22 Si 0.90 20.52 29.59 -169.99 -5.03 15.49 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.12 2.17 5.83 -3.71 -0.02 2.15 16 27 C 0.08 1.22 3.36 -26.61 -0.09 1.13 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 O -0.57 -8.05 13.21 -35.23 -0.47 -8.51 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 33 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.10 1.09 7.97 -51.93 -0.41 0.67 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 6.61 6.85 -40.82 -0.28 6.33 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 42 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 43 H 0.25 6.68 8.31 -40.82 -0.34 6.35 16 44 H 0.02 0.41 6.64 -51.93 -0.34 0.06 16 45 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.37 3.74 9.08 45.56 0.41 4.15 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -30.55 381.90 -8.08 -38.63 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.92 Total: 11.06 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.00 Total: 0.56 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.90 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.17 Total: -17.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.55 -8.08 -38.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090437291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.810 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds