Wall clock time and date at job start Tue Mar 31 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33491 * 126.83063 * 2 1 4 4 N 1.20658 * 113.15784 * 180.30032 * 3 2 1 5 5 C 1.30018 * 112.30119 * 359.75249 * 4 3 2 6 6 C 1.50700 * 127.33513 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49777 * 8.75210 * 6 5 4 8 8 C 1.52996 * 117.50037 * 300.09189 * 6 5 4 9 9 C 1.37367 * 126.82987 * 179.89137 * 2 1 3 10 10 C 1.47401 * 128.56276 * 359.97438 * 9 2 1 11 11 O 1.21602 * 119.99963 * 269.67864 * 10 9 2 12 12 N 1.34777 * 119.99648 * 89.67415 * 10 9 2 13 13 C 1.46496 * 119.99830 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.46141 * 324.97995 * 13 12 10 15 15 C 1.53045 * 109.44597 * 84.94760 * 13 12 10 16 16 C 1.53192 * 109.31492 * 58.64694 * 15 13 12 17 17 N 1.47201 * 108.85247 * 54.65007 * 16 15 13 18 18 C 1.36941 * 120.81053 * 126.34026 * 17 16 15 19 19 H 1.08001 * 119.99573 * 207.53455 * 18 17 16 20 20 C 1.38804 * 120.00378 * 27.53087 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.26718 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.26803 * 20 18 17 23 23 H 1.48490 * 109.47145 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46826 * 120.00101 * 22 20 18 25 25 H 1.48498 * 109.47107 * 239.99663 * 22 20 18 26 26 C 1.46928 * 118.56064 * 306.47866 * 17 16 15 27 27 C 1.53044 * 109.45994 * 205.00405 * 13 12 10 28 28 H 1.09007 * 109.49718 * 181.41248 * 27 13 12 29 29 O 1.42900 * 109.49903 * 61.31387 * 27 13 12 30 30 H 1.08995 * 109.47182 * 270.10505 * 1 2 3 31 31 H 1.09000 * 109.46934 * 30.11271 * 1 2 3 32 32 H 1.09003 * 109.47125 * 150.11019 * 1 2 3 33 33 H 1.08997 * 115.54745 * 154.42058 * 6 5 4 34 34 H 1.09000 * 117.49726 * 359.97438 * 7 6 5 35 35 H 1.08995 * 117.49722 * 145.01536 * 7 6 5 36 36 H 1.09006 * 117.50041 * 214.97762 * 8 6 5 37 37 H 1.09002 * 117.50235 * 359.97194 * 8 6 5 38 38 H 0.97008 * 120.00203 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.49621 * 178.59655 * 15 13 12 40 40 H 1.08995 * 109.49793 * 298.69291 * 15 13 12 41 41 H 1.08993 * 109.58703 * 174.42473 * 16 15 13 42 42 H 1.08999 * 109.58106 * 294.84947 * 16 15 13 43 43 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.58611 * 293.68316 * 26 17 16 45 45 H 1.09000 * 109.59015 * 173.39820 * 26 17 16 46 46 H 0.96692 * 113.99978 * 180.15615 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0058 5 6 3.6747 -0.5022 -0.0055 6 6 4.9964 -1.2260 -0.0121 7 6 6.2615 -0.3886 0.1863 8 6 5.9362 -0.9699 -1.1919 9 6 2.3304 -1.0995 0.0021 10 6 1.9587 -2.5259 0.0053 11 8 1.8115 -3.1134 1.0597 12 7 1.7819 -3.1788 -1.1604 13 6 1.4130 -4.5965 -1.1573 14 1 1.8974 -5.0959 -0.3183 15 6 -0.1057 -4.7275 -1.0209 16 6 -0.7839 -3.9950 -2.1829 17 7 -0.2451 -4.5132 -3.4510 18 6 -1.0812 -4.9839 -4.4281 19 1 -0.7328 -5.7357 -5.1208 20 6 -2.3764 -4.4949 -4.5282 21 7 -2.7017 -3.3666 -3.9334 22 14 -3.6579 -5.4380 -5.5068 23 1 -3.0434 -6.6652 -6.0737 24 1 -4.7838 -5.8142 -4.6146 25 1 -4.1651 -4.5838 -6.6106 26 6 1.2112 -4.5178 -3.6459 27 6 1.8670 -5.2444 -2.4674 28 1 1.5706 -6.2933 -2.4764 29 8 3.2883 -5.1487 -2.5794 30 1 -0.3633 0.0019 1.0276 31 1 -0.3633 0.8890 -0.5156 32 1 -0.3633 -0.8910 -0.5121 33 1 4.9851 -2.2293 0.4136 34 1 6.1377 0.6859 0.3212 35 1 7.0825 -0.8411 0.7423 36 1 6.5435 -1.8046 -1.5421 37 1 5.5984 -0.2781 -1.9636 38 1 1.8997 -2.7101 -2.0016 39 1 -0.3834 -5.7813 -1.0435 40 1 -0.4255 -4.2867 -0.0768 41 1 -1.8593 -4.1680 -2.1460 42 1 -0.5808 -2.9266 -2.1096 43 1 -3.6066 -3.0247 -4.0036 44 1 1.5769 -3.4920 -3.6919 45 1 1.4541 -5.0343 -4.5745 46 1 3.6461 -5.5379 -3.3891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090437291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:19 Heat of formation + Delta-G solvation = 2.942193 kcal Electronic energy + Delta-G solvation = -30383.724312 eV Core-core repulsion = 26277.398161 eV Total energy + Delta-G solvation = -4106.326151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.96469 -41.24039 -39.35918 -38.48588 -36.91573 -35.62517 -34.86247 -33.92234 -33.44111 -31.83522 -30.20683 -28.98569 -27.31615 -26.09204 -24.92588 -23.89230 -23.57519 -23.36230 -22.12396 -20.44624 -20.29899 -19.25258 -18.87586 -18.69803 -17.98832 -17.72610 -16.97714 -16.80298 -16.43866 -16.15245 -15.88616 -15.66115 -15.40579 -15.17619 -14.89316 -14.51548 -14.30735 -14.12819 -13.80052 -13.73984 -13.53330 -13.24890 -13.07509 -13.01729 -12.75472 -12.66094 -12.53000 -12.37716 -12.30590 -12.14076 -11.98922 -11.82247 -11.49105 -11.38571 -11.18126 -11.00830 -10.61060 -10.50251 -10.44615 -10.13316 -8.69236 -7.87585 -5.32324 0.22129 0.72661 1.29491 1.48098 1.52166 1.60270 1.73085 2.23157 2.51019 2.77244 2.89078 3.15226 3.20744 3.29218 3.65646 3.70001 3.77533 3.86348 3.91736 3.98774 4.00787 4.06311 4.24142 4.34469 4.38589 4.51615 4.54549 4.62855 4.65593 4.68214 4.69258 4.87308 4.90494 4.94596 5.01353 5.03608 5.05015 5.13963 5.15339 5.40106 5.46352 5.65443 5.72762 6.37353 6.39199 6.89210 7.04628 7.10695 7.14262 7.82487 8.33844 9.18830 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.003646 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.157218 B = 7676.855402 C = 8538.702020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.035 3.965 3 O 0.093 5.907 4 N -0.370 5.370 5 C 0.088 3.912 6 C -0.114 4.114 7 C -0.149 4.149 8 C -0.144 4.144 9 C -0.274 4.274 10 C 0.608 3.392 11 O -0.568 6.568 12 N -0.683 5.683 13 C 0.167 3.833 14 H 0.079 0.921 15 C -0.141 4.141 16 C 0.184 3.816 17 N -0.601 5.601 18 C -0.263 4.263 19 H 0.070 0.930 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.118 3.882 27 C 0.096 3.904 28 H 0.074 0.926 29 O -0.570 6.570 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.405 0.595 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.008 0.992 43 H 0.250 0.750 44 H 0.021 0.979 45 H 0.068 0.932 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 3.578 5.386 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 O 0.034 5.966 4 N -0.078 5.078 5 C -0.073 4.073 6 C -0.133 4.133 7 C -0.186 4.186 8 C -0.182 4.182 9 C -0.281 4.281 10 C 0.393 3.607 11 O -0.448 6.448 12 N -0.333 5.333 13 C 0.062 3.938 14 H 0.097 0.903 15 C -0.181 4.181 16 C 0.058 3.942 17 N -0.326 5.326 18 C -0.393 4.393 19 H 0.088 0.912 20 C -0.239 4.239 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.008 4.008 27 C 0.035 3.965 28 H 0.091 0.909 29 O -0.377 6.377 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.242 0.758 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.086 0.914 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.620 4.583 6.656 15.837 hybrid contribution -1.367 -1.062 -1.351 2.196 sum 12.253 3.522 5.305 13.809 Atomic orbital electron populations 1.20653 0.81080 1.06091 1.05924 1.25080 0.96926 0.84414 0.96402 1.84504 1.10998 1.32925 1.68197 1.73494 0.96290 1.16408 1.21568 1.24037 0.94849 0.88561 0.99900 1.20345 0.84825 0.99763 1.08412 1.23117 0.96132 0.99606 0.99722 1.23123 1.00103 1.03851 0.91110 1.21845 0.93606 0.94973 1.17677 1.16899 0.75857 0.84251 0.83723 1.90760 1.53156 1.68614 1.32246 1.45851 1.67934 1.11417 1.08048 1.20833 0.94761 0.80476 0.97683 0.90331 1.22414 0.94189 1.02045 0.99483 1.20570 0.97489 0.93408 0.82730 1.44230 1.00456 1.73643 1.14266 1.19504 0.94143 1.15657 1.09981 0.91185 1.25678 1.00931 0.96482 1.00811 1.70152 1.18923 1.19568 1.48665 0.85309 0.79380 0.78521 0.77796 1.19127 1.21983 1.22237 1.21654 0.84600 0.97658 0.96883 1.22338 0.80894 0.98941 0.94320 0.90865 1.86455 1.19603 1.84269 1.47354 0.86932 0.86693 0.89739 0.85909 0.88688 0.85606 0.85666 0.89057 0.75815 0.90890 0.91902 0.92471 0.97421 0.94104 0.96120 0.91357 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.33 71.24 0.74 -1.01 16 2 C 0.04 0.96 7.55 25.48 0.19 1.15 16 3 O 0.09 2.57 11.06 77.00 0.85 3.42 16 4 N -0.37 -10.75 11.71 -44.78 -0.52 -11.27 16 5 C 0.09 2.56 7.08 45.15 0.32 2.88 16 6 C -0.11 -2.74 6.31 -11.54 -0.07 -2.81 16 7 C -0.15 -2.73 10.17 30.62 0.31 -2.42 16 8 C -0.14 -2.71 10.24 30.62 0.31 -2.39 16 9 C -0.27 -8.47 6.24 -18.74 -0.12 -8.58 16 10 C 0.61 20.80 7.57 86.66 0.66 21.45 16 11 O -0.57 -22.74 16.77 -4.04 -0.07 -22.80 16 12 N -0.68 -22.19 4.15 -445.70 -1.85 -24.04 16 13 C 0.17 5.54 2.47 45.02 0.11 5.65 16 14 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 15 C -0.14 -5.17 5.77 30.67 0.18 -4.99 16 16 C 0.18 8.08 5.07 86.31 0.44 8.51 16 17 N -0.60 -26.91 3.01 -698.41 -2.10 -29.01 16 18 C -0.26 -13.21 9.59 84.03 0.81 -12.40 16 19 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 20 C -0.04 -2.23 4.92 84.86 0.42 -1.81 16 21 N -0.93 -51.02 11.18 21.65 0.24 -50.78 16 22 Si 0.96 42.30 29.59 68.60 2.03 44.33 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.12 4.20 5.83 86.36 0.50 4.70 16 27 C 0.10 2.89 3.36 30.67 0.10 3.00 16 28 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 29 O -0.57 -14.48 13.21 -148.98 -1.97 -16.45 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.17 8.11 -2.39 -0.02 2.15 16 33 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.09 1.89 7.97 -2.39 -0.02 1.87 16 35 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 13.06 6.85 -92.70 -0.64 12.43 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.92 6.04 -2.39 -0.01 2.90 16 42 H 0.01 0.35 7.74 -2.39 -0.02 0.34 16 43 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 44 H 0.02 0.75 6.64 -2.39 -0.02 0.74 16 45 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 46 H 0.40 6.54 9.08 -74.06 -0.67 5.87 16 Total: -1.00 -65.44 381.90 1.23 -64.21 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.28 Total: 31.47 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.89 Total: 10.92 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.23 Total: -115.10 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.18 Total: -35.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -65.44 1.23 -64.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090437291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.155 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds