Wall clock time and date at job start Tue Mar 31 2020 19:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34872 * 119.09874 * 2 1 4 4 C 1.41670 * 119.33878 * 180.02562 * 3 2 1 5 5 O 1.22085 * 121.06386 * 179.97438 * 4 3 2 6 6 C 1.47104 * 117.86394 * 359.97438 * 4 3 2 7 7 C 1.47289 * 120.88126 * 180.02562 * 6 4 3 8 8 O 1.21613 * 119.99785 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99590 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99716 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.55047 * 60.12739 * 11 10 9 13 13 C 1.53290 * 109.51494 * 180.25274 * 11 10 9 14 14 N 1.47232 * 108.40798 * 172.23175 * 13 11 10 15 15 C 1.36930 * 121.03328 * 129.46021 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18598 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18827 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48493 * 109.47161 * 89.99376 * 19 17 15 21 21 H 1.48497 * 109.47448 * 210.00216 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00010 * 19 17 15 23 23 C 1.47154 * 117.98230 * 309.48797 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.51870 * 23 14 13 25 25 O 1.42959 * 109.51371 * 300.00367 * 11 10 9 26 26 C 1.37989 * 118.23293 * 0.28027 * 6 4 3 27 27 N 1.34349 * 120.37541 * 359.41639 * 26 6 4 28 28 H 0.96995 * 118.80703 * 180.33468 * 27 26 6 29 29 H 1.08997 * 109.47319 * 90.00484 * 1 2 3 30 30 H 1.09003 * 109.47039 * 210.00264 * 1 2 3 31 31 H 1.09003 * 109.47358 * 330.00046 * 1 2 3 32 32 H 1.08005 * 120.32759 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00195 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46877 * 59.99845 * 10 9 7 35 35 H 1.08999 * 109.47195 * 299.99813 * 10 9 7 36 36 H 1.09000 * 109.47604 * 299.87595 * 12 11 10 37 37 H 1.09004 * 109.47201 * 59.87360 * 12 11 10 38 38 H 1.09000 * 109.47333 * 179.87598 * 12 11 10 39 39 H 1.09001 * 109.68414 * 291.94993 * 13 11 10 40 40 H 1.09001 * 109.68139 * 52.50357 * 13 11 10 41 41 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.68310 * 290.77188 * 23 14 13 43 43 H 1.09005 * 109.67869 * 170.25970 * 23 14 13 44 44 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 45 45 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 46 46 H 1.07997 * 119.81288 * 179.69974 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5796 1.1844 -0.0006 5 8 4.2051 2.2328 -0.0010 6 6 4.2725 -0.1132 -0.0005 7 6 5.7437 -0.1845 -0.0005 8 8 6.4021 0.8380 -0.0001 9 7 6.3601 -1.3830 -0.0010 10 6 7.8234 -1.4540 -0.0016 11 6 8.2629 -2.9195 -0.0014 12 6 7.7217 -3.6165 -1.2513 13 6 9.7940 -2.9950 0.0044 14 7 10.1895 -4.4006 0.1933 15 6 11.0948 -4.9976 -0.6428 16 1 11.0735 -6.0678 -0.7862 17 6 12.0401 -4.2272 -1.3060 18 7 12.2936 -3.0016 -0.8986 19 14 12.9526 -4.9299 -2.7768 20 1 12.1973 -4.6268 -4.0188 21 1 14.3043 -4.3206 -2.8581 22 1 13.0813 -6.4013 -2.6225 23 6 9.5819 -5.1450 1.3077 24 6 8.0611 -4.9649 1.2384 25 8 7.7552 -3.5703 1.1658 26 6 3.5077 -1.2617 -0.0059 27 7 2.1664 -1.1847 0.0008 28 1 1.6511 -2.0064 0.0018 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6135 2.1084 0.0004 33 1 5.8350 -2.1985 -0.0010 34 1 8.2115 -0.9586 0.8884 35 1 8.2109 -0.9583 -0.8916 36 1 6.6328 -3.5664 -1.2525 37 1 8.1092 -3.1199 -2.1409 38 1 8.0374 -4.6598 -1.2510 39 1 10.1832 -2.6289 -0.9457 40 1 10.1883 -2.3899 0.8208 41 1 12.9539 -2.4631 -1.3623 42 1 9.9548 -4.7565 2.2553 43 1 9.8305 -6.2028 1.2213 44 1 7.6748 -5.4689 0.3524 45 1 7.6028 -5.3931 2.1298 46 1 3.9900 -2.2279 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108320457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:48 Heat of formation + Delta-G solvation = -52.991795 kcal Electronic energy + Delta-G solvation = -29461.612350 eV Core-core repulsion = 25352.860720 eV Total energy + Delta-G solvation = -4108.751631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21636 -39.51416 -38.58636 -37.63530 -34.81509 -34.31130 -33.71118 -32.02497 -31.28848 -31.11814 -28.58335 -27.96289 -26.39340 -25.49438 -24.22290 -23.24444 -22.43638 -21.47620 -20.67549 -19.27955 -18.54114 -17.72006 -17.07363 -16.48699 -16.27575 -15.84858 -15.64411 -15.17359 -15.03027 -14.74771 -14.47834 -14.32388 -14.04294 -13.67458 -13.56840 -13.51400 -13.33442 -13.20308 -13.02401 -12.96993 -12.72877 -12.54275 -12.41097 -11.85396 -11.61010 -11.20479 -11.01855 -10.82761 -10.68634 -10.31863 -10.24940 -9.99985 -9.88468 -9.79627 -9.57198 -9.22998 -9.03382 -8.73500 -8.54541 -8.26061 -6.75305 -5.84593 -3.28515 0.63654 1.06018 2.33527 3.06912 3.32570 3.36299 3.40690 3.42649 3.83897 3.84927 4.17014 4.23706 4.42514 4.43426 4.64600 4.78204 4.80248 5.12072 5.17732 5.20592 5.33787 5.39742 5.47940 5.50863 5.57739 5.65883 5.87337 5.91621 6.04210 6.06750 6.13087 6.18516 6.33935 6.37865 6.44641 6.48721 6.58450 6.70424 6.78495 6.80904 7.07234 7.48076 7.69886 7.79479 7.86541 8.06094 8.32391 8.58032 9.10104 9.73271 10.30497 11.23304 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.002637 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.686090 B =10615.380660 C =11169.757580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 C -0.269 4.269 4 C 0.406 3.594 5 O -0.476 6.476 6 C -0.291 4.291 7 C 0.566 3.434 8 O -0.513 6.513 9 N -0.722 5.722 10 C 0.142 3.858 11 C 0.079 3.921 12 C -0.160 4.160 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 C 0.170 3.830 27 N -0.579 5.579 28 H 0.420 0.580 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.393 0.607 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.256 0.744 42 H 0.025 0.975 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.880 -2.119 1.492 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.046 3.954 3 C -0.293 4.293 4 C 0.292 3.708 5 O -0.357 6.357 6 C -0.302 4.302 7 C 0.352 3.648 8 O -0.388 6.388 9 N -0.375 5.375 10 C 0.018 3.982 11 C 0.038 3.962 12 C -0.218 4.218 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 C 0.039 3.961 27 N -0.186 5.186 28 H 0.256 0.744 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.976 -0.549 1.568 26.029 hybrid contribution 0.244 -1.490 -0.893 1.754 sum -25.732 -2.039 0.675 25.821 Atomic orbital electron populations 1.21092 0.87937 1.04869 1.04321 1.20269 0.94748 0.85543 0.94866 1.22279 0.96316 0.97316 1.13372 1.18178 0.88240 0.87969 0.76449 1.90836 1.69943 1.33210 1.41664 1.22609 0.94669 0.95091 1.17871 1.17491 0.86058 0.83769 0.77487 1.90862 1.65817 1.33953 1.48212 1.45877 1.08043 1.07435 1.76178 1.21335 0.78678 0.95065 1.03079 1.22556 0.98320 0.90226 0.85135 1.22200 0.98565 1.02938 0.98095 1.21316 0.86428 0.86188 1.02857 1.44016 1.48382 1.08891 1.30136 1.19151 1.07732 0.92428 1.19192 0.91411 1.25049 0.96889 0.96996 1.00568 1.70008 1.34736 1.09727 1.39913 0.86282 0.79012 0.78408 0.83006 1.21363 1.21658 1.20470 1.21590 0.91519 0.96769 0.91881 1.23029 0.97607 0.82374 1.00192 1.87813 1.77352 1.22154 1.43075 1.22235 0.82572 1.00066 0.91218 1.40687 1.05903 1.08935 1.63069 0.74351 0.89260 0.90484 0.88771 0.83106 0.77247 0.90795 0.90008 0.94216 0.91793 0.90838 0.88492 0.95150 0.93348 0.95662 0.92106 0.93466 0.90267 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.18 10.03 36.01 0.36 0.18 16 2 C 0.15 0.83 6.79 -82.13 -0.56 0.28 16 3 C -0.27 -2.62 9.57 -39.47 -0.38 -3.00 16 4 C 0.41 6.21 6.96 -34.68 -0.24 5.97 16 5 O -0.48 -9.83 16.41 -15.17 -0.25 -10.08 16 6 C -0.29 -3.89 6.05 -102.71 -0.62 -4.52 16 7 C 0.57 9.72 7.77 -12.58 -0.10 9.62 16 8 O -0.51 -11.56 15.57 -14.75 -0.23 -11.79 16 9 N -0.72 -10.73 5.11 -61.43 -0.31 -11.04 16 10 C 0.14 2.53 4.82 -4.04 -0.02 2.51 16 11 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 12 C -0.16 -2.64 7.92 37.16 0.29 -2.34 16 13 C 0.16 3.69 4.12 -3.49 -0.01 3.68 16 14 N -0.59 -14.22 2.57 -171.76 -0.44 -14.66 16 15 C -0.26 -6.74 9.65 -15.06 -0.15 -6.89 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 18 N -0.90 -25.74 11.14 55.49 0.62 -25.13 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C 0.11 2.19 6.73 -3.53 -0.02 2.16 16 24 C 0.05 0.75 6.60 37.31 0.25 1.00 16 25 O -0.38 -6.81 9.97 -35.23 -0.35 -7.16 16 26 C 0.17 1.23 10.74 -16.54 -0.18 1.05 16 27 N -0.58 -2.38 5.16 -9.00 -0.05 -2.42 16 28 H 0.42 -0.03 8.70 -40.82 -0.35 -0.38 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.08 -0.03 8.12 -51.93 -0.42 -0.45 16 31 H 0.09 0.12 8.05 -51.93 -0.42 -0.30 16 32 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.39 4.56 5.28 -40.82 -0.22 4.35 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.04 0.51 6.88 -51.93 -0.36 0.16 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.31 6.11 -51.93 -0.32 1.00 16 39 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 44 H 0.05 0.74 6.25 -51.93 -0.32 0.41 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.17 0.70 6.42 -52.49 -0.34 0.37 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -39.28 371.44 -8.38 -47.66 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.41 Total: 1.70 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -1.53 Total: 11.10 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.18 Total: -53.25 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.83 Total: -29.03 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.28 -8.38 -47.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108320457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.328 kcal (2) G-P(sol) polarization free energy of solvation -39.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds