Wall clock time and date at job start Tue Mar 31 2020 19:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30012 * 127.33549 * 2 1 4 4 O 1.20656 * 112.30093 * 179.97438 * 3 2 1 5 5 C 1.33489 * 113.16020 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.83269 * 180.02562 * 5 4 3 7 7 C 1.52996 * 117.50049 * 300.02537 * 6 5 4 8 8 C 1.53005 * 60.03080 * 107.50029 * 7 6 5 9 9 C 1.37362 * 106.33950 * 0.26094 * 5 4 3 10 10 C 1.47401 * 128.56785 * 179.69428 * 9 5 4 11 11 O 1.21609 * 119.99387 * 90.00375 * 10 9 5 12 12 N 1.34776 * 120.00282 * 270.00705 * 10 9 5 13 13 C 1.46500 * 119.99586 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.46377 * 35.02975 * 13 12 10 15 15 C 1.53041 * 109.46092 * 275.06575 * 13 12 10 16 16 C 1.53191 * 109.31263 * 178.61855 * 15 13 12 17 17 N 1.46930 * 108.77444 * 54.63697 * 16 15 13 18 18 C 1.36933 * 120.62925 * 126.41286 * 17 16 15 19 19 H 1.08002 * 119.99979 * 207.66127 * 18 17 16 20 20 C 1.38819 * 120.00004 * 27.66569 * 18 17 16 21 21 N 1.31614 * 120.00259 * 17.36424 * 20 18 17 22 22 Si 1.86802 * 119.99661 * 197.36618 * 20 18 17 23 23 H 1.48492 * 109.47269 * 59.99946 * 22 20 18 24 24 H 1.48499 * 109.46648 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47106 * 299.99609 * 22 20 18 26 26 C 1.46925 * 118.73644 * 306.39102 * 17 16 15 27 27 C 1.53048 * 109.45615 * 155.00280 * 13 12 10 28 28 H 1.09000 * 109.49783 * 61.39544 * 27 13 12 29 29 O 1.42904 * 109.49503 * 301.33414 * 27 13 12 30 30 H 1.09001 * 109.47292 * 90.01954 * 1 2 3 31 31 H 1.08996 * 109.47379 * 210.02049 * 1 2 3 32 32 H 1.08996 * 109.47412 * 330.02150 * 1 2 3 33 33 H 1.08999 * 115.55918 * 154.33688 * 6 5 4 34 34 H 1.08997 * 117.49781 * 0.02562 * 7 6 5 35 35 H 1.08995 * 117.49919 * 214.99875 * 7 6 5 36 36 H 1.08997 * 117.49822 * 107.47742 * 8 7 6 37 37 H 1.09002 * 117.49816 * 252.47881 * 8 7 6 38 38 H 0.96998 * 119.99896 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.49697 * 298.57311 * 15 13 12 40 40 H 1.09000 * 109.49559 * 58.66446 * 15 13 12 41 41 H 1.08994 * 109.58517 * 294.84942 * 16 15 13 42 42 H 1.09002 * 109.58721 * 174.42019 * 16 15 13 43 43 H 0.96993 * 120.00500 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.58496 * 293.81994 * 26 17 16 45 45 H 1.09010 * 109.69899 * 173.46909 * 26 17 16 46 46 H 0.96697 * 113.99890 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 4.9712 -1.3246 0.0028 7 6 5.9178 -1.0691 -1.1717 8 6 6.2359 -0.4869 0.2071 9 6 2.3991 -1.1696 -0.0044 10 6 2.0400 -2.5992 -0.0122 11 8 1.8892 -3.1938 1.0378 12 7 1.8789 -3.2472 -1.1829 13 6 1.5225 -4.6682 -1.1904 14 1 0.8600 -4.8809 -0.3515 15 6 2.7923 -5.5130 -1.0639 16 6 2.4130 -6.9970 -1.0375 17 7 1.6030 -7.2993 -2.2254 18 6 1.9545 -8.3196 -3.0683 19 1 1.6765 -8.2786 -4.1112 20 6 2.6681 -9.4067 -2.5825 21 7 2.7149 -9.6376 -1.2876 22 14 3.5618 -10.5419 -3.7666 23 1 4.5692 -9.7647 -4.5322 24 1 4.2434 -11.6171 -3.0020 25 1 2.5837 -11.1460 -4.7065 26 6 0.4084 -6.4863 -2.4914 27 6 0.8102 -5.0082 -2.5017 28 1 1.4808 -4.8186 -3.3398 29 8 -0.3589 -4.1970 -2.6335 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 4.9576 -2.3276 0.4293 34 1 5.5847 -0.3771 -1.9451 35 1 6.5268 -1.9040 -1.5180 36 1 7.0539 -0.9391 0.7678 37 1 6.1123 0.5879 0.3402 38 1 1.9989 -2.7728 -2.0204 39 1 3.4445 -5.3193 -1.9156 40 1 3.3114 -5.2536 -0.1412 41 1 1.8361 -7.2106 -0.1377 42 1 3.3173 -7.6055 -1.0473 43 1 3.2138 -10.3969 -0.9480 44 1 -0.3321 -6.6584 -1.7102 45 1 -0.0124 -6.7574 -3.4598 46 1 -0.8608 -4.3592 -3.4440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090438383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:50 Heat of formation + Delta-G solvation = 21.935443 kcal Electronic energy + Delta-G solvation = -29756.217529 eV Core-core repulsion = 25650.714987 eV Total energy + Delta-G solvation = -4105.502542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.01620 -39.76060 -38.00555 -37.63467 -35.45804 -34.68134 -34.35408 -32.19612 -31.67115 -30.02053 -28.95760 -28.58017 -25.73054 -24.37958 -23.74882 -22.75000 -22.43674 -21.86910 -20.54773 -19.78680 -19.46798 -17.99315 -17.87495 -17.13374 -16.70922 -16.52343 -16.05780 -15.96882 -14.95257 -14.67143 -14.40757 -14.04155 -13.93037 -13.61985 -13.52713 -13.47865 -13.27901 -13.09768 -12.81504 -12.37804 -12.28711 -12.09560 -11.92488 -11.64824 -11.62120 -11.41384 -11.15895 -10.89797 -10.78120 -10.75836 -10.39786 -10.32709 -10.19315 -9.99964 -9.94555 -9.79095 -9.53637 -9.33002 -8.84409 -8.50332 -6.82162 -5.88918 -3.33106 1.09539 1.76820 2.48429 2.63287 3.27906 3.32744 3.38829 3.39247 3.49021 3.89621 4.02699 4.31979 4.38834 4.46450 4.54387 4.56693 4.84354 5.06783 5.19996 5.24845 5.28175 5.29385 5.30788 5.40070 5.42922 5.45169 5.49326 5.57105 5.68383 5.71652 5.74221 5.87912 5.91016 6.04397 6.22929 6.42559 6.45188 6.59972 6.71954 6.76878 7.23314 7.54943 7.61731 7.68689 7.86441 8.05918 8.28393 8.33326 9.08887 9.71250 10.26912 11.19647 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.003180 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.608259 B = 8802.319933 C = 9958.423326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.358 5.358 4 O 0.094 5.906 5 C 0.048 3.952 6 C -0.094 4.094 7 C -0.156 4.156 8 C -0.162 4.162 9 C -0.238 4.238 10 C 0.597 3.403 11 O -0.527 6.527 12 N -0.701 5.701 13 C 0.162 3.838 14 H 0.090 0.910 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.587 5.587 18 C -0.262 4.262 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.121 3.879 27 C 0.081 3.919 28 H 0.057 0.943 29 O -0.571 6.571 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.094 0.906 43 H 0.257 0.743 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 18.757 -0.960 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.065 5.065 4 O 0.033 5.967 5 C -0.015 4.015 6 C -0.113 4.113 7 C -0.193 4.193 8 C -0.199 4.199 9 C -0.246 4.246 10 C 0.381 3.619 11 O -0.403 6.403 12 N -0.350 5.350 13 C 0.059 3.941 14 H 0.108 0.892 15 C -0.187 4.187 16 C 0.045 3.955 17 N -0.311 5.311 18 C -0.391 4.391 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.208 1.208 26 C -0.007 4.007 27 C 0.020 3.980 28 H 0.075 0.925 29 O -0.375 6.375 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.263 19.698 0.466 19.833 hybrid contribution 0.168 -1.424 -1.444 2.035 sum 2.431 18.274 -0.979 18.461 Atomic orbital electron populations 1.20233 0.85015 1.04306 1.03943 1.24756 0.98625 0.86468 1.00667 1.73608 0.89036 1.23259 1.20614 1.84480 1.21565 1.22414 1.68270 1.23513 0.95550 0.83392 0.99081 1.20561 0.83965 0.99712 1.07112 1.23139 1.00653 1.03904 0.91591 1.23102 0.96890 1.00188 0.99689 1.21941 0.92377 0.95654 1.14602 1.16813 0.77183 0.83563 0.84361 1.90841 1.50314 1.67534 1.31585 1.46053 1.69498 1.11782 1.07654 1.21091 0.96827 0.78213 0.98000 0.89236 1.22615 0.95716 0.99192 1.01154 1.20837 0.97205 0.89074 0.88381 1.44032 1.23818 1.35301 1.27991 1.19119 1.33064 0.96798 0.90144 0.91557 1.25062 1.01785 0.96631 0.95797 1.70018 1.43157 1.29506 1.11515 0.86349 0.79900 0.80133 0.80244 1.20940 1.21530 1.20813 1.21521 0.90800 0.88634 0.99717 1.22772 0.86145 0.92867 0.96257 0.92544 1.86475 1.40472 1.64100 1.46499 0.89491 0.89530 0.90037 0.84094 0.88033 0.87042 0.87304 0.87691 0.76836 0.92213 0.91927 0.95754 0.88787 0.93336 0.95278 0.92115 0.77929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.49 36.00 0.38 -0.42 16 2 C 0.06 0.74 7.59 -79.77 -0.61 0.14 16 3 N -0.36 -4.78 12.01 34.78 0.42 -4.36 16 4 O 0.09 1.17 10.86 18.66 0.20 1.37 16 5 C 0.05 0.58 7.00 -34.63 -0.24 0.34 16 6 C -0.09 -0.93 6.15 -91.74 -0.56 -1.49 16 7 C -0.16 -1.18 10.23 -26.73 -0.27 -1.46 16 8 C -0.16 -1.19 10.19 -26.69 -0.27 -1.46 16 9 C -0.24 -3.30 6.24 -102.89 -0.64 -3.95 16 10 C 0.60 9.53 7.60 -12.53 -0.10 9.43 16 11 O -0.53 -10.42 16.77 5.27 0.09 -10.33 16 12 N -0.70 -10.33 4.91 -54.85 -0.27 -10.60 16 13 C 0.16 2.80 2.12 -67.88 -0.14 2.66 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 C -0.15 -2.74 5.65 -26.61 -0.15 -2.89 16 16 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 17 N -0.59 -13.93 2.99 -172.32 -0.52 -14.45 16 18 C -0.26 -6.83 9.59 -15.06 -0.14 -6.97 16 19 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 20 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 21 N -0.90 -25.26 11.19 55.49 0.62 -24.64 16 22 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.12 2.37 6.14 -3.72 -0.02 2.35 16 27 C 0.08 1.31 3.14 -26.61 -0.08 1.22 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -8.07 13.16 -35.23 -0.46 -8.54 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 38 H 0.40 5.04 8.59 -40.82 -0.35 4.69 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.12 7.94 -51.92 -0.41 0.71 16 46 H 0.37 3.74 9.08 45.56 0.41 4.16 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -31.96 386.30 -8.19 -40.15 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.09 Total: 8.26 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.97 Total: 1.53 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.25 Total: -54.04 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.17 Total: -17.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.96 -8.19 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090438383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds