Wall clock time and date at job start Tue Mar 31 2020 19:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30010 * 127.34156 * 2 1 4 4 O 1.20652 * 112.30856 * 180.30044 * 3 2 1 5 5 C 1.33503 * 113.15329 * 359.70993 * 4 3 2 6 6 C 1.50696 * 126.82767 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50097 * 8.77965 * 6 5 4 8 8 C 1.52999 * 117.50400 * 300.11480 * 6 5 4 9 9 C 1.37364 * 106.33720 * 0.02562 * 5 4 3 10 10 C 1.47402 * 128.56051 * 179.97438 * 9 5 4 11 11 O 1.21607 * 119.99936 * 89.99509 * 10 9 5 12 12 N 1.34778 * 119.99928 * 270.00097 * 10 9 5 13 13 C 1.46496 * 119.99947 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46107 * 35.02466 * 13 12 10 15 15 C 1.53035 * 109.45061 * 275.06076 * 13 12 10 16 16 C 1.52764 * 109.37934 * 301.22410 * 15 13 12 17 17 N 1.46926 * 109.01135 * 305.58582 * 16 15 13 18 18 C 1.36928 * 120.63170 * 233.58503 * 17 16 15 19 19 H 1.08001 * 120.00114 * 151.80747 * 18 17 16 20 20 C 1.38812 * 120.00102 * 331.80110 * 18 17 16 21 21 N 1.31617 * 120.00308 * 335.56350 * 20 18 17 22 22 Si 1.86804 * 119.99777 * 155.28945 * 20 18 17 23 23 H 1.48503 * 109.46743 * 180.27744 * 22 20 18 24 24 H 1.48500 * 109.47225 * 300.27498 * 22 20 18 25 25 H 1.48501 * 109.47206 * 60.27771 * 22 20 18 26 26 C 1.46929 * 118.73483 * 53.31107 * 17 16 15 27 27 C 1.53040 * 109.45801 * 154.99451 * 13 12 10 28 28 H 1.09003 * 109.52208 * 178.60857 * 27 13 12 29 29 O 1.42897 * 109.50012 * 298.68995 * 27 13 12 30 30 H 1.09004 * 109.47203 * 270.15307 * 1 2 3 31 31 H 1.09005 * 109.46564 * 30.14949 * 1 2 3 32 32 H 1.08992 * 109.47464 * 150.14409 * 1 2 3 33 33 H 1.08999 * 115.54560 * 154.44197 * 6 5 4 34 34 H 1.08998 * 117.49746 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.49934 * 145.01904 * 7 6 5 36 36 H 1.08992 * 117.50061 * 214.98256 * 8 6 5 37 37 H 1.09001 * 117.49323 * 359.97438 * 8 6 5 38 38 H 0.96999 * 119.99743 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.50055 * 61.29856 * 15 13 12 40 40 H 1.09004 * 109.50210 * 181.37069 * 15 13 12 41 41 H 1.09003 * 109.51000 * 185.70458 * 16 15 13 42 42 H 1.09005 * 109.43274 * 65.43079 * 16 15 13 43 43 H 0.97007 * 119.99706 * 353.96844 * 21 20 18 44 44 H 1.09001 * 109.58752 * 66.42659 * 26 17 16 45 45 H 1.08997 * 109.58400 * 186.71234 * 26 17 16 46 46 H 0.96697 * 113.99811 * 179.83931 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6010 -0.0046 6 6 4.9711 -1.3248 -0.0112 7 6 6.2362 -0.4874 0.1870 8 6 5.9109 -1.0691 -1.1911 9 6 2.3990 -1.1697 0.0026 10 6 2.0399 -2.5993 0.0063 11 8 1.8973 -3.1877 1.0609 12 7 1.8696 -3.2543 -1.1593 13 6 1.5122 -4.6749 -1.1557 14 1 0.8557 -4.8821 -0.3105 15 6 2.7823 -5.5197 -1.0336 16 6 3.7147 -5.2050 -2.2021 17 7 2.9831 -5.3934 -3.4623 18 6 3.4827 -6.2064 -4.4443 19 1 2.8103 -6.7041 -5.1273 20 6 4.8535 -6.3908 -4.5619 21 7 5.6823 -5.4777 -4.1021 22 14 5.5220 -7.9387 -5.3662 23 1 7.0064 -7.8970 -5.3623 24 1 5.0583 -9.1295 -4.6096 25 1 5.0327 -8.0202 -6.7659 26 6 1.7022 -4.6975 -3.6462 27 6 0.7897 -5.0222 -2.4594 28 1 0.5451 -6.0844 -2.4685 29 8 -0.4119 -4.2552 -2.5577 30 1 -0.3634 0.0027 1.0277 31 1 -0.3632 0.8887 -0.5162 32 1 -0.3634 -0.8912 -0.5115 33 1 4.9598 -2.3280 0.4150 34 1 6.1125 0.5871 0.3217 35 1 7.0573 -0.9399 0.7430 36 1 6.5181 -1.9038 -1.5411 37 1 5.5729 -0.3775 -1.9629 38 1 1.9831 -2.7848 -2.0005 39 1 3.2840 -5.2888 -0.0940 40 1 2.5194 -6.5774 -1.0553 41 1 4.5730 -5.8764 -2.1741 42 1 4.0539 -4.1718 -2.1273 43 1 5.3375 -4.6377 -3.7606 44 1 1.8738 -3.6220 -3.6916 45 1 1.2342 -5.0322 -4.5720 46 1 -0.9207 -4.4228 -3.3627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090438375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:37 Heat of formation + Delta-G solvation = 0.930123 kcal Electronic energy + Delta-G solvation = -30665.608634 eV Core-core repulsion = 26559.195233 eV Total energy + Delta-G solvation = -4106.413401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.02309 -41.35847 -39.49986 -38.41385 -37.16057 -35.78224 -35.69947 -33.63257 -32.84138 -31.81783 -30.21123 -29.79705 -27.21039 -25.95640 -24.66028 -24.10302 -23.52540 -23.38453 -22.23965 -20.70004 -20.38869 -19.53008 -19.15249 -18.85584 -18.14183 -17.71232 -17.04056 -17.01168 -16.39595 -16.21892 -15.90076 -15.60020 -15.39572 -15.21275 -14.98871 -14.42216 -14.38746 -14.33905 -14.04217 -13.93842 -13.81568 -13.49046 -13.12670 -12.71898 -12.61287 -12.55161 -12.50213 -12.48854 -12.25504 -12.11765 -11.89750 -11.76356 -11.51108 -11.46707 -11.20780 -11.11601 -11.03948 -10.40841 -10.30001 -10.23602 -8.92985 -8.21906 -5.39755 0.09367 0.74371 1.22260 1.58002 1.62124 1.68038 1.86421 2.11661 2.64721 2.72336 2.97615 3.04352 3.08176 3.24478 3.52193 3.54558 3.61860 3.74165 3.84703 3.88746 3.94798 4.10686 4.12659 4.23523 4.34681 4.36742 4.45523 4.52444 4.53241 4.64265 4.69576 4.73606 4.83096 4.85836 4.88860 4.97302 5.00064 5.02939 5.13910 5.16773 5.24715 5.37686 5.85564 6.30408 6.42207 6.79245 6.96510 7.04254 7.05435 7.75895 8.19266 9.03538 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.004323 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.191642 B = 6475.360838 C = 7980.551274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.058 3.942 3 N -0.370 5.370 4 O 0.093 5.907 5 C 0.066 3.934 6 C -0.117 4.117 7 C -0.136 4.136 8 C -0.153 4.153 9 C -0.271 4.271 10 C 0.608 3.392 11 O -0.565 6.565 12 N -0.684 5.684 13 C 0.168 3.832 14 H 0.083 0.917 15 C -0.137 4.137 16 C 0.165 3.835 17 N -0.607 5.607 18 C -0.358 4.358 19 H 0.054 0.946 20 C -0.066 4.066 21 N -0.937 5.937 22 Si 1.109 2.891 23 H -0.295 1.295 24 H -0.282 1.282 25 H -0.277 1.277 26 C 0.120 3.880 27 C 0.097 3.903 28 H 0.072 0.928 29 O -0.569 6.569 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.013 0.987 43 H 0.257 0.743 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 8.662 5.922 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.079 5.079 4 O 0.034 5.966 5 C 0.003 3.997 6 C -0.137 4.137 7 C -0.172 4.172 8 C -0.190 4.190 9 C -0.278 4.278 10 C 0.393 3.607 11 O -0.445 6.445 12 N -0.334 5.334 13 C 0.063 3.937 14 H 0.101 0.899 15 C -0.177 4.177 16 C 0.040 3.960 17 N -0.333 5.333 18 C -0.488 4.488 19 H 0.072 0.928 20 C -0.264 4.264 21 N -0.578 5.578 22 Si 0.934 3.066 23 H -0.221 1.221 24 H -0.208 1.208 25 H -0.203 1.203 26 C -0.006 4.006 27 C 0.036 3.964 28 H 0.090 0.910 29 O -0.376 6.376 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.242 0.758 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.067 0.933 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.449 8.938 6.826 12.497 hybrid contribution -1.505 -0.045 -0.620 1.628 sum -6.954 8.894 6.206 12.883 Atomic orbital electron populations 1.20364 0.83053 1.05129 1.04824 1.25180 0.99821 0.85737 0.99651 1.73575 0.89232 1.23531 1.21593 1.84469 1.21511 1.22262 1.68343 1.23814 0.95939 0.83294 0.96701 1.20588 0.84355 0.99639 1.09085 1.23241 0.95240 1.00311 0.98446 1.23158 0.99995 1.04072 0.91808 1.21823 0.93492 0.95042 1.17477 1.16899 0.75946 0.84118 0.83699 1.90769 1.52570 1.68970 1.32173 1.45851 1.68567 1.10918 1.08088 1.20813 0.95243 0.79789 0.97842 0.89870 1.22245 0.96413 1.00041 0.98982 1.20615 0.93875 0.97240 0.84295 1.44170 1.21545 1.53814 1.13723 1.20171 0.92731 1.23338 1.12540 0.92826 1.26994 0.93393 1.05234 1.00790 1.70895 1.37199 1.06347 1.43394 0.82924 0.75029 0.72847 0.75783 1.22084 1.20808 1.20338 1.21648 0.87209 0.94803 0.96905 1.22304 0.84719 0.95139 0.94228 0.90976 1.86443 1.35651 1.67707 1.47777 0.88573 0.88157 0.89528 0.85271 0.86640 0.85477 0.87309 0.88014 0.75842 0.91632 0.90734 0.93495 0.96931 0.93258 0.96030 0.91662 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.49 71.24 0.75 -0.81 16 2 C 0.06 1.61 7.59 45.16 0.34 1.95 16 3 N -0.37 -10.57 12.01 -44.78 -0.54 -11.10 16 4 O 0.09 2.57 10.86 76.90 0.84 3.40 16 5 C 0.07 1.86 7.00 25.48 0.18 2.03 16 6 C -0.12 -2.93 6.14 -11.54 -0.07 -3.00 16 7 C -0.14 -2.51 10.19 30.62 0.31 -2.20 16 8 C -0.15 -3.50 10.24 30.62 0.31 -3.18 16 9 C -0.27 -8.27 6.24 -18.74 -0.12 -8.39 16 10 C 0.61 20.46 7.60 86.66 0.66 21.12 16 11 O -0.57 -22.28 16.77 -4.05 -0.07 -22.35 16 12 N -0.68 -21.81 4.15 -445.71 -1.85 -23.66 16 13 C 0.17 5.50 2.47 45.02 0.11 5.61 16 14 H 0.08 2.82 7.58 -2.39 -0.02 2.80 16 15 C -0.14 -4.97 5.75 30.53 0.18 -4.80 16 16 C 0.17 7.18 4.41 86.22 0.38 7.56 16 17 N -0.61 -27.27 2.85 -699.92 -2.00 -29.26 16 18 C -0.36 -18.41 9.49 84.04 0.80 -17.61 16 19 H 0.05 2.74 7.94 -2.91 -0.02 2.72 16 20 C -0.07 -3.53 4.70 84.86 0.40 -3.13 16 21 N -0.94 -53.20 12.41 21.65 0.27 -52.93 16 22 Si 1.11 48.07 29.99 68.60 2.06 50.13 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 26 C 0.12 4.32 5.85 86.36 0.50 4.83 16 27 C 0.10 2.94 3.36 30.67 0.10 3.04 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 O -0.57 -14.37 13.21 -148.98 -1.97 -16.34 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.12 1.90 8.02 -2.39 -0.02 1.88 16 35 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 37 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.41 12.76 6.85 -92.71 -0.64 12.13 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 40 H 0.07 2.67 8.14 -2.38 -0.02 2.66 16 41 H 0.05 2.37 6.32 -2.39 -0.02 2.35 16 42 H 0.01 0.56 7.46 -2.38 -0.02 0.55 16 43 H 0.26 14.74 6.70 -92.70 -0.62 14.12 16 44 H 0.02 0.79 6.64 -2.39 -0.02 0.77 16 45 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 46 H 0.40 6.60 9.08 -74.06 -0.67 5.92 16 Total: -1.00 -66.36 381.01 1.44 -64.92 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.13 Total: 34.18 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 4.83 Total: 3.02 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -4.12 Total: -116.96 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.20 Total: -35.29 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.06 Total: 50.13 kcal Total: -66.36 1.44 -64.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090438375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.850 kcal (2) G-P(sol) polarization free energy of solvation -66.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds