Wall clock time and date at job start Tue Mar 31 2020 19:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41377 * 126.80616 * 2 1 4 4 C 1.35456 * 103.99041 * 180.09454 * 3 2 1 5 5 C 1.50693 * 126.78207 * 179.90942 * 4 3 2 6 6 C 1.50705 * 115.54576 * 329.32136 * 5 4 3 7 7 O 1.21278 * 120.00194 * 123.73645 * 6 5 4 8 8 N 1.34774 * 120.00084 * 303.72826 * 6 5 4 9 9 C 1.46499 * 120.00139 * 174.71228 * 8 6 5 10 10 H 1.08996 * 109.45852 * 34.97837 * 9 8 6 11 11 C 1.53041 * 109.46201 * 275.00287 * 9 8 6 12 12 C 1.53191 * 109.31622 * 301.34727 * 11 9 8 13 13 N 1.46928 * 108.88877 * 305.29212 * 12 11 9 14 14 C 1.36936 * 120.62903 * 233.66959 * 13 12 11 15 15 H 1.07997 * 119.99890 * 31.27217 * 14 13 12 16 16 C 1.38809 * 120.00115 * 211.26481 * 14 13 12 17 17 N 1.31619 * 120.00114 * 10.55124 * 16 14 13 18 18 Si 1.86802 * 120.00296 * 190.54343 * 16 14 13 19 19 H 1.48502 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47263 * 119.99948 * 18 16 14 21 21 H 1.48497 * 109.47407 * 240.00989 * 18 16 14 22 22 C 1.47204 * 118.55761 * 53.54197 * 13 12 11 23 23 C 1.53039 * 109.45998 * 154.93800 * 9 8 6 24 24 H 1.08997 * 109.50190 * 178.60722 * 23 9 8 25 25 O 1.42900 * 109.49593 * 298.67205 * 23 9 8 26 26 C 1.52997 * 117.50129 * 114.98810 * 5 4 3 27 27 C 1.52992 * 117.50185 * 183.64889 * 5 4 3 28 28 O 1.34040 * 106.44277 * 359.64279 * 4 3 2 29 29 N 1.20928 * 111.56806 * 0.23903 * 28 4 3 30 30 H 1.08993 * 109.47294 * 270.29804 * 1 2 3 31 31 H 1.09006 * 109.46913 * 30.29364 * 1 2 3 32 32 H 1.08999 * 109.47652 * 150.29193 * 1 2 3 33 33 H 1.08001 * 128.00746 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00013 * 354.72225 * 8 6 5 35 35 H 1.08999 * 109.49975 * 181.38908 * 11 9 8 36 36 H 1.08999 * 109.51934 * 61.30938 * 11 9 8 37 37 H 1.09003 * 109.58879 * 65.14612 * 12 11 9 38 38 H 1.08997 * 109.58688 * 185.43367 * 12 11 9 39 39 H 0.97004 * 119.99974 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.53488 * 186.67382 * 22 13 12 41 41 H 1.09000 * 109.68123 * 66.36326 * 22 13 12 42 42 H 0.96705 * 114.00346 * 179.97438 * 25 23 9 43 43 H 1.09001 * 117.50083 * 215.00577 * 26 5 4 44 44 H 1.08996 * 117.49731 * 0.02562 * 26 5 4 45 45 H 1.09001 * 117.49777 * 359.97438 * 27 5 4 46 46 H 1.09000 * 117.49837 * 144.96969 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3693 -0.0050 6 6 4.8696 2.7065 -0.6994 7 8 5.1961 3.7091 -0.1001 8 7 4.4778 2.7882 -1.9863 9 6 4.3347 4.0980 -2.6267 10 1 5.0972 4.7754 -2.2423 11 6 2.9469 4.6661 -2.3211 12 6 1.8780 3.6951 -2.8322 13 7 2.1182 3.4306 -4.2574 14 6 1.1218 3.6141 -5.1786 15 1 0.3743 4.3775 -5.0207 16 6 1.0725 2.8192 -6.3155 17 7 1.8485 1.7605 -6.4123 18 14 -0.0951 3.2518 -7.7079 19 1 -0.8521 4.4799 -7.3556 20 1 0.6827 3.4896 -8.9504 21 1 -1.0440 2.1303 -7.9248 22 6 3.4525 2.9675 -4.6721 23 6 4.5037 3.9467 -4.1402 24 1 4.3729 4.9167 -4.6197 25 8 5.8111 3.4457 -4.4264 26 6 5.8041 1.2330 1.2233 27 6 6.1968 0.5587 -0.0935 28 8 3.4538 -0.7254 0.0047 29 7 2.2868 -1.0424 0.0059 30 1 -0.3633 0.0053 1.0276 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3634 -0.8925 -0.5093 33 1 2.0710 2.1743 -0.0004 34 1 4.2904 1.9797 -2.4885 35 1 2.8307 5.6295 -2.8176 36 1 2.8355 4.7959 -1.2446 37 1 1.9349 2.7614 -2.2727 38 1 0.8905 4.1383 -2.7042 39 1 1.8138 1.2047 -7.2066 40 1 3.5040 2.9317 -5.7603 41 1 3.6393 1.9740 -4.2646 42 1 5.9882 3.3245 -5.3693 43 1 6.3738 2.1104 1.5293 44 1 5.4575 0.5913 2.0334 45 1 6.1084 -0.5262 -0.1492 46 1 7.0247 0.9924 -0.6543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090516481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:54 Heat of formation + Delta-G solvation = 26.798298 kcal Electronic energy + Delta-G solvation = -30922.764776 eV Core-core repulsion = 26817.473104 eV Total energy + Delta-G solvation = -4105.291673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.86992 -40.24347 -38.36993 -36.55442 -35.32794 -34.71531 -34.14752 -32.03118 -31.42559 -29.73272 -28.93936 -28.61291 -25.69471 -24.66759 -23.24832 -22.66224 -22.34516 -21.84602 -21.19167 -19.46684 -18.76880 -18.02833 -17.50216 -17.03591 -16.64181 -16.53163 -15.55984 -15.25594 -15.01788 -14.67729 -14.39028 -14.06247 -13.73532 -13.58060 -13.37763 -13.31815 -13.25527 -12.96579 -12.81466 -12.43836 -12.30380 -11.87376 -11.77452 -11.72529 -11.41587 -11.18609 -11.07904 -11.05073 -10.91841 -10.88325 -10.47708 -10.24531 -10.08149 -9.90153 -9.80811 -9.64313 -9.37781 -9.13021 -8.75070 -8.61133 -6.77702 -5.92964 -3.42099 1.42853 2.28729 2.39945 3.08228 3.27422 3.33418 3.36299 3.37584 3.66755 4.17643 4.26227 4.34618 4.51705 4.63476 4.65903 4.83097 5.08174 5.23137 5.28021 5.34478 5.37657 5.43984 5.50363 5.51697 5.54306 5.64158 5.69556 5.76525 5.81805 5.85324 5.87516 5.92466 5.97958 6.17077 6.20006 6.34087 6.36638 6.63699 6.74667 6.86641 7.01542 7.39590 7.65916 7.75595 8.05260 8.31345 8.31819 8.37280 9.05434 9.66543 10.24129 11.14846 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.004655 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.691851 B = 6013.812519 C = 7401.044018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 C -0.208 4.208 4 C 0.006 3.994 5 C -0.092 4.092 6 C 0.561 3.439 7 O -0.539 6.539 8 N -0.692 5.692 9 C 0.164 3.836 10 H 0.081 0.919 11 C -0.146 4.146 12 C 0.144 3.856 13 N -0.586 5.586 14 C -0.255 4.255 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.146 3.854 23 C 0.066 3.934 24 H 0.062 0.938 25 O -0.573 6.573 26 C -0.126 4.126 27 C -0.143 4.143 28 O 0.100 5.900 29 N -0.365 5.365 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.407 0.593 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.255 0.745 40 H 0.093 0.907 41 H 0.024 0.976 42 H 0.376 0.624 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -1.114 11.542 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.133 4.133 3 C -0.229 4.229 4 C -0.058 4.058 5 C -0.097 4.097 6 C 0.344 3.656 7 O -0.417 6.417 8 N -0.343 5.343 9 C 0.060 3.940 10 H 0.099 0.901 11 C -0.186 4.186 12 C 0.018 3.982 13 N -0.310 5.310 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.020 3.980 23 C 0.006 3.994 24 H 0.080 0.920 25 O -0.377 6.377 26 C -0.164 4.164 27 C -0.181 4.181 28 O 0.034 5.966 29 N -0.070 5.070 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.188 0.812 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.042 0.958 42 H 0.223 0.777 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.355 -1.801 12.454 13.675 hybrid contribution -0.976 0.562 -1.809 2.131 sum 4.379 -1.240 10.645 11.577 Atomic orbital electron populations 1.20184 0.85818 1.04364 1.03019 1.23542 0.99104 0.88520 1.02107 1.22343 0.90782 1.01286 1.08479 1.22788 0.95422 0.83706 1.03875 1.19445 0.87845 0.95274 1.07098 1.18796 0.77100 0.87615 0.82060 1.90684 1.48931 1.36163 1.65882 1.45913 1.66729 1.10406 1.11209 1.20872 0.97620 0.84190 0.91363 0.90094 1.22427 0.95124 1.00526 1.00520 1.20954 0.95689 0.95266 0.86335 1.43942 1.07673 1.78591 1.00803 1.19215 1.06325 1.12580 1.00331 0.91522 1.25172 0.98712 0.95113 1.00246 1.69959 1.41226 1.15142 1.28447 0.86191 0.80472 0.77842 0.82077 1.20165 1.21522 1.21566 1.21444 0.82654 0.92517 1.01410 1.22937 0.83663 0.98869 0.93965 0.91992 1.86405 1.32853 1.88613 1.29870 1.23157 0.99108 1.03349 0.90750 1.23205 0.94500 0.99943 1.00430 1.84774 1.21858 1.22006 1.67944 1.73829 0.89082 1.23836 1.20292 0.90365 0.89546 0.90480 0.81241 0.75671 0.90966 0.91882 0.96032 0.92564 0.93510 0.88849 0.95845 0.77669 0.86454 0.87507 0.86836 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.47 36.00 0.38 -0.51 16 2 C 0.03 0.38 7.33 -82.10 -0.60 -0.22 16 3 C -0.21 -3.01 10.30 -39.38 -0.41 -3.42 16 4 C 0.01 0.08 6.74 -35.30 -0.24 -0.16 16 5 C -0.09 -1.21 2.44 -156.82 -0.38 -1.59 16 6 C 0.56 8.81 6.74 -10.98 -0.07 8.74 16 7 O -0.54 -9.75 16.12 5.56 0.09 -9.66 16 8 N -0.69 -11.29 4.12 -53.77 -0.22 -11.52 16 9 C 0.16 2.81 2.51 -67.89 -0.17 2.64 16 10 H 0.08 1.44 7.51 -51.93 -0.39 1.05 16 11 C -0.15 -2.46 5.77 -26.61 -0.15 -2.62 16 12 C 0.14 2.78 6.25 -3.71 -0.02 2.76 16 13 N -0.59 -13.38 3.00 -172.09 -0.52 -13.89 16 14 C -0.25 -6.52 9.59 -15.06 -0.14 -6.66 16 15 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 17 N -0.90 -24.63 11.06 55.49 0.61 -24.01 16 18 Si 0.90 20.66 29.57 -169.99 -5.03 15.64 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.15 3.14 4.60 -3.56 -0.02 3.12 16 23 C 0.07 1.19 3.36 -26.61 -0.09 1.10 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 O -0.57 -9.43 13.21 -35.23 -0.47 -9.90 16 26 C -0.13 -1.33 9.75 -26.70 -0.26 -1.59 16 27 C -0.14 -1.50 9.89 -26.70 -0.26 -1.77 16 28 O 0.10 1.50 10.96 17.18 0.19 1.69 16 29 N -0.37 -5.80 12.07 33.42 0.40 -5.40 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.17 2.36 7.89 -52.49 -0.41 1.95 16 34 H 0.41 7.00 6.87 -40.82 -0.28 6.72 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.43 7.26 -51.93 -0.38 0.05 16 38 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.09 2.26 6.12 -51.93 -0.32 1.94 16 41 H 0.02 0.54 6.64 -51.93 -0.35 0.20 16 42 H 0.38 4.97 9.08 45.56 0.41 5.38 16 43 H 0.12 1.24 7.84 -51.93 -0.41 0.84 16 44 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.11 1.06 8.00 -51.93 -0.42 0.64 16 46 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -30.36 378.65 -7.64 -37.99 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.87 Total: 13.45 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.53 Total: -0.09 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.83 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.19 Total: -17.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.36 -7.64 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090516481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.790 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds