Wall clock time and date at job start Tue Mar 31 2020 19:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34872 * 119.09874 * 2 1 4 4 C 1.41670 * 119.33878 * 180.02562 * 3 2 1 5 5 O 1.22085 * 121.06386 * 179.97438 * 4 3 2 6 6 C 1.47104 * 117.86394 * 359.97438 * 4 3 2 7 7 C 1.47289 * 120.88126 * 180.02562 * 6 4 3 8 8 O 1.21613 * 119.99785 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99590 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99716 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.55047 * 60.12739 * 11 10 9 13 13 C 1.53290 * 109.51494 * 180.25274 * 11 10 9 14 14 N 1.47232 * 108.40798 * 172.23175 * 13 11 10 15 15 C 1.36930 * 121.03328 * 129.46021 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18598 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18827 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48493 * 109.47161 * 89.99376 * 19 17 15 21 21 H 1.48497 * 109.47448 * 210.00216 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00010 * 19 17 15 23 23 C 1.47154 * 117.98230 * 309.48797 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.51870 * 23 14 13 25 25 O 1.42959 * 109.51371 * 300.00367 * 11 10 9 26 26 C 1.37989 * 118.23293 * 0.28027 * 6 4 3 27 27 N 1.34349 * 120.37541 * 359.41639 * 26 6 4 28 28 H 0.96995 * 118.80703 * 180.33468 * 27 26 6 29 29 H 1.08997 * 109.47319 * 90.00484 * 1 2 3 30 30 H 1.09003 * 109.47039 * 210.00264 * 1 2 3 31 31 H 1.09003 * 109.47358 * 330.00046 * 1 2 3 32 32 H 1.08005 * 120.32759 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00195 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46877 * 59.99845 * 10 9 7 35 35 H 1.08999 * 109.47195 * 299.99813 * 10 9 7 36 36 H 1.09000 * 109.47604 * 299.87595 * 12 11 10 37 37 H 1.09004 * 109.47201 * 59.87360 * 12 11 10 38 38 H 1.09000 * 109.47333 * 179.87598 * 12 11 10 39 39 H 1.09001 * 109.68414 * 291.94993 * 13 11 10 40 40 H 1.09001 * 109.68139 * 52.50357 * 13 11 10 41 41 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.68310 * 290.77188 * 23 14 13 43 43 H 1.09005 * 109.67869 * 170.25970 * 23 14 13 44 44 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 45 45 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 46 46 H 1.07997 * 119.81288 * 179.69974 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5796 1.1844 -0.0006 5 8 4.2051 2.2328 -0.0010 6 6 4.2725 -0.1132 -0.0005 7 6 5.7437 -0.1845 -0.0005 8 8 6.4021 0.8380 -0.0001 9 7 6.3601 -1.3830 -0.0010 10 6 7.8234 -1.4540 -0.0016 11 6 8.2629 -2.9195 -0.0014 12 6 7.7217 -3.6165 -1.2513 13 6 9.7940 -2.9950 0.0044 14 7 10.1895 -4.4006 0.1933 15 6 11.0948 -4.9976 -0.6428 16 1 11.0735 -6.0678 -0.7862 17 6 12.0401 -4.2272 -1.3060 18 7 12.2936 -3.0016 -0.8986 19 14 12.9526 -4.9299 -2.7768 20 1 12.1973 -4.6268 -4.0188 21 1 14.3043 -4.3206 -2.8581 22 1 13.0813 -6.4013 -2.6225 23 6 9.5819 -5.1450 1.3077 24 6 8.0611 -4.9649 1.2384 25 8 7.7552 -3.5703 1.1658 26 6 3.5077 -1.2617 -0.0059 27 7 2.1664 -1.1847 0.0008 28 1 1.6511 -2.0064 0.0018 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6135 2.1084 0.0004 33 1 5.8350 -2.1985 -0.0010 34 1 8.2115 -0.9586 0.8884 35 1 8.2109 -0.9583 -0.8916 36 1 6.6328 -3.5664 -1.2525 37 1 8.1092 -3.1199 -2.1409 38 1 8.0374 -4.6598 -1.2510 39 1 10.1832 -2.6289 -0.9457 40 1 10.1883 -2.3899 0.8208 41 1 12.9539 -2.4631 -1.3623 42 1 9.9548 -4.7565 2.2553 43 1 9.8305 -6.2028 1.2213 44 1 7.6748 -5.4689 0.3524 45 1 7.6028 -5.3931 2.1298 46 1 3.9900 -2.2279 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108320457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:47 Heat of formation + Delta-G solvation = -83.788545 kcal Electronic energy + Delta-G solvation = -29462.947798 eV Core-core repulsion = 25352.860720 eV Total energy + Delta-G solvation = -4110.087078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02522 -40.92447 -39.92598 -38.71979 -36.50097 -35.88691 -34.41749 -33.24887 -33.15218 -32.21392 -29.57138 -29.17742 -27.98890 -27.00662 -25.10461 -24.92631 -23.36048 -22.84009 -21.96332 -20.51581 -19.81077 -18.90621 -18.54210 -17.50964 -17.36697 -17.17967 -16.81557 -16.54740 -16.38978 -16.07180 -15.75910 -15.59328 -15.50132 -15.24369 -14.97884 -14.63309 -14.45049 -14.26483 -13.94685 -13.91732 -13.69847 -13.45219 -13.33857 -13.15929 -13.01216 -12.90740 -12.78482 -12.50225 -12.43472 -12.12116 -11.93918 -11.83225 -11.25650 -11.07023 -10.75187 -10.49284 -10.48353 -10.32204 -10.10872 -9.18328 -8.71639 -7.88724 -5.35976 -0.17614 0.35992 1.46345 1.47532 1.56522 1.78490 1.91122 2.10238 2.48848 2.78180 2.83152 3.25900 3.35269 3.50901 3.66075 3.73145 3.92933 3.98380 4.04602 4.13271 4.25290 4.40859 4.45615 4.50359 4.59044 4.67660 4.74557 4.77237 4.80443 4.83829 4.85149 4.99202 5.06208 5.15593 5.22391 5.23142 5.34215 5.38300 5.39278 5.55356 5.62461 5.69518 6.12810 6.30014 6.39206 6.63615 7.07066 7.11556 7.35510 7.77310 8.31284 9.16840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.002637 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.686090 B =10615.380660 C =11169.757580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.194 3.806 3 C -0.304 4.304 4 C 0.381 3.619 5 O -0.569 6.569 6 C -0.353 4.353 7 C 0.563 3.437 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.151 3.849 11 C 0.099 3.901 12 C -0.152 4.152 13 C 0.165 3.835 14 N -0.606 5.606 15 C -0.256 4.256 16 H 0.077 0.923 17 C -0.053 4.053 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.301 1.301 22 H -0.264 1.264 23 C 0.099 3.901 24 C 0.053 3.947 25 O -0.383 6.383 26 C 0.233 3.767 27 N -0.546 5.546 28 H 0.452 0.548 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.065 0.935 40 H -0.012 1.012 41 H 0.249 0.751 42 H 0.009 0.991 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.163 -6.957 1.181 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 C -0.327 4.327 4 C 0.274 3.726 5 O -0.457 6.457 6 C -0.363 4.363 7 C 0.353 3.647 8 O -0.465 6.465 9 N -0.355 5.355 10 C 0.026 3.974 11 C 0.058 3.942 12 C -0.210 4.210 13 C 0.038 3.962 14 N -0.330 5.330 15 C -0.386 4.386 16 H 0.095 0.905 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.795 3.205 20 H -0.211 1.211 21 H -0.228 1.228 22 H -0.188 1.188 23 C -0.026 4.026 24 C -0.024 4.024 25 O -0.303 6.303 26 C 0.097 3.903 27 N -0.153 5.153 28 H 0.295 0.705 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.172 0.828 33 H 0.252 0.748 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.139 0.861 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -31.390 -5.532 1.274 31.899 hybrid contribution 1.707 -0.198 -0.696 1.854 sum -29.682 -5.730 0.579 30.236 Atomic orbital electron populations 1.21305 0.83770 1.06867 1.06100 1.20778 0.96858 0.84275 0.89573 1.22112 0.93733 0.99760 1.17097 1.19036 0.90538 0.87816 0.75198 1.90782 1.71850 1.35754 1.47328 1.22100 0.92707 0.96680 1.24862 1.18126 0.87775 0.83005 0.75795 1.90821 1.67669 1.36387 1.51639 1.45524 1.06474 1.07878 1.75607 1.20974 0.80753 0.94569 1.01135 1.22098 0.94536 0.90695 0.86918 1.22119 1.01335 1.01626 0.95901 1.21068 0.90109 0.85569 0.99434 1.44272 1.48461 1.09025 1.31281 1.19534 1.07360 0.92871 1.18794 0.90497 1.25831 0.98339 0.97379 1.03291 1.70196 1.35757 1.11251 1.41314 0.85269 0.77074 0.78324 0.79825 1.21058 1.22835 1.18816 1.21861 0.94300 0.96802 0.89660 1.23136 0.94510 0.81620 1.03130 1.87825 1.76587 1.23249 1.42602 1.22614 0.83321 0.99492 0.84901 1.40973 1.05186 1.10232 1.58903 0.70510 0.87236 0.87011 0.88343 0.82846 0.74839 0.93551 0.91679 0.89567 0.93042 0.91552 0.91714 0.99439 0.94198 0.97348 0.90811 0.91493 0.86109 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.41 10.03 71.24 0.71 1.12 16 2 C 0.19 1.22 6.79 41.21 0.28 1.50 16 3 C -0.30 -5.75 9.57 22.34 0.21 -5.53 16 4 C 0.38 12.46 6.96 25.45 0.18 12.63 16 5 O -0.57 -26.53 16.41 13.54 0.22 -26.30 16 6 C -0.35 -9.31 6.05 -18.63 -0.11 -9.42 16 7 C 0.56 20.25 7.77 86.62 0.67 20.92 16 8 O -0.59 -29.14 15.57 15.07 0.23 -28.90 16 9 N -0.70 -20.36 5.11 -466.51 -2.38 -22.74 16 10 C 0.15 5.62 4.82 86.38 0.42 6.04 16 11 C 0.10 3.59 0.76 -10.70 -0.01 3.58 16 12 C -0.15 -4.63 7.92 71.98 0.57 -4.06 16 13 C 0.17 8.06 4.12 86.34 0.36 8.42 16 14 N -0.61 -29.46 2.57 -697.33 -1.79 -31.25 16 15 C -0.26 -13.52 9.65 84.04 0.81 -12.71 16 16 H 0.08 3.87 7.88 -2.91 -0.02 3.84 16 17 C -0.05 -2.94 4.95 84.86 0.42 -2.52 16 18 N -0.94 -56.52 11.14 21.65 0.24 -56.28 16 19 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 C 0.10 3.85 6.73 86.35 0.58 4.43 16 24 C 0.05 1.54 6.60 72.08 0.48 2.01 16 25 O -0.38 -12.61 9.97 -148.98 -1.49 -14.10 16 26 C 0.23 2.19 10.74 84.25 0.90 3.09 16 27 N -0.55 -0.92 5.16 -182.38 -0.94 -1.86 16 28 H 0.45 -4.07 8.70 -92.71 -0.81 -4.88 16 29 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.11 -1.00 8.12 -2.39 -0.02 -1.02 16 31 H 0.10 -0.24 8.05 -2.39 -0.02 -0.26 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.41 7.96 5.28 -92.71 -0.49 7.47 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.09 1.80 6.88 -2.39 -0.02 1.78 16 37 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.07 2.15 6.11 -2.39 -0.01 2.14 16 39 H 0.06 3.57 6.14 -2.39 -0.01 3.55 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.07 2.64 7.96 -2.38 -0.02 2.62 16 44 H 0.07 1.74 6.25 -2.39 -0.01 1.72 16 45 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.22 0.11 6.42 -2.91 -0.02 0.09 16 Total: -1.00 -102.63 371.44 2.33 -100.29 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -0.27 Total: 5.23 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 6.47 Total: 29.48 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.87 Total: -112.13 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -1.03 Total: -69.31 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -102.63 2.33 -100.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108320457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.503 kcal (2) G-P(sol) polarization free energy of solvation -102.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds