Wall clock time and date at job start Tue Mar 31 2020 19:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41387 * 126.80046 * 2 1 4 4 C 1.35445 * 103.98413 * 179.88898 * 3 2 1 5 5 C 1.50704 * 126.77327 * 180.09752 * 4 3 2 6 6 O 1.42904 * 109.47036 * 90.30698 * 5 4 3 7 7 C 1.42898 * 114.00010 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47447 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00210 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99967 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.55704 * 33.04582 * 11 10 8 13 13 C 1.54850 * 110.62681 * 155.94708 * 11 10 8 14 14 C 1.55840 * 103.44700 * 118.48804 * 13 11 10 15 15 H 1.08997 * 115.56274 * 159.56239 * 14 13 11 16 16 C 1.55839 * 105.06761 * 288.18022 * 14 13 11 17 17 C 1.54850 * 103.44833 * 71.82074 * 16 14 13 18 18 C 1.55837 * 110.62735 * 270.14894 * 11 10 8 19 19 H 1.09001 * 115.56246 * 81.94064 * 18 11 10 20 20 N 1.50242 * 101.04677 * 32.94197 * 14 13 11 21 21 C 1.36934 * 130.84104 * 126.03212 * 20 14 13 22 22 H 1.08004 * 120.00566 * 180.02562 * 21 20 14 23 23 C 1.38815 * 119.99760 * 0.02562 * 21 20 14 24 24 N 1.31609 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47022 * 89.99814 * 25 23 21 27 27 H 1.48497 * 109.47247 * 209.99912 * 25 23 21 28 28 H 1.48504 * 109.47079 * 330.00094 * 25 23 21 29 29 O 1.34035 * 106.44889 * 0.37139 * 4 3 2 30 30 N 1.20925 * 111.56728 * 359.74803 * 29 4 3 31 31 H 1.09008 * 109.47196 * 269.70383 * 1 2 3 32 32 H 1.09001 * 109.47016 * 149.70697 * 1 2 3 33 33 H 1.08998 * 109.47427 * 29.70622 * 1 2 3 34 34 H 1.08000 * 128.00502 * 0.03125 * 3 2 1 35 35 H 1.08999 * 109.46872 * 210.30463 * 5 4 3 36 36 H 1.08994 * 109.47390 * 330.30181 * 5 4 3 37 37 H 1.09006 * 109.47181 * 300.00122 * 7 6 5 38 38 H 1.09000 * 109.46965 * 59.99490 * 7 6 5 39 39 H 0.96998 * 120.00039 * 359.97438 * 10 8 7 40 40 H 1.09001 * 110.62799 * 236.98090 * 13 11 10 41 41 H 1.09004 * 110.62349 * 359.84182 * 13 11 10 42 42 H 1.09003 * 110.62854 * 190.31320 * 16 14 13 43 43 H 1.09008 * 110.62585 * 313.33365 * 16 14 13 44 44 H 1.09000 * 110.63019 * 118.49054 * 17 16 14 45 45 H 1.09007 * 110.62724 * 241.35382 * 17 16 14 46 46 H 0.97001 * 120.00114 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0025 5 6 4.9021 1.3698 0.0057 6 8 5.3135 1.6041 1.3540 7 6 6.5424 2.3241 1.4699 8 6 6.8780 2.5141 2.9267 9 8 6.1373 2.0764 3.7816 10 7 8.0005 3.1712 3.2796 11 6 8.3263 3.3564 4.6959 12 1 7.9802 2.5055 5.2827 13 6 9.8494 3.5644 4.8825 14 6 9.9468 4.9895 5.5057 15 1 10.8743 5.2091 6.0345 16 6 9.5874 5.9648 4.3447 17 6 8.0643 5.7568 4.1580 18 6 7.7072 4.6818 5.2329 19 1 6.6569 4.6281 5.5195 20 7 8.6853 5.0342 6.3204 21 6 8.4851 5.3096 7.6468 22 1 7.4863 5.2921 8.0573 23 6 9.5660 5.6112 8.4638 24 7 10.7831 5.6331 7.9635 25 14 9.2931 5.9861 10.2734 26 1 9.3700 4.7270 11.0568 27 1 10.3385 6.9284 10.7469 28 1 7.9535 6.6010 10.4549 29 8 3.4537 -0.7252 -0.0045 30 7 2.2868 -1.0422 -0.0058 31 1 -0.3634 -0.0053 1.0277 32 1 -0.3633 -0.8874 -0.5184 33 1 -0.3634 0.8926 -0.5092 34 1 2.0708 2.1744 0.0005 35 1 5.6656 0.7887 -0.5114 36 1 4.7647 2.3237 -0.5033 37 1 7.3399 1.7625 0.9832 38 1 6.4395 3.2979 0.9911 39 1 8.5926 3.5216 2.5959 40 1 10.2582 2.8185 5.5641 41 1 10.3626 3.5270 3.9216 42 1 9.8023 6.9952 4.6283 43 1 10.1259 5.6952 3.4361 44 1 7.5239 6.6839 4.3491 45 1 7.8473 5.3867 3.1560 46 1 11.5384 5.8442 8.5344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109440518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:26 Heat of formation + Delta-G solvation = 13.442789 kcal Electronic energy + Delta-G solvation = -28533.548757 eV Core-core repulsion = 24427.677946 eV Total energy + Delta-G solvation = -4105.870811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.95236 -41.45147 -39.99801 -38.54440 -35.77743 -35.44154 -34.21271 -33.65507 -31.02679 -30.91140 -29.97677 -29.60800 -28.52445 -26.97193 -25.95312 -24.10782 -22.88205 -22.04436 -21.32344 -21.12589 -20.13287 -19.00437 -18.82415 -18.58584 -17.86856 -17.53529 -17.26259 -16.84489 -16.52048 -16.22117 -15.89674 -15.82061 -15.29791 -14.95484 -14.42977 -14.22256 -14.07412 -13.98561 -13.92023 -13.54229 -13.47133 -13.22419 -13.17848 -12.87365 -12.78040 -12.74312 -12.57847 -12.34902 -12.13803 -11.99605 -11.89160 -11.54915 -11.16502 -11.03211 -10.99742 -10.80515 -10.75797 -10.73945 -10.52312 -9.96672 -8.84829 -7.79998 -5.18571 0.29523 1.18290 1.45253 1.46775 1.54612 1.68941 1.85716 2.17191 2.49193 3.12179 3.25261 3.33570 3.48637 3.58070 3.81362 3.99136 4.01881 4.12740 4.14841 4.18142 4.30688 4.33786 4.42548 4.45889 4.47540 4.50511 4.60697 4.63864 4.66529 4.74372 4.84570 4.88438 4.89599 4.99901 5.10141 5.18211 5.22152 5.25741 5.35399 5.49569 5.56569 5.78488 5.91211 5.98245 6.28007 6.70775 7.06385 7.22560 7.39178 7.69220 8.55200 9.26808 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002075 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.059883 B =13491.202403 C =14150.923712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.003 3.997 3 C -0.210 4.210 4 C -0.040 4.040 5 C 0.141 3.859 6 O -0.399 6.399 7 C 0.053 3.947 8 C 0.502 3.498 9 O -0.586 6.586 10 N -0.693 5.693 11 C 0.147 3.853 12 H 0.046 0.954 13 C -0.126 4.126 14 C 0.139 3.861 15 H 0.118 0.882 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.115 3.885 19 H 0.063 0.937 20 N -0.620 5.620 21 C -0.224 4.224 22 H 0.068 0.932 23 C -0.064 4.064 24 N -0.942 5.942 25 Si 0.974 3.026 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.277 1.277 29 O 0.083 5.917 30 N -0.398 5.398 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.201 0.799 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.419 0.581 40 H 0.041 0.959 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.095 0.905 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 -4.465 -25.431 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C -0.231 4.231 4 C -0.104 4.104 5 C 0.065 3.935 6 O -0.319 6.319 7 C -0.026 4.026 8 C 0.289 3.711 9 O -0.465 6.465 10 N -0.347 5.347 11 C 0.039 3.961 12 H 0.064 0.936 13 C -0.165 4.165 14 C 0.033 3.967 15 H 0.135 0.865 16 C -0.164 4.164 17 C -0.153 4.153 18 C 0.007 3.993 19 H 0.081 0.919 20 N -0.342 5.342 21 C -0.354 4.354 22 H 0.086 0.914 23 C -0.257 4.257 24 N -0.592 5.592 25 Si 0.804 3.196 26 H -0.218 1.218 27 H -0.216 1.216 28 H -0.202 1.202 29 O 0.018 5.982 30 N -0.106 5.106 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.218 0.782 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.258 0.742 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.604 -6.072 -24.387 27.277 hybrid contribution 0.106 0.972 1.401 1.708 sum -10.498 -5.100 -22.987 25.780 Atomic orbital electron populations 1.20336 0.83633 1.05136 1.04230 1.24325 1.00779 0.88749 1.01685 1.22933 0.90604 1.02355 1.07187 1.24623 0.99136 0.83264 1.03370 1.21015 0.89178 0.99366 0.83979 1.88041 1.40223 1.77033 1.26584 1.22408 0.88110 1.00414 0.91651 1.21160 0.80741 0.77130 0.92076 1.90743 1.50755 1.50808 1.54180 1.45803 1.24360 1.56801 1.07774 1.22041 0.96031 0.96909 0.81075 0.93565 1.23132 0.93151 0.99166 1.01080 1.23637 0.92234 0.91850 0.89006 0.86484 1.22949 0.95712 0.98899 0.98844 1.22865 0.96289 0.97549 0.98617 1.23439 0.92632 0.94335 0.88892 0.91859 1.46789 1.03696 1.79631 1.04086 1.19277 0.93193 1.38520 0.84373 0.91368 1.25402 0.95166 1.03383 1.01766 1.69682 0.98040 1.56634 1.34841 0.85132 0.76956 0.77200 0.80360 1.21800 1.21613 1.20203 1.84770 1.21598 1.23996 1.67821 1.73850 0.89866 1.25710 1.21197 0.89622 0.90358 0.87369 0.78150 0.88048 0.85509 0.85988 0.85499 0.74182 0.93977 0.87922 0.94742 0.88858 0.94071 0.88717 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.47 71.23 0.75 -0.16 16 2 C 0.00 0.06 7.33 43.58 0.32 0.37 16 3 C -0.21 -3.46 11.06 22.40 0.25 -3.22 16 4 C -0.04 -0.74 7.12 25.04 0.18 -0.56 16 5 C 0.14 1.58 6.50 71.24 0.46 2.05 16 6 O -0.40 -8.18 9.86 -129.94 -1.28 -9.46 16 7 C 0.05 0.73 6.42 71.24 0.46 1.18 16 8 C 0.50 13.27 7.91 87.66 0.69 13.97 16 9 O -0.59 -23.54 16.16 15.99 0.26 -23.28 16 10 N -0.69 -16.47 3.71 -434.92 -1.61 -18.08 16 11 C 0.15 5.22 3.13 46.60 0.15 5.37 16 12 H 0.05 2.01 7.58 -2.38 -0.02 1.99 16 13 C -0.13 -4.42 6.20 32.21 0.20 -4.22 16 14 C 0.14 6.03 4.69 46.22 0.22 6.25 16 15 H 0.12 6.02 5.57 -2.39 -0.01 6.01 16 16 C -0.12 -4.26 6.44 32.21 0.21 -4.05 16 17 C -0.11 -3.69 6.31 32.32 0.20 -3.49 16 18 C 0.11 4.73 5.39 46.30 0.25 4.98 16 19 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 20 N -0.62 -31.28 2.98 -614.17 -1.83 -33.11 16 21 C -0.22 -12.81 10.58 84.03 0.89 -11.92 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 24 N -0.94 -54.66 10.48 21.65 0.23 -54.43 16 25 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 O 0.08 2.01 11.20 71.68 0.80 2.81 16 30 N -0.40 -10.11 12.07 -49.56 -0.60 -10.71 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.13 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.42 6.04 7.92 -92.71 -0.73 5.30 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 2.60 7.39 -2.38 -0.02 2.58 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 2.30 7.82 -2.38 -0.02 2.29 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 2.21 6.40 -2.38 -0.02 2.19 16 46 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -84.96 378.82 3.95 -81.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.27 Total: 13.32 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.68 Total: 3.36 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.82 Total: -116.33 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.22 Total: -29.94 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -84.96 3.95 -81.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109440518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.451 kcal (2) G-P(sol) polarization free energy of solvation -84.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds