Wall clock time and date at job start Tue Mar 31 2020 19:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35270 * 126.70958 * 2 1 4 4 C 1.41939 * 103.95918 * 180.11306 * 3 2 1 5 5 O 1.35705 * 126.87703 * 179.91330 * 4 3 2 6 6 C 1.42894 * 116.99911 * 179.71070 * 5 4 3 7 7 C 1.50701 * 109.47232 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00000 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00032 * 179.97438 * 7 6 5 10 10 C 1.47209 * 126.70155 * 359.97438 * 9 7 6 11 11 C 1.53789 * 106.37741 * 211.29487 * 10 9 7 12 12 H 1.08990 * 111.85543 * 103.06979 * 11 10 9 13 13 C 1.53781 * 109.34637 * 227.54572 * 11 10 9 14 14 N 1.49547 * 105.21589 * 94.17987 * 13 11 10 15 15 C 1.36939 * 126.51917 * 211.22709 * 14 13 11 16 16 H 1.08000 * 120.00185 * 162.20401 * 15 14 13 17 17 C 1.38812 * 119.99663 * 342.19659 * 15 14 13 18 18 N 1.31619 * 120.00133 * 159.97364 * 17 15 14 19 19 Si 1.86809 * 120.00111 * 339.97080 * 17 15 14 20 20 H 1.48507 * 109.46387 * 84.71330 * 19 17 15 21 21 H 1.48496 * 109.47062 * 204.71082 * 19 17 15 22 22 H 1.48491 * 109.47205 * 324.71515 * 19 17 15 23 23 C 1.47215 * 106.78013 * 31.41203 * 14 13 11 24 24 C 1.53774 * 106.37790 * 328.53690 * 23 14 13 25 25 C 1.53001 * 112.60248 * 141.02870 * 24 23 14 26 26 C 1.47209 * 126.70109 * 179.97438 * 9 7 6 27 27 N 1.30616 * 106.24047 * 359.64678 * 4 3 2 28 28 O 1.20920 * 111.50127 * 0.22980 * 27 4 3 29 29 H 1.09006 * 109.47239 * 180.25945 * 1 2 3 30 30 H 1.09005 * 109.47127 * 300.25651 * 1 2 3 31 31 H 1.09001 * 109.47554 * 60.25837 * 1 2 3 32 32 H 1.07998 * 128.02410 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47533 * 59.99422 * 6 5 4 34 34 H 1.09000 * 109.47173 * 299.99806 * 6 5 4 35 35 H 1.09001 * 110.07609 * 330.52407 * 10 9 7 36 36 H 1.08996 * 110.07703 * 92.06544 * 10 9 7 37 37 H 1.08995 * 110.07367 * 213.17737 * 13 11 10 38 38 H 1.09000 * 110.07547 * 334.72245 * 13 11 10 39 39 H 0.97001 * 120.00031 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.07644 * 209.30347 * 23 14 13 41 41 H 1.09001 * 110.11507 * 87.79262 * 23 14 13 42 42 H 1.09005 * 109.47609 * 182.60071 * 25 24 23 43 43 H 1.08999 * 109.47399 * 302.60159 * 25 24 23 44 44 H 1.09004 * 109.47341 * 62.60362 * 25 24 23 45 45 H 1.09002 * 110.07856 * 267.94310 * 26 9 7 46 46 H 1.09004 * 110.07204 * 29.48858 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6245 0.5355 -0.0027 5 8 4.7953 1.2217 -0.0054 6 6 5.9987 0.4512 -0.0014 7 6 7.1879 1.3769 -0.0058 8 8 7.0212 2.5782 -0.0123 9 7 8.4367 0.8699 -0.0026 10 6 8.8078 -0.5547 0.0056 11 6 10.1370 -0.6520 0.7730 12 1 9.9942 -1.0284 1.7858 13 6 11.1243 -1.5190 -0.0262 14 7 11.9281 -0.5528 -0.8366 15 6 12.4755 -0.7819 -2.0707 16 1 12.7841 0.0492 -2.6874 17 6 12.6340 -2.0826 -2.5289 18 7 12.7771 -2.3139 -3.8167 19 14 12.6441 -3.5049 -1.3178 20 1 11.2475 -3.9208 -1.0313 21 1 13.3908 -4.6476 -1.9025 22 1 13.3017 -3.0769 -0.0571 23 6 12.0203 0.6881 -0.0499 24 6 10.7196 0.7826 0.7650 25 6 10.9501 1.3145 2.1809 26 6 9.6959 1.6324 -0.0067 27 7 3.4764 -0.7622 0.0037 28 8 2.3084 -1.0750 0.0052 29 1 -0.3634 -1.0277 0.0047 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5098 -0.8923 32 1 2.0312 2.1263 -0.0004 33 1 6.0280 -0.1816 -0.8884 34 1 6.0274 -0.1733 0.8915 35 1 8.0395 -1.1385 0.5125 36 1 8.9381 -0.9133 -1.0154 37 1 11.7696 -2.0747 0.6540 38 1 10.5795 -2.2075 -0.6722 39 1 12.8882 -3.2228 -4.1369 40 1 12.1084 1.5472 -0.7150 41 1 12.8791 0.6444 0.6199 42 1 10.0063 1.3170 2.7263 43 1 11.6663 0.6752 2.6971 44 1 11.3419 2.3303 2.1283 45 1 10.0353 1.7890 -1.0306 46 1 9.5541 2.5914 0.4918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091756382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:00 Heat of formation + Delta-G solvation = 11.995664 kcal Electronic energy + Delta-G solvation = -29239.296522 eV Core-core repulsion = 25133.362959 eV Total energy + Delta-G solvation = -4105.933563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.98155 -41.89290 -40.55616 -39.29215 -36.70512 -34.81666 -34.64347 -33.61722 -33.16222 -31.92046 -30.37896 -28.67728 -27.99783 -27.17338 -26.93223 -24.51388 -23.99031 -22.48959 -22.43616 -20.79716 -20.27855 -19.07822 -18.97791 -18.71677 -18.06031 -17.77501 -17.66368 -17.18766 -16.90003 -16.34247 -16.00351 -15.57408 -15.27119 -15.04984 -14.92242 -14.57292 -14.39581 -14.23510 -14.17473 -13.93305 -13.92140 -13.58857 -13.46245 -13.23765 -13.20441 -12.99723 -12.86429 -12.61965 -12.36921 -12.16231 -12.05759 -11.91489 -11.60752 -11.52545 -11.33727 -11.21184 -10.84047 -10.54015 -10.31473 -9.93534 -9.09822 -8.15591 -5.43673 0.42117 1.03545 1.15231 1.23828 1.29539 1.41465 1.49611 2.03317 2.29032 2.42141 2.99885 3.05297 3.11747 3.26204 3.36703 3.55611 3.69128 3.78001 3.82558 3.88011 3.96642 4.07821 4.13148 4.22470 4.33438 4.36484 4.59750 4.61735 4.69896 4.75527 4.77854 4.79376 4.80283 4.83638 4.88062 4.89226 5.05447 5.12523 5.15297 5.25429 5.26989 5.40138 5.64388 5.76038 6.10457 6.24557 6.71202 6.78102 7.19157 7.51351 8.11370 9.04443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002753 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.466803 B =10168.075128 C =11209.452669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 C -0.250 4.250 4 C 0.188 3.812 5 O -0.279 6.279 6 C 0.057 3.943 7 C 0.536 3.464 8 O -0.565 6.565 9 N -0.605 5.605 10 C 0.103 3.897 11 C -0.096 4.096 12 H 0.128 0.872 13 C 0.103 3.897 14 N -0.626 5.626 15 C -0.225 4.225 16 H 0.055 0.945 17 C -0.043 4.043 18 N -0.963 5.963 19 Si 0.949 3.051 20 H -0.262 1.262 21 H -0.315 1.315 22 H -0.261 1.261 23 C 0.143 3.857 24 C -0.072 4.072 25 C -0.119 4.119 26 C 0.125 3.875 27 N -0.433 5.433 28 O 0.093 5.907 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.261 0.739 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.799 3.671 15.263 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.271 4.271 4 C -0.009 4.009 5 O -0.185 6.185 6 C -0.021 4.021 7 C 0.324 3.676 8 O -0.444 6.444 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.116 4.116 12 H 0.146 0.854 13 C -0.021 4.021 14 N -0.352 5.352 15 C -0.354 4.354 16 H 0.073 0.927 17 C -0.237 4.237 18 N -0.611 5.611 19 Si 0.777 3.223 20 H -0.188 1.188 21 H -0.244 1.244 22 H -0.186 1.186 23 C 0.018 3.982 24 C -0.074 4.074 25 C -0.176 4.176 26 C 0.003 3.997 27 N -0.161 5.161 28 O 0.033 5.967 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.215 0.785 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.001 3.525 15.046 27.710 hybrid contribution 0.717 -0.139 -0.570 0.926 sum -22.285 3.385 14.476 26.788 Atomic orbital electron populations 1.20689 0.79775 1.06453 1.06189 1.25180 0.98118 0.84062 0.97961 1.22161 0.87104 1.03249 1.14613 1.22473 0.88644 0.88635 1.01138 1.86208 1.10802 1.31892 1.89573 1.22411 0.80911 0.92669 1.06080 1.19825 0.83061 0.88304 0.76401 1.90715 1.85467 1.16782 1.51390 1.48401 1.04456 1.09283 1.71630 1.22435 0.97643 0.80741 1.01083 1.22805 0.93198 0.95248 1.00343 0.85361 1.22393 0.92906 0.93286 0.93495 1.45410 1.60142 1.12368 1.17256 1.18533 1.34368 0.92506 0.89969 0.92679 1.25663 1.01007 0.99795 0.97203 1.69962 1.55988 1.20985 1.14133 0.85932 0.78358 0.78714 0.79312 1.18810 1.24378 1.18626 1.21526 0.95025 0.88717 0.92949 1.22073 0.94289 0.94169 0.96912 1.21646 1.02493 1.01632 0.91825 1.22143 0.81967 0.95706 0.99902 1.74162 0.99142 1.14367 1.28387 1.84760 1.10048 1.33001 1.68931 0.88277 0.86774 0.87011 0.78549 0.87887 0.86408 0.87262 0.92199 0.94015 0.92782 0.93011 0.93719 0.94088 0.91462 0.90884 0.91306 0.93063 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 71.23 0.74 0.54 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -4.46 11.11 22.50 0.25 -4.21 16 4 C 0.19 4.77 8.01 85.79 0.69 5.46 16 5 O -0.28 -8.20 9.74 -71.22 -0.69 -8.90 16 6 C 0.06 1.50 5.12 71.24 0.36 1.86 16 7 C 0.54 16.88 7.95 87.66 0.70 17.57 16 8 O -0.56 -22.02 16.73 16.02 0.27 -21.75 16 9 N -0.60 -17.95 3.32 -815.09 -2.71 -20.66 16 10 C 0.10 2.79 6.30 86.51 0.54 3.34 16 11 C -0.10 -2.64 3.62 -9.63 -0.03 -2.68 16 12 H 0.13 2.64 7.88 -2.39 -0.02 2.62 16 13 C 0.10 3.88 4.16 86.05 0.36 4.24 16 14 N -0.63 -28.25 3.25 -689.22 -2.24 -30.50 16 15 C -0.23 -12.68 10.67 84.03 0.90 -11.78 16 16 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 17 C -0.04 -2.49 5.46 84.86 0.46 -2.03 16 18 N -0.96 -60.77 13.97 21.65 0.30 -60.47 16 19 Si 0.95 45.18 24.35 68.60 1.67 46.85 16 20 H -0.26 -11.39 6.32 99.48 0.63 -10.76 16 21 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 22 H -0.26 -11.77 6.48 99.48 0.64 -11.13 16 23 C 0.14 5.14 6.22 86.50 0.54 5.68 16 24 C -0.07 -2.02 1.09 -51.02 -0.06 -2.08 16 25 C -0.12 -2.44 8.49 71.98 0.61 -1.83 16 26 C 0.13 3.85 6.12 86.52 0.53 4.38 16 27 N -0.43 -10.83 11.54 -172.58 -1.99 -12.82 16 28 O 0.09 1.86 11.19 71.18 0.80 2.66 16 29 H 0.10 0.07 8.14 -2.38 -0.02 0.06 16 30 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.12 2.50 7.86 -2.39 -0.02 2.48 16 35 H 0.11 2.16 7.31 -2.39 -0.02 2.14 16 36 H 0.06 1.96 7.41 -2.39 -0.02 1.94 16 37 H 0.04 1.55 6.21 -2.39 -0.01 1.53 16 38 H 0.05 2.20 5.18 -2.39 -0.01 2.18 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.04 1.68 7.51 -2.38 -0.02 1.66 16 41 H 0.04 1.40 7.90 -2.39 -0.02 1.38 16 42 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.05 1.86 7.39 -2.39 -0.02 1.84 16 46 H 0.08 2.48 7.60 -2.38 -0.02 2.46 16 Total: -1.00 -79.09 369.94 3.04 -76.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.85 Total: 10.73 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.78 Total: 18.81 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.64 Total: -124.44 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: 0.37 Total: -27.99 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -79.09 3.04 -76.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091756382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.047 kcal (2) G-P(sol) polarization free energy of solvation -79.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds