Wall clock time and date at job start Tue Mar 31 2020 18:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33487 * 126.83107 * 2 1 4 4 N 1.20661 * 113.16055 * 180.02562 * 3 2 1 5 5 C 1.30013 * 112.29559 * 359.97438 * 4 3 2 6 6 C 1.50699 * 127.32943 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49968 * 60.02951 * 6 5 4 8 8 C 1.52999 * 60.03140 * 252.52086 * 7 6 5 9 9 C 1.37357 * 126.82900 * 180.30925 * 2 1 3 10 10 C 1.47403 * 128.56504 * 0.02562 * 9 2 1 11 11 O 1.21615 * 119.99835 * 270.13029 * 10 9 2 12 12 N 1.34771 * 120.00340 * 90.13485 * 10 9 2 13 13 C 1.46494 * 120.00417 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.45727 * 35.02342 * 13 12 10 15 15 C 1.53040 * 109.45971 * 275.06804 * 13 12 10 16 16 C 1.53194 * 109.31292 * 178.61337 * 15 13 12 17 17 N 1.46926 * 108.77940 * 54.63040 * 16 15 13 18 18 C 1.36940 * 120.63065 * 126.41151 * 17 16 15 19 19 H 1.08000 * 119.99981 * 207.66799 * 18 17 16 20 20 C 1.38808 * 119.99821 * 27.66587 * 18 17 16 21 21 N 1.31620 * 119.99946 * 17.37231 * 20 18 17 22 22 Si 1.86798 * 120.00074 * 197.36553 * 20 18 17 23 23 H 1.48500 * 109.47052 * 90.00364 * 22 20 18 24 24 H 1.48499 * 109.47454 * 210.00635 * 22 20 18 25 25 H 1.48501 * 109.46940 * 330.00407 * 22 20 18 26 26 C 1.46928 * 118.74063 * 306.39732 * 17 16 15 27 27 C 1.53040 * 109.46520 * 154.99431 * 13 12 10 28 28 H 1.09002 * 109.49354 * 61.40175 * 27 13 12 29 29 O 1.42902 * 109.50098 * 301.34285 * 27 13 12 30 30 H 1.08998 * 109.46965 * 359.97111 * 1 2 3 31 31 H 1.08995 * 109.47412 * 119.98115 * 1 2 3 32 32 H 1.09003 * 109.47059 * 239.97696 * 1 2 3 33 33 H 1.09005 * 115.56374 * 205.71227 * 6 5 4 34 34 H 1.08999 * 117.50225 * 145.01816 * 7 6 5 35 35 H 1.09004 * 117.49795 * 0.02562 * 7 6 5 36 36 H 1.08999 * 117.50490 * 107.48010 * 8 7 6 37 37 H 1.09005 * 117.49423 * 252.47555 * 8 7 6 38 38 H 0.97003 * 119.99700 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.49793 * 298.55669 * 15 13 12 40 40 H 1.08997 * 109.50206 * 58.66327 * 15 13 12 41 41 H 1.09002 * 109.58433 * 294.84777 * 16 15 13 42 42 H 1.09002 * 109.58826 * 174.42079 * 16 15 13 43 43 H 0.96998 * 119.99698 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58230 * 293.81963 * 26 17 16 45 45 H 1.08997 * 109.70611 * 173.45685 * 26 17 16 46 46 H 0.96691 * 114.00443 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0684 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5022 -0.0004 6 6 4.9964 -1.2259 -0.0014 7 6 5.9427 -0.9703 1.1734 8 6 6.2609 -0.3878 -0.2051 9 6 2.3304 -1.0994 -0.0059 10 6 1.9587 -2.5258 -0.0141 11 8 1.8026 -3.1196 1.0357 12 7 1.7918 -3.1720 -1.1850 13 6 1.4229 -4.5897 -1.1932 14 1 0.7586 -4.7969 -0.3542 15 6 2.6853 -5.4457 -1.0671 16 6 2.2929 -6.9263 -1.0411 17 7 1.4801 -7.2212 -2.2290 18 6 1.8225 -8.2442 -3.0724 19 1 1.5448 -8.2004 -4.1152 20 6 2.5266 -9.3376 -2.5870 21 7 2.5715 -9.5693 -1.2922 22 14 3.4102 -10.4802 -3.7715 23 1 4.7976 -9.9957 -3.9846 24 1 3.4466 -11.8514 -3.2025 25 1 2.6887 -10.5020 -5.0693 26 6 0.2926 -6.3976 -2.4947 27 6 0.7074 -4.9230 -2.5043 28 1 1.3796 -4.7391 -3.3425 29 8 -0.4545 -4.1015 -2.6358 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5135 -0.8901 32 1 -0.3633 -0.5142 0.8898 33 1 4.9831 -2.2291 -0.4278 34 1 6.5519 -1.8052 1.5198 35 1 5.6091 -0.2790 1.9472 36 1 6.1364 0.6869 -0.3384 37 1 7.0798 -0.8392 -0.7654 38 1 1.9159 -2.6983 -2.0224 39 1 3.3390 -5.2576 -1.9187 40 1 3.2067 -5.1914 -0.1443 41 1 1.7141 -7.1352 -0.1414 42 1 3.1918 -7.5428 -1.0512 43 1 3.0632 -10.3336 -0.9530 44 1 -0.4492 -6.5634 -1.7134 45 1 -0.1305 -6.6645 -3.4631 46 1 -0.9579 -4.2590 -3.4462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090437293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:26 Heat of formation + Delta-G solvation = -1.339841 kcal Electronic energy + Delta-G solvation = -29679.109828 eV Core-core repulsion = 25572.597994 eV Total energy + Delta-G solvation = -4106.511834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.98241 -41.11996 -39.42626 -38.51308 -36.96606 -35.80855 -34.87383 -33.93829 -33.70385 -31.74608 -30.23803 -28.99996 -27.28248 -25.97784 -24.94272 -23.96679 -23.49466 -23.33662 -21.73979 -21.24871 -20.33505 -19.22305 -18.87913 -18.69337 -18.00768 -17.68604 -17.42489 -16.79780 -16.49251 -15.96787 -15.81908 -15.66839 -15.45200 -15.02640 -14.92010 -14.54687 -14.32731 -14.14163 -13.89449 -13.68559 -13.60720 -13.28061 -13.08939 -12.98242 -12.73435 -12.66394 -12.54989 -12.41828 -12.32496 -12.12481 -12.05270 -11.89399 -11.57453 -11.45388 -11.19806 -11.02794 -10.63096 -10.57491 -10.44255 -10.14989 -8.76766 -7.90088 -5.37285 0.23278 0.70654 1.27261 1.49067 1.50602 1.59191 1.72200 2.18435 2.49550 2.74669 2.87346 3.11240 3.20069 3.27370 3.62425 3.68240 3.78088 3.83851 3.88824 3.95963 3.97967 4.05417 4.21744 4.34002 4.39021 4.52251 4.56713 4.62179 4.63975 4.66652 4.69380 4.83577 4.88080 4.92115 4.99058 5.01258 5.07335 5.11730 5.13016 5.34831 5.38831 5.60718 5.66331 6.34080 6.39477 6.89491 7.06121 7.10127 7.12415 7.78512 8.30628 9.17148 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003149 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.107105 B = 8889.589630 C =10125.215744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 O 0.097 5.903 4 N -0.369 5.369 5 C 0.085 3.915 6 C -0.116 4.116 7 C -0.156 4.156 8 C -0.143 4.143 9 C -0.272 4.272 10 C 0.606 3.394 11 O -0.570 6.570 12 N -0.687 5.687 13 C 0.171 3.829 14 H 0.062 0.938 15 C -0.130 4.130 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.266 4.266 19 H 0.077 0.923 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.264 1.264 26 C 0.117 3.883 27 C 0.104 3.896 28 H 0.073 0.927 29 O -0.568 6.568 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.057 0.943 41 H -0.007 1.007 42 H 0.063 0.937 43 H 0.250 0.750 44 H 0.014 0.986 45 H 0.076 0.924 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 21.525 -2.321 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 O 0.037 5.963 4 N -0.076 5.076 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.194 4.194 8 C -0.180 4.180 9 C -0.279 4.279 10 C 0.391 3.609 11 O -0.449 6.449 12 N -0.336 5.336 13 C 0.066 3.934 14 H 0.080 0.920 15 C -0.170 4.170 16 C 0.054 3.946 17 N -0.328 5.328 18 C -0.395 4.395 19 H 0.095 0.905 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.189 1.189 26 C -0.009 4.009 27 C 0.043 3.957 28 H 0.091 0.909 29 O -0.376 6.376 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.011 0.989 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.032 0.968 45 H 0.095 0.905 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.328 22.282 -0.973 22.306 hybrid contribution 0.013 -1.985 -0.819 2.147 sum 0.341 20.297 -1.792 20.379 Atomic orbital electron populations 1.20717 0.80412 1.07159 1.05452 1.25175 0.97181 0.84019 0.96107 1.84519 1.10904 1.32984 1.67882 1.73515 0.96447 1.16238 1.21386 1.23964 0.94754 0.88654 1.00277 1.20401 0.85129 0.99987 1.07990 1.23113 1.00705 1.03968 0.91634 1.23100 0.96126 0.99706 0.99036 1.21726 0.93516 0.94668 1.18038 1.17011 0.75888 0.84342 0.83681 1.90821 1.52312 1.68550 1.33193 1.45800 1.68715 1.10862 1.08242 1.20737 0.95350 0.79423 0.97891 0.92018 1.22339 0.96853 0.96453 1.01395 1.20546 0.95310 0.91419 0.87356 1.44251 1.25913 1.35073 1.27550 1.19575 1.32544 0.96509 0.90914 0.90503 1.25844 1.02991 0.98476 0.97125 1.70201 1.44678 1.29834 1.13406 0.85247 0.78825 0.77434 0.78806 1.21146 1.22597 1.18880 1.21695 0.89145 0.90211 0.99864 1.22273 0.87241 0.90436 0.95765 0.90928 1.86431 1.40335 1.62457 1.48342 0.86287 0.87269 0.88689 0.85663 0.86310 0.89119 0.88289 0.85750 0.75084 0.91120 0.92402 0.98923 0.91872 0.94049 0.96821 0.90530 0.75283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.33 71.24 0.74 -0.31 16 2 C 0.04 0.81 7.55 25.48 0.19 1.00 16 3 O 0.10 2.17 11.06 77.04 0.85 3.03 16 4 N -0.37 -9.30 11.71 -44.79 -0.52 -9.82 16 5 C 0.08 2.19 7.08 45.15 0.32 2.51 16 6 C -0.12 -2.64 6.32 -11.52 -0.07 -2.72 16 7 C -0.16 -3.05 10.23 30.59 0.31 -2.74 16 8 C -0.14 -2.51 10.17 30.62 0.31 -2.20 16 9 C -0.27 -7.18 6.24 -18.75 -0.12 -7.29 16 10 C 0.61 18.93 7.60 86.66 0.66 19.59 16 11 O -0.57 -22.93 16.77 -4.08 -0.07 -23.00 16 12 N -0.69 -19.19 4.91 -445.70 -2.19 -21.38 16 13 C 0.17 5.79 2.12 45.02 0.10 5.88 16 14 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 15 C -0.13 -4.99 5.65 30.67 0.17 -4.81 16 16 C 0.18 8.70 5.31 86.36 0.46 9.16 16 17 N -0.60 -28.84 3.00 -699.08 -2.09 -30.94 16 18 C -0.27 -13.81 9.59 84.03 0.81 -13.01 16 19 H 0.08 3.78 7.89 -2.91 -0.02 3.76 16 20 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 21 N -0.94 -54.61 11.19 21.65 0.24 -54.37 16 22 Si 0.97 43.22 29.59 68.60 2.03 45.25 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 C 0.12 4.46 6.14 86.36 0.53 4.99 16 27 C 0.10 3.12 3.14 30.67 0.10 3.22 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 O -0.57 -13.76 13.16 -148.98 -1.96 -15.72 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.81 7.97 -2.39 -0.02 1.79 16 37 H 0.12 1.68 8.14 -2.38 -0.02 1.67 16 38 H 0.41 9.30 8.59 -92.71 -0.80 8.50 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.06 3.43 6.04 -2.39 -0.01 3.42 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 46 H 0.40 6.03 9.08 -74.06 -0.67 5.35 16 Total: -1.00 -71.67 386.16 0.76 -70.91 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.45 Total: 24.97 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 4.92 Total: 11.07 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -4.57 Total: -116.51 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.18 Total: -35.69 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.67 0.76 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090437293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.574 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds