Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33487 * 126.83107 * 2 1 4 4 N 1.20661 * 113.16055 * 180.02562 * 3 2 1 5 5 C 1.30013 * 112.29559 * 359.97438 * 4 3 2 6 6 C 1.50699 * 127.32943 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49968 * 60.02951 * 6 5 4 8 8 C 1.52999 * 60.03140 * 252.52086 * 7 6 5 9 9 C 1.37357 * 126.82900 * 180.30925 * 2 1 3 10 10 C 1.47403 * 128.56504 * 0.02562 * 9 2 1 11 11 O 1.21615 * 119.99835 * 270.13029 * 10 9 2 12 12 N 1.34771 * 120.00340 * 90.13485 * 10 9 2 13 13 C 1.46494 * 120.00417 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.45727 * 35.02342 * 13 12 10 15 15 C 1.53040 * 109.45971 * 275.06804 * 13 12 10 16 16 C 1.53194 * 109.31292 * 178.61337 * 15 13 12 17 17 N 1.46926 * 108.77940 * 54.63040 * 16 15 13 18 18 C 1.36940 * 120.63065 * 126.41151 * 17 16 15 19 19 H 1.08000 * 119.99981 * 207.66799 * 18 17 16 20 20 C 1.38808 * 119.99821 * 27.66587 * 18 17 16 21 21 N 1.31620 * 119.99946 * 17.37231 * 20 18 17 22 22 Si 1.86798 * 120.00074 * 197.36553 * 20 18 17 23 23 H 1.48500 * 109.47052 * 90.00364 * 22 20 18 24 24 H 1.48499 * 109.47454 * 210.00635 * 22 20 18 25 25 H 1.48501 * 109.46940 * 330.00407 * 22 20 18 26 26 C 1.46928 * 118.74063 * 306.39732 * 17 16 15 27 27 C 1.53040 * 109.46520 * 154.99431 * 13 12 10 28 28 H 1.09002 * 109.49354 * 61.40175 * 27 13 12 29 29 O 1.42902 * 109.50098 * 301.34285 * 27 13 12 30 30 H 1.08998 * 109.46965 * 359.97111 * 1 2 3 31 31 H 1.08995 * 109.47412 * 119.98115 * 1 2 3 32 32 H 1.09003 * 109.47059 * 239.97696 * 1 2 3 33 33 H 1.09005 * 115.56374 * 205.71227 * 6 5 4 34 34 H 1.08999 * 117.50225 * 145.01816 * 7 6 5 35 35 H 1.09004 * 117.49795 * 0.02562 * 7 6 5 36 36 H 1.08999 * 117.50490 * 107.48010 * 8 7 6 37 37 H 1.09005 * 117.49423 * 252.47555 * 8 7 6 38 38 H 0.97003 * 119.99700 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.49793 * 298.55669 * 15 13 12 40 40 H 1.08997 * 109.50206 * 58.66327 * 15 13 12 41 41 H 1.09002 * 109.58433 * 294.84777 * 16 15 13 42 42 H 1.09002 * 109.58826 * 174.42079 * 16 15 13 43 43 H 0.96998 * 119.99698 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58230 * 293.81963 * 26 17 16 45 45 H 1.08997 * 109.70611 * 173.45685 * 26 17 16 46 46 H 0.96691 * 114.00443 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0684 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5022 -0.0004 6 6 4.9964 -1.2259 -0.0014 7 6 5.9427 -0.9703 1.1734 8 6 6.2609 -0.3878 -0.2051 9 6 2.3304 -1.0994 -0.0059 10 6 1.9587 -2.5258 -0.0141 11 8 1.8026 -3.1196 1.0357 12 7 1.7918 -3.1720 -1.1850 13 6 1.4229 -4.5897 -1.1932 14 1 0.7586 -4.7969 -0.3542 15 6 2.6853 -5.4457 -1.0671 16 6 2.2929 -6.9263 -1.0411 17 7 1.4801 -7.2212 -2.2290 18 6 1.8225 -8.2442 -3.0724 19 1 1.5448 -8.2004 -4.1152 20 6 2.5266 -9.3376 -2.5870 21 7 2.5715 -9.5693 -1.2922 22 14 3.4102 -10.4802 -3.7715 23 1 4.7976 -9.9957 -3.9846 24 1 3.4466 -11.8514 -3.2025 25 1 2.6887 -10.5020 -5.0693 26 6 0.2926 -6.3976 -2.4947 27 6 0.7074 -4.9230 -2.5043 28 1 1.3796 -4.7391 -3.3425 29 8 -0.4545 -4.1015 -2.6358 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5135 -0.8901 32 1 -0.3633 -0.5142 0.8898 33 1 4.9831 -2.2291 -0.4278 34 1 6.5519 -1.8052 1.5198 35 1 5.6091 -0.2790 1.9472 36 1 6.1364 0.6869 -0.3384 37 1 7.0798 -0.8392 -0.7654 38 1 1.9159 -2.6983 -2.0224 39 1 3.3390 -5.2576 -1.9187 40 1 3.2067 -5.1914 -0.1443 41 1 1.7141 -7.1352 -0.1414 42 1 3.1918 -7.5428 -1.0512 43 1 3.0632 -10.3336 -0.9530 44 1 -0.4492 -6.5634 -1.7134 45 1 -0.1305 -6.6645 -3.4631 46 1 -0.9579 -4.2590 -3.4462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090437293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = 21.345228 kcal Electronic energy + Delta-G solvation = -29678.126130 eV Core-core repulsion = 25572.597994 eV Total energy + Delta-G solvation = -4105.528136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.01021 -39.76100 -38.01082 -37.64025 -35.46644 -34.36512 -33.89248 -33.00873 -31.93461 -30.08638 -28.71621 -28.09862 -25.71519 -24.75222 -23.82988 -22.63448 -22.42281 -21.84644 -20.50582 -19.76376 -19.28371 -18.04573 -17.84423 -17.16663 -16.72768 -16.52162 -15.97849 -15.63221 -14.96270 -14.86339 -14.55156 -14.17211 -13.95705 -13.65655 -13.56616 -13.49880 -13.22789 -12.93241 -12.81024 -12.36415 -12.26518 -12.09676 -11.84760 -11.72033 -11.63245 -11.44793 -11.15975 -10.92213 -10.76565 -10.64604 -10.39354 -10.30252 -10.13319 -9.97251 -9.79885 -9.69888 -9.53514 -9.48392 -8.85052 -8.50742 -6.82484 -5.88961 -3.33345 1.16468 1.69453 2.50113 2.70791 3.30214 3.33494 3.38931 3.40417 3.58156 3.81019 4.10415 4.31258 4.46250 4.59229 4.67273 4.71831 4.82313 4.90270 5.16785 5.17872 5.24135 5.28005 5.34108 5.39438 5.42533 5.48541 5.51079 5.65808 5.70706 5.73626 5.83607 5.86918 5.90424 6.04200 6.22769 6.42212 6.44935 6.60394 6.71439 6.76619 7.23532 7.55140 7.61216 7.69070 7.84877 8.06842 8.28351 8.33258 9.08824 9.71132 10.26599 11.19573 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003149 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.107105 B = 8889.589630 C =10125.215744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 O 0.095 5.905 4 N -0.357 5.357 5 C 0.089 3.911 6 C -0.092 4.092 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.241 4.241 10 C 0.597 3.403 11 O -0.525 6.525 12 N -0.703 5.703 13 C 0.163 3.837 14 H 0.090 0.910 15 C -0.147 4.147 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.261 4.261 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.898 5.898 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.121 3.879 27 C 0.081 3.919 28 H 0.057 0.943 29 O -0.572 6.572 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.094 0.906 43 H 0.256 0.744 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 19.473 -0.226 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 O 0.033 5.967 4 N -0.063 5.063 5 C -0.073 4.073 6 C -0.111 4.111 7 C -0.194 4.194 8 C -0.199 4.199 9 C -0.248 4.248 10 C 0.381 3.619 11 O -0.401 6.401 12 N -0.352 5.352 13 C 0.059 3.941 14 H 0.108 0.892 15 C -0.188 4.188 16 C 0.045 3.955 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.007 4.007 27 C 0.020 3.980 28 H 0.075 0.925 29 O -0.376 6.376 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.614 20.172 1.188 20.216 hybrid contribution 0.048 -1.400 -1.489 2.045 sum 0.663 18.771 -0.301 18.785 Atomic orbital electron populations 1.20487 0.83026 1.04955 1.05164 1.24616 0.96017 0.85038 0.99021 1.84528 1.11080 1.32947 1.68127 1.73529 0.95893 1.16361 1.20548 1.23722 0.94300 0.88547 1.00692 1.20287 0.84787 0.99723 1.06317 1.23043 1.01175 1.03606 0.91611 1.23044 0.97052 1.00076 0.99682 1.21928 0.92522 0.95520 1.14875 1.16821 0.77123 0.83652 0.84345 1.90841 1.50351 1.67286 1.31609 1.46070 1.69403 1.12071 1.07663 1.21084 0.96740 0.78293 0.97975 0.89209 1.22623 0.95818 0.99128 1.01202 1.20840 0.97096 0.89186 0.88376 1.44046 1.24349 1.34791 1.27981 1.19172 1.33373 0.96343 0.90166 0.91479 1.25065 1.01783 0.96649 0.95813 1.70034 1.43408 1.29219 1.11514 0.86267 0.79999 0.79978 0.80350 1.21331 1.21659 1.20387 1.21519 0.90851 0.88571 0.99718 1.22777 0.86269 0.92725 0.96269 0.92544 1.86458 1.40983 1.63634 1.46529 0.89333 0.88341 0.88531 0.85235 0.87494 0.88508 0.88030 0.87711 0.76852 0.92256 0.91863 0.95732 0.88784 0.93393 0.95271 0.92107 0.77904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.33 36.01 0.37 -0.25 16 2 C 0.02 0.19 7.55 -34.63 -0.26 -0.07 16 3 O 0.09 1.14 11.06 18.67 0.21 1.35 16 4 N -0.36 -4.72 11.71 34.78 0.41 -4.31 16 5 C 0.09 1.18 7.08 -79.77 -0.56 0.62 16 6 C -0.09 -1.08 6.32 -91.73 -0.58 -1.66 16 7 C -0.16 -1.59 10.23 -26.73 -0.27 -1.87 16 8 C -0.16 -1.54 10.17 -26.69 -0.27 -1.82 16 9 C -0.24 -3.30 6.24 -102.89 -0.64 -3.94 16 10 C 0.60 9.46 7.60 -12.53 -0.10 9.36 16 11 O -0.52 -10.36 16.77 5.26 0.09 -10.27 16 12 N -0.70 -10.27 4.91 -54.85 -0.27 -10.54 16 13 C 0.16 2.80 2.12 -67.89 -0.14 2.65 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 16 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 17 N -0.59 -13.96 3.00 -172.31 -0.52 -14.48 16 18 C -0.26 -6.82 9.59 -15.06 -0.14 -6.97 16 19 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 20 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 21 N -0.90 -25.35 11.19 55.49 0.62 -24.73 16 22 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.12 2.36 6.14 -3.71 -0.02 2.34 16 27 C 0.08 1.29 3.14 -26.61 -0.08 1.21 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -7.83 13.16 -35.23 -0.46 -8.30 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.01 7.97 -51.93 -0.41 0.59 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.97 8.59 -40.82 -0.35 4.62 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 46 H 0.37 3.60 9.08 45.56 0.41 4.01 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -32.15 386.16 -8.19 -40.35 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.09 Total: 8.52 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.97 Total: 0.71 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.17 Total: -17.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.15 -8.19 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090437293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.692 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds