Wall clock time and date at job start Tue Mar 31 2020 19:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41387 * 126.80046 * 2 1 4 4 C 1.35445 * 103.98413 * 179.88898 * 3 2 1 5 5 C 1.50704 * 126.77327 * 180.09752 * 4 3 2 6 6 O 1.42904 * 109.47036 * 90.30698 * 5 4 3 7 7 C 1.42898 * 114.00010 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47447 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00210 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99967 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.55704 * 33.04582 * 11 10 8 13 13 C 1.54850 * 110.62681 * 155.94708 * 11 10 8 14 14 C 1.55840 * 103.44700 * 118.48804 * 13 11 10 15 15 H 1.08997 * 115.56274 * 159.56239 * 14 13 11 16 16 C 1.55839 * 105.06761 * 288.18022 * 14 13 11 17 17 C 1.54850 * 103.44833 * 71.82074 * 16 14 13 18 18 C 1.55837 * 110.62735 * 270.14894 * 11 10 8 19 19 H 1.09001 * 115.56246 * 81.94064 * 18 11 10 20 20 N 1.50242 * 101.04677 * 32.94197 * 14 13 11 21 21 C 1.36934 * 130.84104 * 126.03212 * 20 14 13 22 22 H 1.08004 * 120.00566 * 180.02562 * 21 20 14 23 23 C 1.38815 * 119.99760 * 0.02562 * 21 20 14 24 24 N 1.31609 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47022 * 89.99814 * 25 23 21 27 27 H 1.48497 * 109.47247 * 209.99912 * 25 23 21 28 28 H 1.48504 * 109.47079 * 330.00094 * 25 23 21 29 29 O 1.34035 * 106.44889 * 0.37139 * 4 3 2 30 30 N 1.20925 * 111.56728 * 359.74803 * 29 4 3 31 31 H 1.09008 * 109.47196 * 269.70383 * 1 2 3 32 32 H 1.09001 * 109.47016 * 149.70697 * 1 2 3 33 33 H 1.08998 * 109.47427 * 29.70622 * 1 2 3 34 34 H 1.08000 * 128.00502 * 0.03125 * 3 2 1 35 35 H 1.08999 * 109.46872 * 210.30463 * 5 4 3 36 36 H 1.08994 * 109.47390 * 330.30181 * 5 4 3 37 37 H 1.09006 * 109.47181 * 300.00122 * 7 6 5 38 38 H 1.09000 * 109.46965 * 59.99490 * 7 6 5 39 39 H 0.96998 * 120.00039 * 359.97438 * 10 8 7 40 40 H 1.09001 * 110.62799 * 236.98090 * 13 11 10 41 41 H 1.09004 * 110.62349 * 359.84182 * 13 11 10 42 42 H 1.09003 * 110.62854 * 190.31320 * 16 14 13 43 43 H 1.09008 * 110.62585 * 313.33365 * 16 14 13 44 44 H 1.09000 * 110.63019 * 118.49054 * 17 16 14 45 45 H 1.09007 * 110.62724 * 241.35382 * 17 16 14 46 46 H 0.97001 * 120.00114 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0025 5 6 4.9021 1.3698 0.0057 6 8 5.3135 1.6041 1.3540 7 6 6.5424 2.3241 1.4699 8 6 6.8780 2.5141 2.9267 9 8 6.1373 2.0764 3.7816 10 7 8.0005 3.1712 3.2796 11 6 8.3263 3.3564 4.6959 12 1 7.9802 2.5055 5.2827 13 6 9.8494 3.5644 4.8825 14 6 9.9468 4.9895 5.5057 15 1 10.8743 5.2091 6.0345 16 6 9.5874 5.9648 4.3447 17 6 8.0643 5.7568 4.1580 18 6 7.7072 4.6818 5.2329 19 1 6.6569 4.6281 5.5195 20 7 8.6853 5.0342 6.3204 21 6 8.4851 5.3096 7.6468 22 1 7.4863 5.2921 8.0573 23 6 9.5660 5.6112 8.4638 24 7 10.7831 5.6331 7.9635 25 14 9.2931 5.9861 10.2734 26 1 9.3700 4.7270 11.0568 27 1 10.3385 6.9284 10.7469 28 1 7.9535 6.6010 10.4549 29 8 3.4537 -0.7252 -0.0045 30 7 2.2868 -1.0422 -0.0058 31 1 -0.3634 -0.0053 1.0277 32 1 -0.3633 -0.8874 -0.5184 33 1 -0.3634 0.8926 -0.5092 34 1 2.0708 2.1744 0.0005 35 1 5.6656 0.7887 -0.5114 36 1 4.7647 2.3237 -0.5033 37 1 7.3399 1.7625 0.9832 38 1 6.4395 3.2979 0.9911 39 1 8.5926 3.5216 2.5959 40 1 10.2582 2.8185 5.5641 41 1 10.3626 3.5270 3.9216 42 1 9.8023 6.9952 4.6283 43 1 10.1259 5.6952 3.4361 44 1 7.5239 6.6839 4.3491 45 1 7.8473 5.3867 3.1560 46 1 11.5384 5.8442 8.5344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109440518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:27 Heat of formation + Delta-G solvation = 36.865534 kcal Electronic energy + Delta-G solvation = -28532.533070 eV Core-core repulsion = 24427.677946 eV Total energy + Delta-G solvation = -4104.855125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.20492 -40.09936 -38.80806 -37.58931 -35.08585 -33.95604 -32.97273 -32.35032 -29.68524 -29.12486 -29.00706 -28.70917 -27.36017 -26.11920 -24.12685 -23.38482 -21.47932 -20.80983 -20.49300 -19.55467 -18.61428 -18.05433 -17.85616 -17.18515 -16.93407 -16.55116 -16.53143 -15.46698 -15.05218 -14.93022 -14.78621 -14.34469 -14.03349 -13.77178 -13.70700 -13.57428 -13.37142 -12.88448 -12.68544 -12.33888 -12.22096 -12.08296 -11.78026 -11.51368 -11.46070 -11.07175 -10.94053 -10.91039 -10.84729 -10.30793 -10.25388 -10.15566 -10.10605 -9.90158 -9.86431 -9.60048 -9.38223 -9.25800 -8.94645 -8.54523 -6.92997 -5.73990 -3.11752 1.01385 1.88617 2.57603 2.77447 3.03603 3.39903 3.45114 3.46412 3.86962 3.87552 4.17892 4.44659 4.57989 4.60461 4.79260 4.80625 4.89616 4.96182 4.98323 5.12649 5.17226 5.17904 5.36748 5.41630 5.43003 5.53973 5.77659 5.77697 5.81993 5.93627 6.03645 6.08170 6.26903 6.30269 6.49433 6.54266 6.56945 6.65416 6.78620 6.93738 6.97045 7.24806 7.51268 7.70327 7.80532 7.96015 8.13922 8.44834 9.09483 9.71798 10.51588 11.35842 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002075 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.059883 B =13491.202403 C =14150.923712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.206 4.206 4 C -0.029 4.029 5 C 0.142 3.858 6 O -0.355 6.355 7 C 0.044 3.956 8 C 0.508 3.492 9 O -0.520 6.520 10 N -0.710 5.710 11 C 0.128 3.872 12 H 0.084 0.916 13 C -0.141 4.141 14 C 0.156 3.844 15 H 0.153 0.847 16 C -0.137 4.137 17 C -0.130 4.130 18 C 0.127 3.873 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.210 4.210 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 O 0.108 5.892 30 N -0.360 5.360 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.395 0.605 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 -5.432 -21.870 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.227 4.227 4 C -0.092 4.092 5 C 0.064 3.936 6 O -0.273 6.273 7 C -0.036 4.036 8 C 0.292 3.708 9 O -0.395 6.395 10 N -0.363 5.363 11 C 0.023 3.977 12 H 0.102 0.898 13 C -0.181 4.181 14 C 0.050 3.950 15 H 0.170 0.830 16 C -0.177 4.177 17 C -0.170 4.170 18 C 0.018 3.982 19 H 0.104 0.896 20 N -0.310 5.310 21 C -0.338 4.338 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 O 0.040 5.960 30 N -0.064 5.064 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.660 -7.052 -20.743 24.364 hybrid contribution 0.186 1.301 0.311 1.351 sum -10.474 -5.751 -20.431 23.669 Atomic orbital electron populations 1.20179 0.85731 1.03759 1.03643 1.23645 0.99221 0.88742 1.03067 1.22498 0.91021 1.01374 1.07835 1.23922 0.97407 0.83887 1.04001 1.20647 0.89875 0.97574 0.85478 1.88113 1.39076 1.76249 1.23883 1.22311 0.87606 0.97592 0.96052 1.20059 0.81960 0.78932 0.89894 1.90757 1.48704 1.48333 1.51711 1.46130 1.23829 1.56889 1.09466 1.22681 0.96636 0.99776 0.78630 0.89764 1.23307 0.92931 1.02270 0.99604 1.23698 0.94379 0.88779 0.88170 0.82997 1.23057 0.94890 1.01163 0.98577 1.22962 0.97139 0.99160 0.97716 1.23293 0.94183 0.91906 0.88800 0.89570 1.46507 1.01348 1.78945 1.04158 1.19068 0.93503 1.38950 0.82293 0.90294 1.24703 0.95154 1.02587 0.98351 1.69454 0.97830 1.55727 1.34182 0.86026 0.77039 0.77708 0.84464 1.21630 1.21698 1.20755 1.84828 1.21592 1.22565 1.67021 1.73861 0.89292 1.24152 1.19094 0.89965 0.90525 0.89911 0.80805 0.90392 0.89334 0.89943 0.89908 0.77030 0.91569 0.92667 0.92627 0.93623 0.93063 0.93195 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.47 36.00 0.38 -0.12 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -1.89 11.06 -39.38 -0.44 -2.32 16 4 C -0.03 -0.28 7.12 -35.30 -0.25 -0.54 16 5 C 0.14 1.07 6.50 36.01 0.23 1.30 16 6 O -0.36 -4.19 9.86 -55.14 -0.54 -4.74 16 7 C 0.04 0.42 6.42 36.00 0.23 0.65 16 8 C 0.51 7.39 7.91 -10.99 -0.09 7.30 16 9 O -0.52 -10.43 16.16 -14.36 -0.23 -10.66 16 10 N -0.71 -9.69 3.71 -51.40 -0.19 -9.88 16 11 C 0.13 2.33 3.13 -65.44 -0.20 2.13 16 12 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 13 C -0.14 -2.59 6.20 -24.24 -0.15 -2.74 16 14 C 0.16 3.42 4.69 -62.80 -0.29 3.13 16 15 H 0.15 3.82 5.57 -51.93 -0.29 3.53 16 16 C -0.14 -2.53 6.44 -24.24 -0.16 -2.68 16 17 C -0.13 -2.28 6.31 -24.06 -0.15 -2.44 16 18 C 0.13 2.61 5.39 -62.51 -0.34 2.28 16 19 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 20 N -0.59 -14.48 2.98 -145.47 -0.43 -14.91 16 21 C -0.21 -5.76 10.58 -15.06 -0.16 -5.92 16 22 H 0.08 2.14 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.92 -25.95 10.48 55.49 0.58 -25.37 16 25 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 O 0.11 1.31 11.20 17.19 0.19 1.51 16 30 N -0.36 -4.51 12.07 33.42 0.40 -4.11 16 31 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.40 4.06 7.92 -40.82 -0.32 3.74 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.69 7.82 -51.92 -0.41 0.28 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -34.91 378.82 -8.37 -43.28 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.75 Total: 3.12 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.08 Total: -0.91 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.36 Total: -54.27 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.58 Total: -13.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.91 -8.37 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109440518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.146 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds