Wall clock time and date at job start Tue Mar 31 2020 19:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35132 * 126.43755 * 2 1 4 4 O 1.33930 * 108.76790 * 179.97438 * 3 2 1 5 5 C 1.34919 * 109.38133 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98738 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00211 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99606 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99464 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47146 * 179.97438 * 9 8 6 11 11 C 1.53782 * 113.61779 * 184.99624 * 10 9 8 12 12 C 1.53781 * 87.08260 * 219.93457 * 11 10 9 13 13 N 1.46900 * 113.61428 * 270.79940 * 12 11 10 14 14 C 1.46895 * 110.99924 * 203.46824 * 13 12 11 15 15 C 1.50700 * 109.47106 * 180.02562 * 14 13 12 16 16 O 1.21294 * 120.00101 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00188 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00693 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99366 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00595 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99867 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47173 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47263 * 119.99758 * 22 20 18 25 25 H 1.48500 * 109.46973 * 239.99409 * 22 20 18 26 26 C 1.53786 * 87.17350 * 25.39213 * 12 11 10 27 27 C 1.36541 * 108.02456 * 0.22329 * 5 4 3 28 28 H 1.09001 * 109.47072 * 90.02158 * 1 2 3 29 29 H 1.08999 * 109.46557 * 210.02204 * 1 2 3 30 30 H 1.08998 * 109.47061 * 330.02205 * 1 2 3 31 31 H 1.08003 * 125.61987 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00536 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.47550 * 59.99677 * 9 8 6 34 34 H 1.09000 * 109.47294 * 299.99273 * 9 8 6 35 35 H 1.08997 * 112.84789 * 316.19733 * 10 9 8 36 36 H 1.09001 * 113.61250 * 105.38275 * 11 10 9 37 37 H 1.08997 * 113.61225 * 334.48116 * 11 10 9 38 38 H 1.09002 * 113.61445 * 139.98212 * 12 11 10 39 39 H 1.00902 * 110.99925 * 79.51829 * 13 12 11 40 40 H 1.08994 * 109.47448 * 300.00310 * 14 13 12 41 41 H 1.09001 * 109.47145 * 60.00387 * 14 13 12 42 42 H 0.97006 * 119.99894 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00057 * 179.97438 * 21 20 18 44 44 H 1.08993 * 113.61491 * 89.15923 * 26 12 11 45 45 H 1.09000 * 113.61138 * 220.06261 * 26 12 11 46 46 H 1.07997 * 126.64697 * 179.78063 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6806 0.0006 5 6 3.6261 -0.6680 0.0004 6 6 4.8380 -1.4939 0.0003 7 8 4.7473 -2.7074 -0.0003 8 7 6.0522 -0.9088 0.0010 9 6 7.2627 -1.7339 0.0003 10 6 8.4966 -0.8292 0.0007 11 6 9.8234 -1.5967 -0.1227 12 6 10.3990 -0.6104 0.9072 13 7 10.9838 0.5950 0.3047 14 6 11.9727 1.2058 1.2030 15 6 12.5491 2.4370 0.5527 16 8 12.1728 2.7729 -0.5504 17 7 13.4828 3.1649 1.1967 18 6 14.0069 4.2853 0.6054 19 1 13.6718 4.5843 -0.3768 20 6 14.9691 5.0360 1.2697 21 7 15.3764 4.6724 2.4649 22 14 15.6836 6.5622 0.4635 23 1 15.0631 6.7531 -0.8720 24 1 15.4048 7.7476 1.3134 25 1 17.1514 6.3988 0.3082 26 6 8.9588 -0.4118 1.4087 27 6 2.3409 -1.1290 -0.0054 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9770 2.1146 -0.0004 32 1 6.1245 0.0584 0.0011 33 1 7.2737 -2.3624 -0.8902 34 1 7.2736 -2.3638 0.8898 35 1 8.4091 0.0061 -0.6941 36 1 10.2836 -1.5177 -1.1076 37 1 9.7691 -2.6235 0.2391 38 1 11.0559 -1.0785 1.6404 39 1 10.2661 1.2579 0.0527 40 1 11.4901 1.4825 2.1403 41 1 12.7719 0.4920 1.4027 42 1 13.7835 2.8965 2.0791 43 1 16.0484 5.1963 2.9285 44 1 8.6677 -1.1140 2.1898 45 1 8.7221 0.6225 1.6582 46 1 2.0268 -2.1623 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100586295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:17 Heat of formation + Delta-G solvation = -66.753810 kcal Electronic energy + Delta-G solvation = -27105.905679 eV Core-core repulsion = 22996.557283 eV Total energy + Delta-G solvation = -4109.348397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72575 -41.01395 -40.31790 -39.69336 -36.28806 -35.90349 -35.16163 -34.30130 -33.23078 -31.74524 -29.51885 -28.22988 -27.60629 -26.55129 -25.73890 -24.43728 -23.02897 -22.18775 -21.16261 -21.08254 -19.93732 -19.89611 -18.96818 -17.71682 -17.49204 -17.37957 -17.32146 -16.80925 -16.45393 -16.27844 -16.10980 -15.72087 -15.56995 -15.05918 -14.89593 -14.49210 -14.35337 -14.12484 -14.09961 -13.96629 -13.63193 -13.53180 -13.49899 -13.24611 -13.22336 -12.93711 -12.65705 -12.57949 -12.40725 -12.11811 -11.83800 -11.66977 -11.51676 -11.29674 -11.07455 -10.76910 -10.33426 -10.28247 -10.01615 -9.57368 -9.27080 -8.47019 -5.95754 -0.02689 1.30672 1.36614 1.42119 1.56193 1.63244 2.03193 2.05066 2.17240 2.29009 2.89710 3.20408 3.47957 3.58501 3.61565 3.74087 3.79796 3.81580 4.03360 4.05138 4.28135 4.32742 4.34980 4.47573 4.54242 4.61444 4.67021 4.68378 4.82919 4.86551 4.87106 4.91209 4.93171 5.01577 5.06219 5.11242 5.24441 5.28854 5.40591 5.42227 5.48614 5.80343 5.93898 6.17092 6.34993 6.44113 6.59969 6.92041 7.12548 7.56180 8.11394 8.70521 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.001707 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.760055 B =16398.039919 C =17709.944629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.207 4.207 3 C 0.003 3.997 4 O -0.169 6.169 5 C -0.106 4.106 6 C 0.599 3.401 7 O -0.561 6.561 8 N -0.707 5.707 9 C 0.134 3.866 10 C -0.114 4.114 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.663 5.663 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.155 4.155 27 C -0.124 4.124 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.345 0.655 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.081 -10.908 0.576 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.066 4.066 4 O -0.064 6.064 5 C -0.157 4.157 6 C 0.387 3.613 7 O -0.442 6.442 8 N -0.357 5.357 9 C 0.011 3.989 10 C -0.133 4.133 11 C -0.153 4.153 12 C -0.051 4.051 13 N -0.295 5.295 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.194 4.194 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.265 0.735 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.443 -11.624 -0.385 27.975 hybrid contribution 0.086 1.365 0.710 1.541 sum -25.358 -10.259 0.324 27.356 Atomic orbital electron populations 1.20264 0.86590 1.03906 1.03155 1.20858 0.99187 0.91721 1.09012 1.25105 0.78804 1.01729 1.00959 1.84063 1.30752 1.20892 1.70744 1.21874 0.95970 0.81313 1.16572 1.16728 0.82068 0.86077 0.76451 1.90851 1.86689 1.13749 1.52938 1.45918 1.05051 1.11537 1.73180 1.21483 0.81676 0.93147 1.02551 1.22730 0.93243 0.98962 0.98330 1.23028 0.93621 0.98539 1.00156 1.22688 0.94285 0.91604 0.96474 1.59938 1.18521 1.08919 1.42121 1.21560 0.96949 0.93794 0.94264 1.20923 0.82747 0.86960 0.86945 1.90491 1.64453 1.73366 1.22777 1.41937 1.36145 1.24064 1.18861 1.19710 1.20697 1.03260 1.02746 0.90347 1.26030 0.96839 1.02074 0.96268 1.69674 1.31589 1.41300 1.13502 0.84872 0.78030 0.77339 0.78095 1.19840 1.19546 1.19650 1.23766 0.96742 1.02162 0.96776 1.22097 0.90865 1.01379 1.00148 0.90507 0.91181 0.89551 0.73503 0.74975 0.91345 0.90662 0.88993 0.91437 0.87548 0.88653 0.83560 0.91490 0.87778 0.76951 0.91299 0.88050 0.91800 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.39 71.24 0.74 0.15 16 2 C -0.21 -2.70 6.14 -20.06 -0.12 -2.82 16 3 C 0.00 0.04 12.00 67.10 0.81 0.84 16 4 O -0.17 -2.88 10.40 -5.08 -0.05 -2.93 16 5 C -0.11 -2.16 7.13 24.07 0.17 -1.99 16 6 C 0.60 13.90 7.79 86.44 0.67 14.57 16 7 O -0.56 -16.44 16.86 -4.31 -0.07 -16.51 16 8 N -0.71 -13.11 5.55 -467.10 -2.59 -15.71 16 9 C 0.13 2.34 5.51 86.38 0.48 2.81 16 10 C -0.11 -1.94 3.50 -10.21 -0.04 -1.98 16 11 C -0.11 -2.09 7.44 31.12 0.23 -1.86 16 12 C 0.06 1.26 4.26 45.44 0.19 1.45 16 13 N -0.66 -19.88 6.19 -492.86 -3.05 -22.93 16 14 C 0.07 2.21 6.02 85.56 0.52 2.73 16 15 C 0.44 20.57 7.82 87.66 0.69 21.26 16 16 O -0.62 -34.42 15.78 -3.07 -0.05 -34.47 16 17 N -0.57 -29.22 5.29 -306.99 -1.62 -30.84 16 18 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 22 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.16 -2.66 7.18 31.18 0.22 -2.43 16 27 C -0.12 -2.28 10.57 22.39 0.24 -2.04 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.25 0.54 8.06 -2.91 -0.02 0.51 16 32 H 0.41 6.50 8.23 -92.71 -0.76 5.74 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.31 7.86 -2.39 -0.02 1.29 16 35 H 0.09 1.74 8.05 -2.39 -0.02 1.73 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.10 1.84 7.88 -2.39 -0.02 1.82 16 39 H 0.34 10.87 7.79 -89.69 -0.70 10.17 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 42 H 0.40 19.15 7.90 -92.70 -0.73 18.42 16 43 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 44 H 0.10 1.46 7.91 -2.39 -0.02 1.44 16 45 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 46 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -73.89 395.30 -0.22 -74.11 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -1.16 Total: 41.22 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.07 Total: 12.34 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -6.98 Total: -118.53 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.17 Total: -53.92 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.89 -0.22 -74.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100586295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.358 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds