Wall clock time and date at job start Tue Mar 31 2020 19:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30010 * 127.34156 * 2 1 4 4 O 1.20652 * 112.30856 * 180.30044 * 3 2 1 5 5 C 1.33503 * 113.15329 * 359.70993 * 4 3 2 6 6 C 1.50696 * 126.82767 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50097 * 8.77965 * 6 5 4 8 8 C 1.52999 * 117.50400 * 300.11480 * 6 5 4 9 9 C 1.37364 * 106.33720 * 0.02562 * 5 4 3 10 10 C 1.47402 * 128.56051 * 179.97438 * 9 5 4 11 11 O 1.21607 * 119.99936 * 89.99509 * 10 9 5 12 12 N 1.34778 * 119.99928 * 270.00097 * 10 9 5 13 13 C 1.46496 * 119.99947 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46107 * 35.02466 * 13 12 10 15 15 C 1.53035 * 109.45061 * 275.06076 * 13 12 10 16 16 C 1.52764 * 109.37934 * 301.22410 * 15 13 12 17 17 N 1.46926 * 109.01135 * 305.58582 * 16 15 13 18 18 C 1.36928 * 120.63170 * 233.58503 * 17 16 15 19 19 H 1.08001 * 120.00114 * 151.80747 * 18 17 16 20 20 C 1.38812 * 120.00102 * 331.80110 * 18 17 16 21 21 N 1.31617 * 120.00308 * 335.56350 * 20 18 17 22 22 Si 1.86804 * 119.99777 * 155.28945 * 20 18 17 23 23 H 1.48503 * 109.46743 * 180.27744 * 22 20 18 24 24 H 1.48500 * 109.47225 * 300.27498 * 22 20 18 25 25 H 1.48501 * 109.47206 * 60.27771 * 22 20 18 26 26 C 1.46929 * 118.73483 * 53.31107 * 17 16 15 27 27 C 1.53040 * 109.45801 * 154.99451 * 13 12 10 28 28 H 1.09003 * 109.52208 * 178.60857 * 27 13 12 29 29 O 1.42897 * 109.50012 * 298.68995 * 27 13 12 30 30 H 1.09004 * 109.47203 * 270.15307 * 1 2 3 31 31 H 1.09005 * 109.46564 * 30.14949 * 1 2 3 32 32 H 1.08992 * 109.47464 * 150.14409 * 1 2 3 33 33 H 1.08999 * 115.54560 * 154.44197 * 6 5 4 34 34 H 1.08998 * 117.49746 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.49934 * 145.01904 * 7 6 5 36 36 H 1.08992 * 117.50061 * 214.98256 * 8 6 5 37 37 H 1.09001 * 117.49323 * 359.97438 * 8 6 5 38 38 H 0.96999 * 119.99743 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.50055 * 61.29856 * 15 13 12 40 40 H 1.09004 * 109.50210 * 181.37069 * 15 13 12 41 41 H 1.09003 * 109.51000 * 185.70458 * 16 15 13 42 42 H 1.09005 * 109.43274 * 65.43079 * 16 15 13 43 43 H 0.97007 * 119.99706 * 353.96844 * 21 20 18 44 44 H 1.09001 * 109.58752 * 66.42659 * 26 17 16 45 45 H 1.08997 * 109.58400 * 186.71234 * 26 17 16 46 46 H 0.96697 * 113.99811 * 179.83931 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6010 -0.0046 6 6 4.9711 -1.3248 -0.0112 7 6 6.2362 -0.4874 0.1870 8 6 5.9109 -1.0691 -1.1911 9 6 2.3990 -1.1697 0.0026 10 6 2.0399 -2.5993 0.0063 11 8 1.8973 -3.1877 1.0609 12 7 1.8696 -3.2543 -1.1593 13 6 1.5122 -4.6749 -1.1557 14 1 0.8557 -4.8821 -0.3105 15 6 2.7823 -5.5197 -1.0336 16 6 3.7147 -5.2050 -2.2021 17 7 2.9831 -5.3934 -3.4623 18 6 3.4827 -6.2064 -4.4443 19 1 2.8103 -6.7041 -5.1273 20 6 4.8535 -6.3908 -4.5619 21 7 5.6823 -5.4777 -4.1021 22 14 5.5220 -7.9387 -5.3662 23 1 7.0064 -7.8970 -5.3623 24 1 5.0583 -9.1295 -4.6096 25 1 5.0327 -8.0202 -6.7659 26 6 1.7022 -4.6975 -3.6462 27 6 0.7897 -5.0222 -2.4594 28 1 0.5451 -6.0844 -2.4685 29 8 -0.4119 -4.2552 -2.5577 30 1 -0.3634 0.0027 1.0277 31 1 -0.3632 0.8887 -0.5162 32 1 -0.3634 -0.8912 -0.5115 33 1 4.9598 -2.3280 0.4150 34 1 6.1125 0.5871 0.3217 35 1 7.0573 -0.9399 0.7430 36 1 6.5181 -1.9038 -1.5411 37 1 5.5729 -0.3775 -1.9629 38 1 1.9831 -2.7848 -2.0005 39 1 3.2840 -5.2888 -0.0940 40 1 2.5194 -6.5774 -1.0553 41 1 4.5730 -5.8764 -2.1741 42 1 4.0539 -4.1718 -2.1273 43 1 5.3375 -4.6377 -3.7606 44 1 1.8738 -3.6220 -3.6916 45 1 1.2342 -5.0322 -4.5720 46 1 -0.9207 -4.4228 -3.3627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090438375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:38 Heat of formation + Delta-G solvation = 21.467290 kcal Electronic energy + Delta-G solvation = -30664.718076 eV Core-core repulsion = 26559.195233 eV Total energy + Delta-G solvation = -4105.522843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.90536 -39.94759 -38.06728 -37.44524 -35.70272 -34.60150 -34.25527 -32.10902 -31.48250 -30.24964 -28.91005 -28.60178 -25.50956 -24.60105 -23.61975 -22.59489 -22.48375 -21.87165 -20.93594 -19.60062 -18.86109 -18.10016 -17.75656 -17.53903 -16.86823 -16.59332 -15.92482 -15.62327 -14.77134 -14.69095 -14.56133 -14.22180 -13.87532 -13.63395 -13.61911 -13.48176 -13.37443 -13.05792 -12.81873 -12.49341 -12.29863 -12.11266 -12.01958 -11.68210 -11.49865 -11.24304 -11.06917 -10.87402 -10.83481 -10.56982 -10.44320 -10.19976 -10.12420 -10.01134 -9.91892 -9.82812 -9.38610 -9.19410 -8.82332 -8.48406 -7.04629 -6.19609 -3.38885 1.22084 1.85991 2.54309 2.73306 3.37522 3.42072 3.45676 3.63173 3.67593 4.02128 4.13942 4.26801 4.50228 4.57814 4.69397 4.78029 4.92681 5.09226 5.14950 5.20599 5.27599 5.34918 5.36643 5.44853 5.49354 5.50627 5.54135 5.56363 5.74469 5.79545 5.82965 5.89149 5.93965 6.01077 6.04048 6.26009 6.33023 6.41821 6.47466 6.70306 6.89238 7.04215 7.65493 7.74694 7.88200 8.16040 8.31176 8.43784 8.94852 9.69003 10.10847 11.08537 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.004323 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.191642 B = 6475.360838 C = 7980.551274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.359 5.359 4 O 0.094 5.906 5 C 0.056 3.944 6 C -0.097 4.097 7 C -0.163 4.163 8 C -0.150 4.150 9 C -0.244 4.244 10 C 0.601 3.399 11 O -0.535 6.535 12 N -0.692 5.692 13 C 0.165 3.835 14 H 0.083 0.917 15 C -0.149 4.149 16 C 0.152 3.848 17 N -0.592 5.592 18 C -0.356 4.356 19 H 0.056 0.944 20 C -0.018 4.018 21 N -0.911 5.911 22 Si 1.064 2.936 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.120 3.880 27 C 0.077 3.923 28 H 0.069 0.931 29 O -0.570 6.570 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.020 0.980 43 H 0.269 0.731 44 H 0.020 0.980 45 H 0.061 0.939 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 8.322 6.007 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 N -0.066 5.066 4 O 0.033 5.967 5 C -0.008 4.008 6 C -0.116 4.116 7 C -0.200 4.200 8 C -0.187 4.187 9 C -0.251 4.251 10 C 0.385 3.615 11 O -0.412 6.412 12 N -0.342 5.342 13 C 0.061 3.939 14 H 0.101 0.899 15 C -0.189 4.189 16 C 0.026 3.974 17 N -0.318 5.318 18 C -0.485 4.485 19 H 0.074 0.926 20 C -0.221 4.221 21 N -0.550 5.550 22 Si 0.893 3.107 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.007 4.007 27 C 0.016 3.984 28 H 0.087 0.913 29 O -0.375 6.375 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.240 0.760 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.079 0.921 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.324 8.583 6.935 11.852 hybrid contribution -1.793 0.017 -0.626 1.899 sum -6.117 8.600 6.310 12.296 Atomic orbital electron populations 1.20220 0.85132 1.04235 1.03812 1.24717 0.98537 0.86524 1.00841 1.73590 0.89070 1.23286 1.20645 1.84482 1.21503 1.22466 1.68258 1.23573 0.95644 0.83278 0.98260 1.20553 0.83916 0.99504 1.07626 1.23094 0.96722 0.99939 1.00198 1.23179 1.00333 1.04015 0.91199 1.21856 0.92445 0.95500 1.15281 1.16786 0.76860 0.83650 0.84202 1.90793 1.51103 1.68103 1.31202 1.45915 1.68988 1.11209 1.08110 1.20892 0.96050 0.79762 0.97222 0.89866 1.22413 0.96334 0.99561 1.00558 1.20874 0.94431 0.98689 0.83394 1.44031 1.20381 1.53408 1.13935 1.19941 0.92669 1.23421 1.12427 0.92576 1.25846 0.92602 1.03493 1.00160 1.70797 1.36870 1.06125 1.41238 0.83545 0.76224 0.75314 0.75615 1.21013 1.21962 1.21962 1.21532 0.88555 0.95168 0.95448 1.22711 0.84558 0.94834 0.96309 0.91340 1.86467 1.36613 1.68147 1.46236 0.89725 0.90017 0.89531 0.84237 0.87835 0.87366 0.86548 0.88060 0.76046 0.91580 0.90961 0.89966 0.96162 0.91998 0.96207 0.92065 0.77821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.49 36.01 0.38 -0.47 16 2 C 0.06 0.80 7.59 -79.77 -0.61 0.20 16 3 N -0.36 -5.31 12.01 34.78 0.42 -4.89 16 4 O 0.09 1.34 10.86 18.63 0.20 1.54 16 5 C 0.06 0.79 7.00 -34.63 -0.24 0.55 16 6 C -0.10 -1.21 6.14 -91.77 -0.56 -1.78 16 7 C -0.16 -1.62 10.19 -26.69 -0.27 -1.89 16 8 C -0.15 -1.73 10.24 -26.69 -0.27 -2.00 16 9 C -0.24 -3.76 6.24 -102.89 -0.64 -4.40 16 10 C 0.60 10.19 7.60 -12.53 -0.10 10.09 16 11 O -0.53 -10.56 16.77 5.27 0.09 -10.48 16 12 N -0.69 -11.22 4.15 -54.85 -0.23 -11.44 16 13 C 0.17 2.79 2.47 -67.89 -0.17 2.62 16 14 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -2.71 5.75 -26.83 -0.15 -2.86 16 16 C 0.15 3.24 4.41 -3.93 -0.02 3.22 16 17 N -0.59 -13.34 2.85 -172.58 -0.49 -13.83 16 18 C -0.36 -9.16 9.49 -15.06 -0.14 -9.31 16 19 H 0.06 1.46 7.94 -52.49 -0.42 1.04 16 20 C -0.02 -0.48 4.70 -17.43 -0.08 -0.56 16 21 N -0.91 -25.33 12.41 55.49 0.69 -24.65 16 22 Si 1.06 23.81 29.99 -169.99 -5.10 18.71 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.12 2.23 5.85 -3.71 -0.02 2.21 16 27 C 0.08 1.23 3.36 -26.61 -0.09 1.14 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 O -0.57 -8.00 13.21 -35.23 -0.47 -8.47 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.14 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.10 0.96 8.02 -51.93 -0.42 0.54 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.40 6.48 6.85 -40.82 -0.28 6.20 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 2.01 6.32 -51.93 -0.33 1.68 16 42 H 0.02 0.44 7.46 -51.93 -0.39 0.05 16 43 H 0.27 7.47 6.70 -40.82 -0.27 7.20 16 44 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.38 3.74 9.08 45.56 0.41 4.16 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -31.02 381.01 -8.00 -39.02 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.86 Total: 11.99 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.99 Total: -3.25 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.39 Total: -54.81 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.17 Total: -17.40 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.10 Total: 18.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.02 -8.00 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090438375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.484 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds