Wall clock time and date at job start Tue Mar 31 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41377 * 126.80616 * 2 1 4 4 C 1.35456 * 103.99041 * 180.09454 * 3 2 1 5 5 C 1.50693 * 126.78207 * 179.90942 * 4 3 2 6 6 C 1.50705 * 115.54576 * 329.32136 * 5 4 3 7 7 O 1.21278 * 120.00194 * 123.73645 * 6 5 4 8 8 N 1.34774 * 120.00084 * 303.72826 * 6 5 4 9 9 C 1.46499 * 120.00139 * 174.71228 * 8 6 5 10 10 H 1.08996 * 109.45852 * 34.97837 * 9 8 6 11 11 C 1.53041 * 109.46201 * 275.00287 * 9 8 6 12 12 C 1.53191 * 109.31622 * 301.34727 * 11 9 8 13 13 N 1.46928 * 108.88877 * 305.29212 * 12 11 9 14 14 C 1.36936 * 120.62903 * 233.66959 * 13 12 11 15 15 H 1.07997 * 119.99890 * 31.27217 * 14 13 12 16 16 C 1.38809 * 120.00115 * 211.26481 * 14 13 12 17 17 N 1.31619 * 120.00114 * 10.55124 * 16 14 13 18 18 Si 1.86802 * 120.00296 * 190.54343 * 16 14 13 19 19 H 1.48502 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47263 * 119.99948 * 18 16 14 21 21 H 1.48497 * 109.47407 * 240.00989 * 18 16 14 22 22 C 1.47204 * 118.55761 * 53.54197 * 13 12 11 23 23 C 1.53039 * 109.45998 * 154.93800 * 9 8 6 24 24 H 1.08997 * 109.50190 * 178.60722 * 23 9 8 25 25 O 1.42900 * 109.49593 * 298.67205 * 23 9 8 26 26 C 1.52997 * 117.50129 * 114.98810 * 5 4 3 27 27 C 1.52992 * 117.50185 * 183.64889 * 5 4 3 28 28 O 1.34040 * 106.44277 * 359.64279 * 4 3 2 29 29 N 1.20928 * 111.56806 * 0.23903 * 28 4 3 30 30 H 1.08993 * 109.47294 * 270.29804 * 1 2 3 31 31 H 1.09006 * 109.46913 * 30.29364 * 1 2 3 32 32 H 1.08999 * 109.47652 * 150.29193 * 1 2 3 33 33 H 1.08001 * 128.00746 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00013 * 354.72225 * 8 6 5 35 35 H 1.08999 * 109.49975 * 181.38908 * 11 9 8 36 36 H 1.08999 * 109.51934 * 61.30938 * 11 9 8 37 37 H 1.09003 * 109.58879 * 65.14612 * 12 11 9 38 38 H 1.08997 * 109.58688 * 185.43367 * 12 11 9 39 39 H 0.97004 * 119.99974 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.53488 * 186.67382 * 22 13 12 41 41 H 1.09000 * 109.68123 * 66.36326 * 22 13 12 42 42 H 0.96705 * 114.00346 * 179.97438 * 25 23 9 43 43 H 1.09001 * 117.50083 * 215.00577 * 26 5 4 44 44 H 1.08996 * 117.49731 * 0.02562 * 26 5 4 45 45 H 1.09001 * 117.49777 * 359.97438 * 27 5 4 46 46 H 1.09000 * 117.49837 * 144.96969 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3693 -0.0050 6 6 4.8696 2.7065 -0.6994 7 8 5.1961 3.7091 -0.1001 8 7 4.4778 2.7882 -1.9863 9 6 4.3347 4.0980 -2.6267 10 1 5.0972 4.7754 -2.2423 11 6 2.9469 4.6661 -2.3211 12 6 1.8780 3.6951 -2.8322 13 7 2.1182 3.4306 -4.2574 14 6 1.1218 3.6141 -5.1786 15 1 0.3743 4.3775 -5.0207 16 6 1.0725 2.8192 -6.3155 17 7 1.8485 1.7605 -6.4123 18 14 -0.0951 3.2518 -7.7079 19 1 -0.8521 4.4799 -7.3556 20 1 0.6827 3.4896 -8.9504 21 1 -1.0440 2.1303 -7.9248 22 6 3.4525 2.9675 -4.6721 23 6 4.5037 3.9467 -4.1402 24 1 4.3729 4.9167 -4.6197 25 8 5.8111 3.4457 -4.4264 26 6 5.8041 1.2330 1.2233 27 6 6.1968 0.5587 -0.0935 28 8 3.4538 -0.7254 0.0047 29 7 2.2868 -1.0424 0.0059 30 1 -0.3633 0.0053 1.0276 31 1 -0.3633 0.8874 -0.5184 32 1 -0.3634 -0.8925 -0.5093 33 1 2.0710 2.1743 -0.0004 34 1 4.2904 1.9797 -2.4885 35 1 2.8307 5.6295 -2.8176 36 1 2.8355 4.7959 -1.2446 37 1 1.9349 2.7614 -2.2727 38 1 0.8905 4.1383 -2.7042 39 1 1.8138 1.2047 -7.2066 40 1 3.5040 2.9317 -5.7603 41 1 3.6393 1.9740 -4.2646 42 1 5.9882 3.3245 -5.3693 43 1 6.3738 2.1104 1.5293 44 1 5.4575 0.5913 2.0334 45 1 6.1084 -0.5262 -0.1492 46 1 7.0247 0.9924 -0.6543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090516481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:53 Heat of formation + Delta-G solvation = 6.551731 kcal Electronic energy + Delta-G solvation = -30923.642733 eV Core-core repulsion = 26817.473104 eV Total energy + Delta-G solvation = -4106.169630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.00075 -41.51565 -39.74843 -37.68086 -36.84409 -35.82077 -35.67148 -33.69627 -32.54336 -31.37756 -30.48614 -29.62929 -27.38356 -25.92670 -24.38736 -23.97122 -23.55645 -23.35415 -22.42610 -20.66707 -20.22074 -19.20048 -18.76101 -18.64784 -18.07755 -17.70056 -16.97143 -16.76574 -16.33662 -15.99296 -15.76720 -15.59214 -15.33129 -14.89956 -14.69606 -14.41669 -14.30495 -14.22430 -13.96166 -13.85866 -13.55688 -13.39548 -13.24256 -12.85607 -12.74270 -12.70727 -12.58941 -12.41287 -12.18422 -12.10924 -11.97786 -11.87383 -11.82045 -11.26865 -11.03794 -10.98392 -10.87795 -10.61602 -10.23659 -10.04714 -8.64961 -7.89352 -5.40296 0.32839 1.17728 1.22660 1.45465 1.49233 1.57759 1.90419 2.19741 2.48497 2.68664 3.13055 3.18141 3.20658 3.28829 3.55499 3.66478 3.69111 3.81421 3.93443 4.04683 4.14612 4.22625 4.27361 4.36234 4.45605 4.48317 4.60148 4.65119 4.66365 4.71855 4.80726 4.82683 4.89012 4.91983 4.94381 5.08364 5.12222 5.17117 5.19622 5.32604 5.48943 5.61421 5.65042 6.37111 6.44175 6.81954 7.08852 7.13252 7.19849 7.79788 8.33102 9.15908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.004655 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.691851 B = 6013.812519 C = 7401.044018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.019 3.981 3 C -0.223 4.223 4 C 0.013 3.987 5 C -0.114 4.114 6 C 0.565 3.435 7 O -0.562 6.562 8 N -0.693 5.693 9 C 0.167 3.833 10 H 0.081 0.919 11 C -0.133 4.133 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.260 4.260 15 H 0.067 0.933 16 C -0.041 4.041 17 N -0.932 5.932 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.295 1.295 22 C 0.160 3.840 23 C 0.083 3.917 24 H 0.064 0.936 25 O -0.573 6.573 26 C -0.109 4.109 27 C -0.129 4.129 28 O 0.097 5.903 29 N -0.389 5.389 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.403 0.597 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.004 0.996 42 H 0.391 0.609 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -0.604 12.514 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C -0.244 4.244 4 C -0.051 4.051 5 C -0.119 4.119 6 C 0.350 3.650 7 O -0.441 6.441 8 N -0.342 5.342 9 C 0.062 3.938 10 H 0.099 0.901 11 C -0.173 4.173 12 C 0.021 3.979 13 N -0.325 5.325 14 C -0.391 4.391 15 H 0.085 0.915 16 C -0.237 4.237 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.217 1.217 21 H -0.223 1.223 22 C 0.033 3.967 23 C 0.022 3.978 24 H 0.082 0.918 25 O -0.380 6.380 26 C -0.147 4.147 27 C -0.167 4.167 28 O 0.033 5.967 29 N -0.096 5.096 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.190 0.810 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.022 0.978 42 H 0.240 0.760 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.750 -1.277 13.439 14.673 hybrid contribution -1.063 0.406 -2.085 2.375 sum 4.687 -0.871 11.354 12.315 Atomic orbital electron populations 1.20305 0.84080 1.04410 1.04596 1.24024 1.00402 0.88288 1.01189 1.22461 0.91142 1.01432 1.09382 1.22953 0.95809 0.83505 1.02784 1.19390 0.88539 0.94488 1.09464 1.19100 0.76037 0.88327 0.81524 1.90668 1.49959 1.37291 1.66222 1.45906 1.66911 1.09790 1.11584 1.20799 0.97614 0.84700 0.90691 0.90103 1.22286 0.94024 0.99875 1.01121 1.21000 0.96673 0.95752 0.84499 1.44140 1.07797 1.78631 1.01934 1.19493 1.06594 1.12114 1.00851 0.91499 1.25806 1.00320 0.95261 1.02334 1.70104 1.42774 1.16149 1.28717 0.85271 0.78606 0.77518 0.79427 1.19134 1.21709 1.22267 1.21203 0.83366 0.92620 0.99478 1.22605 0.83106 0.97607 0.94450 0.91820 1.86385 1.31671 1.88450 1.31467 1.23285 0.97236 1.03469 0.90669 1.23357 0.92640 1.00485 1.00172 1.84741 1.21630 1.22254 1.68123 1.73812 0.89529 1.24558 1.21732 0.87994 0.89243 0.90593 0.81032 0.76174 0.90429 0.90661 0.96247 0.92513 0.94100 0.91806 0.97766 0.75973 0.86319 0.85762 0.85476 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.47 71.23 0.75 -0.97 16 2 C 0.02 0.55 7.33 43.57 0.32 0.87 16 3 C -0.22 -6.33 10.30 22.40 0.23 -6.10 16 4 C 0.01 0.36 6.74 25.04 0.17 0.53 16 5 C -0.11 -2.82 2.44 -53.68 -0.13 -2.95 16 6 C 0.56 17.04 6.74 87.66 0.59 17.63 16 7 O -0.56 -19.50 16.12 -3.02 -0.05 -19.55 16 8 N -0.69 -22.00 4.12 -442.41 -1.82 -23.82 16 9 C 0.17 5.51 2.51 45.02 0.11 5.62 16 10 H 0.08 2.75 7.51 -2.39 -0.02 2.73 16 11 C -0.13 -4.31 5.77 30.67 0.18 -4.14 16 12 C 0.15 5.56 6.25 86.36 0.54 6.10 16 13 N -0.60 -27.40 3.00 -698.38 -2.09 -29.49 16 14 C -0.26 -13.29 9.59 84.03 0.81 -12.49 16 15 H 0.07 3.36 7.85 -2.91 -0.02 3.33 16 16 C -0.04 -2.16 5.06 84.86 0.43 -1.73 16 17 N -0.93 -51.65 11.06 21.65 0.24 -51.41 16 18 Si 0.96 42.63 29.57 68.60 2.03 44.66 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 22 C 0.16 6.91 4.60 86.31 0.40 7.31 16 23 C 0.08 2.91 3.36 30.67 0.10 3.02 16 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 25 O -0.57 -18.23 13.21 -148.98 -1.97 -20.20 16 26 C -0.11 -2.03 9.75 30.62 0.30 -1.74 16 27 C -0.13 -2.42 9.89 30.61 0.30 -2.12 16 28 O 0.10 2.82 10.96 71.63 0.79 3.60 16 29 N -0.39 -12.20 12.07 -49.54 -0.60 -12.80 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.17 4.69 7.89 -2.91 -0.02 4.67 16 34 H 0.40 13.73 6.87 -92.71 -0.64 13.09 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.02 0.76 7.26 -2.39 -0.02 0.74 16 38 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 39 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 40 H 0.06 3.15 6.12 -2.39 -0.01 3.14 16 41 H 0.00 0.21 6.64 -2.39 -0.02 0.19 16 42 H 0.39 9.93 9.08 -74.05 -0.67 9.26 16 43 H 0.12 2.23 7.84 -2.39 -0.02 2.21 16 44 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.13 2.05 8.00 -2.39 -0.02 2.03 16 46 H 0.12 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -64.29 378.65 1.33 -62.96 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.28 Total: 37.19 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.09 Total: 8.87 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.27 Total: -117.53 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.23 Total: -36.15 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.29 1.33 -62.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090516481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.515 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds