Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 126.77365 * 2 1 4 4 C 1.41385 * 103.98568 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80041 * 179.74079 * 4 3 2 6 6 O 1.42894 * 109.47675 * 359.97438 * 5 4 3 7 7 C 1.42902 * 114.00462 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47197 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99618 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00008 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.56337 * 32.09250 * 11 10 8 13 13 C 1.54854 * 110.62455 * 269.01825 * 11 10 8 14 14 C 1.55842 * 103.44693 * 241.51041 * 13 11 10 15 15 H 1.09003 * 116.12641 * 159.14877 * 14 13 11 16 16 C 1.55842 * 105.06744 * 288.17633 * 14 13 11 17 17 C 1.54854 * 103.44483 * 71.82214 * 16 14 13 18 18 C 1.55843 * 103.44751 * 0.02562 * 17 16 14 19 19 H 1.08996 * 116.13271 * 159.14669 * 18 17 16 20 20 N 1.50239 * 101.05011 * 32.93918 * 14 13 11 21 21 C 1.36944 * 130.83823 * 126.01055 * 20 14 13 22 22 H 1.08003 * 119.99789 * 180.02562 * 21 20 14 23 23 C 1.38806 * 119.99740 * 0.02562 * 21 20 14 24 24 N 1.31622 * 120.00424 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47281 * 120.00123 * 25 23 21 28 28 H 1.48496 * 109.47163 * 240.00371 * 25 23 21 29 29 N 1.30179 * 106.39389 * 0.02562 * 4 3 2 30 30 O 1.20927 * 111.60367 * 359.97438 * 29 4 3 31 31 H 1.08992 * 109.47287 * 89.99876 * 1 2 3 32 32 H 1.09000 * 109.46745 * 209.99822 * 1 2 3 33 33 H 1.08996 * 109.46815 * 329.99376 * 1 2 3 34 34 H 1.08003 * 128.01213 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47220 * 120.00648 * 5 4 3 36 36 H 1.09003 * 109.47042 * 240.00053 * 5 4 3 37 37 H 1.08994 * 109.47277 * 300.00786 * 7 6 5 38 38 H 1.09000 * 109.46116 * 60.00683 * 7 6 5 39 39 H 0.97003 * 119.99318 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.62600 * 0.02562 * 13 11 10 41 41 H 1.08997 * 110.62463 * 123.02468 * 13 11 10 42 42 H 1.09000 * 110.63086 * 190.31014 * 16 14 13 43 43 H 1.09004 * 110.62720 * 313.17621 * 16 14 13 44 44 H 1.09005 * 110.63023 * 241.51199 * 17 16 14 45 45 H 1.09007 * 110.62808 * 118.49120 * 17 16 14 46 46 H 0.97000 * 119.99698 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3002 -0.0046 6 8 4.6500 2.7031 -0.0110 7 6 5.8214 3.5216 -0.0158 8 6 5.4195 4.9740 -0.0217 9 8 4.2455 5.2782 -0.0224 10 7 6.3647 5.9347 -0.0274 11 6 5.9740 7.3466 -0.0326 12 1 5.0395 7.4872 0.5106 13 6 5.8499 7.8728 -1.4837 14 6 6.9204 9.0033 -1.5519 15 1 7.2627 9.2807 -2.5490 16 6 6.3371 10.1660 -0.6937 17 6 6.4611 9.6397 0.7574 18 6 7.1032 8.2310 0.5783 19 1 7.6035 7.8168 1.4536 20 7 7.9715 8.4609 -0.6256 21 6 9.3096 8.2430 -0.8191 22 1 9.9121 7.8390 -0.0189 23 6 9.8914 8.5413 -2.0435 24 7 9.1571 9.0341 -3.0184 25 14 11.7164 8.2433 -2.3077 26 1 12.3121 7.6873 -1.0660 27 1 11.9045 7.2790 -3.4211 28 1 12.3836 9.5261 -2.6459 29 7 3.4764 -0.7564 0.0003 30 8 2.3095 -1.0736 0.0002 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 2.0345 2.1271 0.0004 35 1 5.4958 1.0448 0.8857 36 1 5.4932 1.0370 -0.8942 37 1 6.4142 3.3126 0.8746 38 1 6.4127 3.3042 -0.9053 39 1 7.3036 5.6912 -0.0272 40 1 6.0787 7.0832 -2.1994 41 1 4.8533 8.2766 -1.6618 42 1 6.9267 11.0734 -0.8248 43 1 5.2934 10.3471 -0.9511 44 1 5.4782 9.5580 1.2216 45 1 7.1123 10.2861 1.3460 46 1 9.5637 9.2422 -3.8742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110705981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = 29.410968 kcal Electronic energy + Delta-G solvation = -28611.452225 eV Core-core repulsion = 24506.273846 eV Total energy + Delta-G solvation = -4105.178379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.13266 -39.89496 -38.77106 -37.57714 -34.44086 -33.81275 -33.57158 -32.57771 -29.65262 -29.15778 -28.65521 -28.03815 -27.68741 -26.21240 -24.22976 -23.12187 -21.59004 -20.61811 -19.92893 -19.77630 -18.70790 -17.92895 -17.64426 -17.07210 -16.83035 -16.65304 -16.39808 -15.49558 -15.00776 -14.85184 -14.46898 -14.25598 -13.94530 -13.87450 -13.66114 -13.57272 -13.27247 -12.82303 -12.69245 -12.62440 -12.07382 -12.01413 -11.86429 -11.38061 -11.27789 -11.15562 -10.97811 -10.96020 -10.55163 -10.53757 -10.39463 -10.12471 -9.95152 -9.83909 -9.68799 -9.50366 -9.27389 -9.18875 -9.01540 -8.50947 -6.99901 -5.79652 -3.19082 1.23513 2.01404 2.68323 2.87763 2.91183 3.32011 3.37203 3.40326 3.72693 4.19168 4.35780 4.47783 4.78608 4.81358 4.97142 4.98390 5.06228 5.06878 5.08948 5.11773 5.16914 5.19050 5.31289 5.45950 5.57482 5.60602 5.66456 5.84243 5.90884 6.02089 6.06955 6.11347 6.26934 6.38777 6.45655 6.57593 6.70207 6.72836 6.79600 6.92675 7.08484 7.29259 7.42725 7.74710 7.92615 8.02163 8.12555 8.55439 9.02103 9.65408 10.46367 11.29285 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002305 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.147211 B =12146.130756 C =13210.771633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.203 4.203 4 C 0.020 3.980 5 C 0.142 3.858 6 O -0.356 6.356 7 C 0.045 3.955 8 C 0.511 3.489 9 O -0.533 6.533 10 N -0.704 5.704 11 C 0.130 3.870 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.154 3.846 15 H 0.153 0.847 16 C -0.139 4.139 17 C -0.127 4.127 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.592 5.592 21 C -0.215 4.215 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 N -0.363 5.363 30 O 0.099 5.901 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.178 0.822 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.403 0.597 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -13.412 6.642 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.225 4.225 4 C -0.138 4.138 5 C 0.065 3.935 6 O -0.273 6.273 7 C -0.035 4.035 8 C 0.296 3.704 9 O -0.409 6.409 10 N -0.355 5.355 11 C 0.024 3.976 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.179 4.179 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.106 0.894 20 N -0.312 5.312 21 C -0.343 4.343 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.746 3.254 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 N -0.069 5.069 30 O 0.032 5.968 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.196 0.804 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.238 0.762 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.247 -14.126 6.466 19.782 hybrid contribution 1.405 0.436 -0.169 1.481 sum -10.842 -13.690 6.297 18.564 Atomic orbital electron populations 1.20330 0.83841 1.04643 1.04158 1.24550 0.96463 0.85966 1.03485 1.22477 0.90661 1.01529 1.07803 1.23133 0.97213 0.90082 1.03417 1.20315 0.90344 0.80803 1.02085 1.87940 1.29408 1.14384 1.95587 1.22282 0.88295 0.89973 1.02947 1.20016 0.86462 0.86655 0.77288 1.90686 1.17840 1.83247 1.49148 1.45896 1.09451 1.06389 1.73747 1.22672 0.98295 0.78591 0.98018 0.90139 1.23449 0.99139 1.00587 0.95152 1.23762 0.84872 0.88841 0.97827 0.83008 1.23070 0.98776 1.00320 0.95718 1.22873 0.98798 0.97549 0.97522 1.23178 0.90214 0.93400 0.91531 0.89396 1.46555 1.04001 1.72774 1.07905 1.19042 0.82059 1.35830 0.97333 0.90336 1.24713 0.98091 1.01736 0.96085 1.69473 1.33800 1.49512 1.03838 0.85998 0.84451 0.77407 0.77572 1.20612 1.21844 1.21801 1.73775 0.97364 1.15327 1.20400 1.84795 1.11042 1.33198 1.67785 0.89394 0.89922 0.88873 0.80414 0.90706 0.90640 0.90092 0.89869 0.76200 0.92197 0.92761 0.92631 0.93286 0.92953 0.92418 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.01 0.38 0.01 16 2 C -0.04 -0.39 7.49 -35.30 -0.26 -0.66 16 3 C -0.20 -2.33 10.45 -39.38 -0.41 -2.74 16 4 C 0.02 0.24 7.28 -82.10 -0.60 -0.35 16 5 C 0.14 1.56 6.56 36.00 0.24 1.80 16 6 O -0.36 -4.80 9.37 -55.14 -0.52 -5.31 16 7 C 0.04 0.54 6.42 36.01 0.23 0.77 16 8 C 0.51 8.28 7.91 -10.99 -0.09 8.19 16 9 O -0.53 -10.63 16.15 -14.35 -0.23 -10.86 16 10 N -0.70 -11.43 5.07 -51.37 -0.26 -11.69 16 11 C 0.13 2.35 2.80 -65.41 -0.18 2.17 16 12 H 0.08 1.47 7.23 -51.93 -0.38 1.10 16 13 C -0.14 -2.85 6.23 -24.24 -0.15 -3.01 16 14 C 0.15 3.41 4.72 -62.80 -0.30 3.11 16 15 H 0.15 3.89 5.52 -51.93 -0.29 3.61 16 16 C -0.14 -2.70 6.44 -24.24 -0.16 -2.85 16 17 C -0.13 -2.25 6.44 -24.24 -0.16 -2.41 16 18 C 0.13 2.35 5.06 -62.79 -0.32 2.03 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 20 N -0.59 -13.54 2.98 -145.81 -0.44 -13.97 16 21 C -0.21 -5.43 10.59 -15.06 -0.16 -5.59 16 22 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -25.22 10.47 55.49 0.58 -24.64 16 25 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 N -0.36 -4.65 12.07 33.43 0.40 -4.25 16 30 O 0.10 1.13 11.20 17.18 0.19 1.32 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.18 2.03 8.05 -52.48 -0.42 1.61 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.40 6.15 8.66 -40.82 -0.35 5.80 16 40 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 41 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 44 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 45 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -31.86 380.96 -8.43 -40.28 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.84 Total: 7.39 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.03 Total: 0.11 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.29 Total: -54.55 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.56 Total: -14.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.86 -8.43 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110705981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.694 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds