Wall clock time and date at job start Tue Mar 31 2020 19:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30012 * 127.33549 * 2 1 4 4 O 1.20656 * 112.30093 * 179.97438 * 3 2 1 5 5 C 1.33489 * 113.16020 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.83269 * 180.02562 * 5 4 3 7 7 C 1.52996 * 117.50049 * 300.02537 * 6 5 4 8 8 C 1.53005 * 60.03080 * 107.50029 * 7 6 5 9 9 C 1.37362 * 106.33950 * 0.26094 * 5 4 3 10 10 C 1.47401 * 128.56785 * 179.69428 * 9 5 4 11 11 O 1.21609 * 119.99387 * 90.00375 * 10 9 5 12 12 N 1.34776 * 120.00282 * 270.00705 * 10 9 5 13 13 C 1.46500 * 119.99586 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.46377 * 35.02975 * 13 12 10 15 15 C 1.53041 * 109.46092 * 275.06575 * 13 12 10 16 16 C 1.53191 * 109.31263 * 178.61855 * 15 13 12 17 17 N 1.46930 * 108.77444 * 54.63697 * 16 15 13 18 18 C 1.36933 * 120.62925 * 126.41286 * 17 16 15 19 19 H 1.08002 * 119.99979 * 207.66127 * 18 17 16 20 20 C 1.38819 * 120.00004 * 27.66569 * 18 17 16 21 21 N 1.31614 * 120.00259 * 17.36424 * 20 18 17 22 22 Si 1.86802 * 119.99661 * 197.36618 * 20 18 17 23 23 H 1.48492 * 109.47269 * 59.99946 * 22 20 18 24 24 H 1.48499 * 109.46648 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47106 * 299.99609 * 22 20 18 26 26 C 1.46925 * 118.73644 * 306.39102 * 17 16 15 27 27 C 1.53048 * 109.45615 * 155.00280 * 13 12 10 28 28 H 1.09000 * 109.49783 * 61.39544 * 27 13 12 29 29 O 1.42904 * 109.49503 * 301.33414 * 27 13 12 30 30 H 1.09001 * 109.47292 * 90.01954 * 1 2 3 31 31 H 1.08996 * 109.47379 * 210.02049 * 1 2 3 32 32 H 1.08996 * 109.47412 * 330.02150 * 1 2 3 33 33 H 1.08999 * 115.55918 * 154.33688 * 6 5 4 34 34 H 1.08997 * 117.49781 * 0.02562 * 7 6 5 35 35 H 1.08995 * 117.49919 * 214.99875 * 7 6 5 36 36 H 1.08997 * 117.49822 * 107.47742 * 8 7 6 37 37 H 1.09002 * 117.49816 * 252.47881 * 8 7 6 38 38 H 0.96998 * 119.99896 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.49697 * 298.57311 * 15 13 12 40 40 H 1.09000 * 109.49559 * 58.66446 * 15 13 12 41 41 H 1.08994 * 109.58517 * 294.84942 * 16 15 13 42 42 H 1.09002 * 109.58721 * 174.42019 * 16 15 13 43 43 H 0.96993 * 120.00500 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.58496 * 293.81994 * 26 17 16 45 45 H 1.09010 * 109.69899 * 173.46909 * 26 17 16 46 46 H 0.96697 * 113.99890 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6007 0.0015 6 6 4.9712 -1.3246 0.0028 7 6 5.9178 -1.0691 -1.1717 8 6 6.2359 -0.4869 0.2071 9 6 2.3991 -1.1696 -0.0044 10 6 2.0400 -2.5992 -0.0122 11 8 1.8892 -3.1938 1.0378 12 7 1.8789 -3.2472 -1.1829 13 6 1.5225 -4.6682 -1.1904 14 1 0.8600 -4.8809 -0.3515 15 6 2.7923 -5.5130 -1.0639 16 6 2.4130 -6.9970 -1.0375 17 7 1.6030 -7.2993 -2.2254 18 6 1.9545 -8.3196 -3.0683 19 1 1.6765 -8.2786 -4.1112 20 6 2.6681 -9.4067 -2.5825 21 7 2.7149 -9.6376 -1.2876 22 14 3.5618 -10.5419 -3.7666 23 1 4.5692 -9.7647 -4.5322 24 1 4.2434 -11.6171 -3.0020 25 1 2.5837 -11.1460 -4.7065 26 6 0.4084 -6.4863 -2.4914 27 6 0.8102 -5.0082 -2.5017 28 1 1.4808 -4.8186 -3.3398 29 8 -0.3589 -4.1970 -2.6335 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 4.9576 -2.3276 0.4293 34 1 5.5847 -0.3771 -1.9451 35 1 6.5268 -1.9040 -1.5180 36 1 7.0539 -0.9391 0.7678 37 1 6.1123 0.5879 0.3402 38 1 1.9989 -2.7728 -2.0204 39 1 3.4445 -5.3193 -1.9156 40 1 3.3114 -5.2536 -0.1412 41 1 1.8361 -7.2106 -0.1377 42 1 3.3173 -7.6055 -1.0473 43 1 3.2138 -10.3969 -0.9480 44 1 -0.3321 -6.6584 -1.7102 45 1 -0.0124 -6.7574 -3.4598 46 1 -0.8608 -4.3592 -3.4440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090438383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:49 Heat of formation + Delta-G solvation = -0.515809 kcal Electronic energy + Delta-G solvation = -29757.191088 eV Core-core repulsion = 25650.714987 eV Total energy + Delta-G solvation = -4106.476101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.00126 -41.12898 -39.43213 -38.35716 -36.97026 -35.81678 -35.66781 -33.81932 -32.86658 -31.64681 -30.21129 -29.79014 -27.34674 -25.72912 -24.61884 -23.99019 -23.49267 -23.30126 -21.78121 -21.24964 -20.54245 -19.23917 -18.86805 -18.67059 -18.02027 -17.59862 -17.43127 -16.98130 -16.71200 -15.84175 -15.71772 -15.66380 -15.25453 -14.95346 -14.83742 -14.45507 -14.36675 -14.32491 -13.98735 -13.87144 -13.61282 -13.26990 -13.08980 -12.98179 -12.67345 -12.55225 -12.43932 -12.42040 -12.21404 -12.13816 -12.06857 -11.88346 -11.55865 -11.45370 -11.21229 -11.04287 -10.99682 -10.56046 -10.25980 -10.14827 -8.76000 -7.89229 -5.36412 0.13822 0.76833 1.25578 1.50259 1.52360 1.59215 1.61993 2.12490 2.50606 2.78921 3.00402 3.10168 3.12329 3.28128 3.58070 3.62820 3.67188 3.82222 3.90597 3.96398 4.04149 4.14427 4.21937 4.38779 4.41053 4.48571 4.52921 4.55347 4.65217 4.67238 4.75004 4.84139 4.91320 4.92162 5.01670 5.03558 5.05565 5.12598 5.20030 5.34960 5.39321 5.61437 5.67111 6.34663 6.38735 6.88434 7.04962 7.08674 7.10828 7.79155 8.31543 9.17917 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.003180 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.608259 B = 8802.319933 C = 9958.423326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.370 5.370 4 O 0.095 5.905 5 C 0.067 3.933 6 C -0.123 4.123 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.268 4.268 10 C 0.606 3.394 11 O -0.571 6.571 12 N -0.685 5.685 13 C 0.170 3.830 14 H 0.059 0.941 15 C -0.128 4.128 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.268 4.268 19 H 0.077 0.923 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.118 3.882 27 C 0.103 3.897 28 H 0.075 0.925 29 O -0.570 6.570 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.059 0.941 41 H -0.009 1.009 42 H 0.065 0.935 43 H 0.251 0.749 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 20.699 -3.194 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.079 5.079 4 O 0.036 5.964 5 C 0.004 3.996 6 C -0.142 4.142 7 C -0.178 4.178 8 C -0.184 4.184 9 C -0.275 4.275 10 C 0.391 3.609 11 O -0.450 6.450 12 N -0.334 5.334 13 C 0.065 3.935 14 H 0.077 0.923 15 C -0.168 4.168 16 C 0.053 3.947 17 N -0.327 5.327 18 C -0.397 4.397 19 H 0.094 0.906 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.200 1.200 26 C -0.009 4.009 27 C 0.042 3.958 28 H 0.093 0.907 29 O -0.378 6.378 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.249 0.751 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.094 0.906 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.888 21.693 -1.833 21.961 hybrid contribution -0.090 -1.993 -0.731 2.125 sum 2.798 19.700 -2.564 20.063 Atomic orbital electron populations 1.20340 0.83451 1.04556 1.05125 1.25131 0.99687 0.85930 0.99826 1.73596 0.89290 1.23429 1.21581 1.84470 1.21368 1.22371 1.68213 1.23871 0.95969 0.83181 0.96609 1.20652 0.83970 0.99629 1.09972 1.23254 0.98983 1.04196 0.91414 1.23240 0.95357 1.00202 0.99566 1.21731 0.93592 0.94576 1.17624 1.17001 0.75971 0.84242 0.83720 1.90821 1.52276 1.68774 1.33171 1.45783 1.68800 1.10602 1.08205 1.20757 0.95570 0.79391 0.97770 0.92296 1.22327 0.96628 0.96297 1.01588 1.20556 0.95409 0.91438 0.87255 1.44242 1.25334 1.35562 1.27598 1.19533 1.32307 0.96990 0.90905 0.90558 1.25848 1.02977 0.98420 0.97123 1.70190 1.44366 1.30129 1.13415 0.85316 0.78774 0.78015 0.78174 1.19958 1.22467 1.20030 1.21686 0.89109 0.90328 0.99787 1.22299 0.87075 0.90540 0.95870 0.90746 1.86450 1.39939 1.63053 1.48315 0.87756 0.90499 0.88517 0.85181 0.87432 0.85851 0.85739 0.87168 0.75079 0.90825 0.92208 0.99079 0.91712 0.94017 0.97013 0.90566 0.75334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.49 71.24 0.75 -0.74 16 2 C 0.06 1.40 7.59 45.16 0.34 1.75 16 3 N -0.37 -9.37 12.01 -44.79 -0.54 -9.91 16 4 O 0.09 2.23 10.86 77.02 0.84 3.06 16 5 C 0.07 1.56 7.00 25.48 0.18 1.74 16 6 C -0.12 -2.25 6.15 -11.52 -0.07 -2.32 16 7 C -0.14 -1.78 10.23 30.59 0.31 -1.47 16 8 C -0.15 -1.81 10.19 30.62 0.31 -1.49 16 9 C -0.27 -7.23 6.24 -18.74 -0.12 -7.35 16 10 C 0.61 19.23 7.60 86.66 0.66 19.89 16 11 O -0.57 -23.22 16.77 -4.06 -0.07 -23.29 16 12 N -0.68 -19.41 4.91 -445.69 -2.19 -21.60 16 13 C 0.17 5.80 2.12 45.02 0.10 5.90 16 14 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 15 C -0.13 -4.83 5.65 30.67 0.17 -4.66 16 16 C 0.18 8.62 5.31 86.36 0.46 9.08 16 17 N -0.60 -28.78 2.99 -699.09 -2.09 -30.88 16 18 C -0.27 -13.88 9.59 84.04 0.81 -13.07 16 19 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16 20 C -0.05 -2.57 4.91 84.86 0.42 -2.16 16 21 N -0.94 -54.32 11.19 21.65 0.24 -54.07 16 22 Si 0.97 42.87 29.59 68.60 2.03 44.90 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.12 4.52 6.14 86.36 0.53 5.05 16 27 C 0.10 3.15 3.14 30.67 0.10 3.25 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 O -0.57 -14.54 13.16 -148.98 -1.96 -16.50 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.27 8.02 -2.39 -0.02 1.25 16 38 H 0.41 9.47 8.59 -92.71 -0.80 8.67 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.06 3.48 6.04 -2.39 -0.01 3.46 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.08 2.66 7.94 -2.38 -0.02 2.64 16 46 H 0.40 6.49 9.08 -74.06 -0.67 5.81 16 Total: -1.00 -71.00 386.30 0.75 -70.25 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.45 Total: 24.65 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.94 Total: 13.39 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -4.58 Total: -116.46 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.19 Total: -36.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.00 0.75 -70.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090438383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.736 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds