Wall clock time and date at job start Tue Mar 31 2020 19:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35132 * 126.43755 * 2 1 4 4 O 1.33930 * 108.76790 * 179.97438 * 3 2 1 5 5 C 1.34919 * 109.38133 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98738 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00211 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99606 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99464 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47146 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61779 * 184.99624 * 10 9 8 12 12 C 1.53781 * 87.08260 * 219.93457 * 11 10 9 13 13 N 1.46900 * 113.61428 * 270.79940 * 12 11 10 14 14 C 1.46895 * 110.99924 * 203.46824 * 13 12 11 15 15 C 1.50700 * 109.47106 * 180.02562 * 14 13 12 16 16 O 1.21294 * 120.00101 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00188 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00693 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99366 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00595 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99867 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47173 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47263 * 119.99758 * 22 20 18 25 25 H 1.48500 * 109.46973 * 239.99409 * 22 20 18 26 26 C 1.53786 * 87.17350 * 25.39213 * 12 11 10 27 27 C 1.36541 * 108.02456 * 0.22329 * 5 4 3 28 28 H 1.09001 * 109.47072 * 90.02158 * 1 2 3 29 29 H 1.08999 * 109.46557 * 210.02204 * 1 2 3 30 30 H 1.08998 * 109.47061 * 330.02205 * 1 2 3 31 31 H 1.08003 * 125.61987 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00536 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.47550 * 59.99677 * 9 8 6 34 34 H 1.09000 * 109.47294 * 299.99273 * 9 8 6 35 35 H 1.08997 * 112.84789 * 316.19733 * 10 9 8 36 36 H 1.09001 * 113.61250 * 105.38275 * 11 10 9 37 37 H 1.08997 * 113.61225 * 334.48116 * 11 10 9 38 38 H 1.09002 * 113.61445 * 139.98212 * 12 11 10 39 39 H 1.00902 * 110.99925 * 79.51829 * 13 12 11 40 40 H 1.08994 * 109.47448 * 300.00310 * 14 13 12 41 41 H 1.09001 * 109.47145 * 60.00387 * 14 13 12 42 42 H 0.97006 * 119.99894 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00057 * 179.97438 * 21 20 18 44 44 H 1.08993 * 113.61491 * 89.15923 * 26 12 11 45 45 H 1.09000 * 113.61138 * 220.06261 * 26 12 11 46 46 H 1.07997 * 126.64697 * 179.78063 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6806 0.0006 5 6 3.6261 -0.6680 0.0004 6 6 4.8380 -1.4939 0.0003 7 8 4.7473 -2.7074 -0.0003 8 7 6.0522 -0.9088 0.0010 9 6 7.2627 -1.7339 0.0003 10 6 8.4966 -0.8292 0.0007 11 6 9.8234 -1.5967 -0.1227 12 6 10.3990 -0.6104 0.9072 13 7 10.9838 0.5950 0.3047 14 6 11.9727 1.2058 1.2030 15 6 12.5491 2.4370 0.5527 16 8 12.1728 2.7729 -0.5504 17 7 13.4828 3.1649 1.1967 18 6 14.0069 4.2853 0.6054 19 1 13.6718 4.5843 -0.3768 20 6 14.9691 5.0360 1.2697 21 7 15.3764 4.6724 2.4649 22 14 15.6836 6.5622 0.4635 23 1 15.0631 6.7531 -0.8720 24 1 15.4048 7.7476 1.3134 25 1 17.1514 6.3988 0.3082 26 6 8.9588 -0.4118 1.4087 27 6 2.3409 -1.1290 -0.0054 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9770 2.1146 -0.0004 32 1 6.1245 0.0584 0.0011 33 1 7.2737 -2.3624 -0.8902 34 1 7.2736 -2.3638 0.8898 35 1 8.4091 0.0061 -0.6941 36 1 10.2836 -1.5177 -1.1076 37 1 9.7691 -2.6235 0.2391 38 1 11.0559 -1.0785 1.6404 39 1 10.2661 1.2579 0.0527 40 1 11.4901 1.4825 2.1403 41 1 12.7719 0.4920 1.4027 42 1 13.7835 2.8965 2.0791 43 1 16.0484 5.1963 2.9285 44 1 8.6677 -1.1140 2.1898 45 1 8.7221 0.6225 1.6582 46 1 2.0268 -2.1623 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100586295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:18 Heat of formation + Delta-G solvation = -41.648801 kcal Electronic energy + Delta-G solvation = -27104.817044 eV Core-core repulsion = 22996.557283 eV Total energy + Delta-G solvation = -4108.259762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.09962 -40.13106 -39.23081 -38.03656 -35.29395 -34.57418 -34.02911 -33.06558 -31.22896 -31.05706 -28.65776 -27.50775 -26.22022 -25.75911 -24.14776 -23.53517 -22.20722 -21.53209 -20.38540 -19.32151 -19.04304 -18.28414 -17.90682 -16.80656 -16.72327 -16.47738 -16.06488 -15.60212 -15.38714 -15.02335 -14.58704 -14.41453 -14.28752 -13.95880 -13.85234 -13.69295 -13.57692 -13.45170 -13.10478 -13.03090 -12.74508 -12.61068 -12.31973 -12.16333 -11.93707 -11.56210 -11.53826 -11.08814 -10.97076 -10.79199 -10.44944 -10.35558 -10.25287 -10.20382 -10.13710 -9.53604 -9.47963 -8.97069 -8.47405 -8.07156 -7.97295 -6.43275 -3.84113 0.67838 1.88552 2.29779 2.83751 2.87616 3.15218 3.25936 3.33152 3.89068 4.03064 4.21674 4.26036 4.33275 4.42063 4.48118 4.54811 4.61029 4.87457 4.88871 5.07211 5.15258 5.15973 5.19478 5.25346 5.35515 5.39056 5.44856 5.49595 5.54172 5.59268 5.64345 5.73203 5.79743 5.87233 5.96666 5.98175 6.07739 6.10119 6.20337 6.30085 6.42927 7.11101 7.24244 7.54006 7.63903 7.72780 8.05029 8.59558 9.16456 9.52762 10.04006 10.74485 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.001707 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.760055 B =16398.039919 C =17709.944629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.196 4.196 3 C -0.007 4.007 4 O -0.161 6.161 5 C -0.077 4.077 6 C 0.601 3.399 7 O -0.523 6.523 8 N -0.715 5.715 9 C 0.129 3.871 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.068 3.932 13 N -0.648 5.648 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.167 4.167 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.210 0.790 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.140 -11.348 -0.224 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.197 4.197 3 C -0.077 4.077 4 O -0.056 6.056 5 C -0.129 4.129 6 C 0.387 3.613 7 O -0.401 6.401 8 N -0.366 5.366 9 C 0.007 3.993 10 C -0.143 4.143 11 C -0.159 4.159 12 C -0.043 4.043 13 N -0.280 5.280 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.207 4.207 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.242 0.758 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.513 -12.058 -1.213 27.346 hybrid contribution -0.128 1.505 0.974 1.797 sum -24.641 -10.553 -0.239 26.807 Atomic orbital electron populations 1.20191 0.88526 1.02945 1.02421 1.20513 0.97810 0.92378 1.08990 1.24255 0.79847 1.00159 1.03406 1.84074 1.29422 1.21610 1.70532 1.22064 0.96177 0.80648 1.14056 1.16553 0.81337 0.86349 0.77012 1.90886 1.86073 1.12284 1.50896 1.45953 1.05382 1.11152 1.74087 1.21523 0.81914 0.93270 1.02625 1.22860 0.93521 0.99394 0.98540 1.23024 0.93895 0.97704 1.01297 1.22581 0.93200 0.92946 0.95610 1.59936 1.18386 1.08108 1.41562 1.21710 0.96015 0.96467 0.93946 1.19822 0.84082 0.86026 0.87529 1.90523 1.63483 1.72008 1.20826 1.41870 1.35415 1.24125 1.18591 1.19759 1.18934 1.01288 1.02927 0.87859 1.25263 0.97183 0.99682 0.95814 1.69619 1.31443 1.40344 1.12863 0.85799 0.78600 0.80670 0.79268 1.19221 1.20780 1.20724 1.23841 0.98457 1.01970 0.96385 1.21852 0.90552 1.00610 1.00826 0.91191 0.91238 0.91359 0.77337 0.75769 0.90895 0.90934 0.88239 0.89936 0.89667 0.89715 0.82934 0.93783 0.89488 0.77452 0.91917 0.89649 0.91361 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.39 36.01 0.37 -0.01 16 2 C -0.20 -1.42 6.14 -104.93 -0.64 -2.06 16 3 C -0.01 -0.05 12.00 29.63 0.36 0.31 16 4 O -0.16 -1.45 10.40 4.98 0.05 -1.40 16 5 C -0.08 -0.79 7.13 -36.80 -0.26 -1.05 16 6 C 0.60 6.86 7.79 -12.86 -0.10 6.76 16 7 O -0.52 -7.45 16.86 5.20 0.09 -7.36 16 8 N -0.72 -6.73 5.55 -61.62 -0.34 -7.07 16 9 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 10 C -0.12 -1.13 3.50 -89.71 -0.31 -1.45 16 11 C -0.12 -1.19 7.44 -25.92 -0.19 -1.38 16 12 C 0.07 0.78 4.26 -66.90 -0.28 0.49 16 13 N -0.65 -10.00 6.19 -107.13 -0.66 -10.67 16 14 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 15 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 16 O -0.58 -15.73 15.78 5.55 0.09 -15.65 16 17 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.17 -1.59 7.18 -25.82 -0.19 -1.78 16 27 C -0.12 -1.08 10.57 -39.40 -0.42 -1.50 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.21 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.41 3.29 8.23 -40.82 -0.34 2.95 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.35 5.57 7.79 -39.29 -0.31 5.26 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 42 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.08 0.74 7.91 -51.93 -0.41 0.32 16 45 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 46 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -33.57 395.30 -7.99 -41.57 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.77 Total: 14.07 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.05 Total: 2.55 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.34 Total: -55.66 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.23 Total: -24.41 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.57 -7.99 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100586295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.083 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds